Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Forward (+)

78896140 .. 78899735

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATTGCCACAAAACTCATCAAGTTTCATGAGGAATTTGTGAGACAAGAGGCTTTATATATGCTTCAAAATGCTTTGGAAGGGTCTGGTGGTAGTGCTGCTACTTCAGCATACACCGAGGCATTTCGTCTCATCATGCAGTTTGCTGTTGATGCTGACGTCCTTGAGGATCCTGTTTCATCTGTCCGTGATGCAGAAGCATTGGGTTCGCTGCTTGCTCTTGGAATGAATCCTGATGCACAGGTTCAACCAAGAGGGAAGGGACCTTTTCCTCCAGCAAAGAAACTAGAAGGTGGTTTGCCAAGGCATTTAGCGTTGCCTTTCACAAAAGCAAGTGGCACTAGGTCAAAGGATGTGCGAGTTGGCATAACATTGTCTTGGGTGTTCTTCTTACAGGCAATTCGTTTGAAGTACTTGCATCCAGACAGTGAGCTTCAAAACTATGCAATTCAGGTTATGGACATGCTTCGTGCCGATACTTCTGCTTGTGTTCTCTATATCCTTCGTGTTGGTGTTACCAATCAGATGACAGAACCTACTCAAAGGAGTTTTTTGGTTTTTCTTGGACAGCAGCTTATGTCTCCTGATGCCAGTCCTTCCATGAAAATTGCTGGTCTACGTACTGTCTCATATACCCTAAAAACTCTGGGAGAGGTTCCAGCTGAGTTCAAGGAAGTACTTGACAACACTGTTGTTGCAGCAGTATCTCATTCTTCTCAACTTGTAAGCTCTAGATTTCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.19

Weight (kDa)

7.85

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	616
AclWI	GGATC	2 cut(s)	164, 177
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	413, 622, 678
AgsI	TTSAA	5 cut(s)	68, 248, 409, 437, 670
AluBI	AGCT	4 cut(s)	433, 574, 662, 729
AluI	AGCT	4 cut(s)	433, 574, 662, 729
Alw26I	GTCTC	4 cut(s)	37, 134, 585, 631
AlwI	GGATC	2 cut(s)	164, 177
ApeKI	GCWGC	4 cut(s)	98, 211, 571, 698
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	85, 198, 583, 710
BcgI	CGANNNNNNTGC	4 cut(s)	189, 223, 464, 498
BcoDI	GTCTC	4 cut(s)	37, 134, 585, 631
BfaI	CTAG	3 cut(s)	287, 342, 732
BisI	GCNGC	4 cut(s)	99, 212, 572, 699
BlsI	GCNGC	4 cut(s)	100, 213, 573, 700
BmcAI	AGTACT	2 cut(s)	413, 678
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	171, 264, 657
BmsI	GCATC	5 cut(s)	142, 181, 226, 427, 577
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	620
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	117, 302
Bse1I	ACTGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	117, 302
BseGI	GGATG	2 cut(s)	358, 418
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	4 cut(s)	85, 198, 583, 710
BslFI	GGGAC	1 cut(s)	276
BsmAI	GTCTC	4 cut(s)	37, 134, 585, 631
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	171, 264, 657
BspPI	GGATC	2 cut(s)	164, 177
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	2 cut(s)	117, 302
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	428, 625, 691
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	663
BstF5I	GGATG	2 cut(s)	358, 418
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	4 cut(s)	37, 134, 585, 631
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 152
BstNSI	RCATGY	1 cut(s)	466
BstSNI	TACGTA	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	85, 198, 583, 710
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	358, 418
BtsIMutI	CAGTG	2 cut(s)	433, 687
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	412, 621, 677
CviAII	CATG	4 cut(s)	29, 136, 463, 601
CviJI	RGCY	5 cut(s)	53, 433, 574, 662, 729
CviKI_1	RGCY	5 cut(s)	53, 433, 574, 662, 729
CviQI	GTAC	3 cut(s)	412, 621, 677
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco105I	TACGTA	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	4 cut(s)	32, 139, 466, 604
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	28, 135, 462, 600
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	99, 212, 572, 699
FokI	GGATG	2 cut(s)	365, 405
Fsp4HI	GCNGC	4 cut(s)	99, 212, 572, 699
FspBI	CTAG	3 cut(s)	287, 342, 732
GluI	GCNGC	4 cut(s)	99, 212, 572, 699
GsuI	CTGGAG	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	32, 139, 466, 604
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	5 cut(s)	29, 233, 422, 584, 732
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	5 cut(s)	74, 253, 284, 512, 606
HpyCH4III	ACNGT	3 cut(s)	428, 625, 691
HpyCH4IV	ACGT	2 cut(s)	159, 619
HpyCH4V	TGCA	6 cut(s)	139, 194, 239, 418, 446, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 152
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	2 cut(s)	159, 619
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	32, 139, 466, 604
Kzo9I	GATC	1 cut(s)	169
Lsp1109I	GCAGC	4 cut(s)	85, 198, 583, 710
LweI	GCATC	5 cut(s)	142, 181, 226, 427, 577
MaeI	CTAG	3 cut(s)	287, 342, 732
MaeII	ACGT	2 cut(s)	159, 619
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	379, 705
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	4 cut(s)	35, 399, 447, 606
MnlI	CCTC	7 cut(s)	25, 43, 112, 160, 248, 282, 646
MspA1I	CMGCKG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	107, 152
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	4 cut(s)	32, 139, 466, 604
NlaIV	GGNNCC	3 cut(s)	171, 264, 657
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	100, 213, 573, 700
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	171, 264, 657
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	3 cut(s)	413, 622, 678
RsaNI	GTAC	3 cut(s)	412, 621, 677
SatI	GCNGC	4 cut(s)	99, 212, 572, 699
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	2 cut(s)	413, 678
SfaNI	GCATC	5 cut(s)	142, 181, 226, 427, 577
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SnaBI	TACGTA	1 cut(s)	620
Sse9I	AATT	4 cut(s)	35, 399, 447, 606
SspMI	CTAG	3 cut(s)	287, 342, 732
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	428, 625, 691
TaiI	ACGT	2 cut(s)	162, 622
TasI	AATT	4 cut(s)	35, 399, 447, 606
TatI	WGTACW	2 cut(s)	411, 676
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	2 cut(s)	433, 694
TseI	GCWGC	4 cut(s)	98, 211, 571, 698
TspDTI	ATGAA	4 cut(s)	17, 168, 242, 617
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	433, 694
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	616
XspI	CTAG	3 cut(s)	287, 342, 732
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	2 cut(s)	413, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.