Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Reverse (-)

3147 .. 3509

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcaaccatttccttcgatccaaggcctaatctccaagccactaacaatcatagtcatcaacatggagttgttgttgaagaaattgaaggccttatcagagtccacaaaaatggatacatagaaaggccttcaattatccctagtgtcccttgcactactgcagcagctagagatgttgtcattgacaaattctccaacttgtgggcgagtatttatgttcccagcccggggctaataacctcccggtgcttgtttactttcatggtggaggattctgtgttggctctgctgcttggagctgctaccatgagttcctcagcaaccttgcttgtaaagcaagttgtgtcatcgtctctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

120

Amino Acids

12.95

Weight (kDa)

6.39

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	204
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
AgsI	TTSAA	3 cut(s)	80, 89, 135
AluBI	AGCT	2 cut(s)	170, 302
AluI	AGCT	2 cut(s)	170, 302
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	3 cut(s)	26, 91, 128
ApeKI	GCWGC	4 cut(s)	164, 167, 292, 302
ApoI	RAATTY	1 cut(s)	191
AsuC2I	CCSGG	3 cut(s)	230, 231, 247
AvaI	CYCGRG	1 cut(s)	229
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	176, 179, 279, 289
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	3 cut(s)	230, 231, 247
BfaI	CTAG	2 cut(s)	144, 171
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	4 cut(s)	165, 168, 293, 303
BlsI	GCNGC	4 cut(s)	166, 169, 294, 304
Bme1390I	CCNGG	3 cut(s)	230, 231, 247
BmeT110I	CYCGRG	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	230, 231, 247
Bpu10I	CCTNAGC	1 cut(s)	319
BpuMI	CCSGG	3 cut(s)	230, 231, 247
BsaJI	CCNNGG	3 cut(s)	23, 229, 230
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 230, 231
BseDI	CCNNGG	3 cut(s)	23, 229, 230
BseLI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	4 cut(s)	176, 179, 279, 289
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	3 cut(s)	28, 93, 130
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	230, 247
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	28, 93, 130
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	28, 93, 130
BspCNI	CTCAG	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	23, 229, 230
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstSCI	CCNGG	3 cut(s)	228, 229, 245
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	176, 179, 279, 289
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	28, 93, 130
Cfr9I	CCCGGG	1 cut(s)	229
CviAII	CATG	3 cut(s)	65, 265, 310
CviJI	RGCY	9 cut(s)	28, 41, 93, 130, 170, 228, 235, 287, 302
CviKI_1	RGCY	9 cut(s)	28, 41, 93, 130, 170, 228, 235, 287, 302
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	3 cut(s)	28, 93, 130
Eco88I	CYCGRG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	68, 268, 313
FaiI	YATR	6 cut(s)	54, 66, 122, 219, 266, 311
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	64, 264, 309
Fnu4HI	GCNGC	4 cut(s)	165, 168, 293, 303
Fsp4HI	GCNGC	4 cut(s)	165, 168, 293, 303
FspBI	CTAG	2 cut(s)	144, 171
GluI	GCNGC	4 cut(s)	165, 168, 293, 303
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	28, 93, 130
HapII	CCGG	2 cut(s)	230, 247
Hin1II	CATG	3 cut(s)	68, 268, 313
HinfI	GANTC	2 cut(s)	102, 275
HpaII	CCGG	2 cut(s)	230, 247
Hpy166II	GTNNAC	2 cut(s)	106, 258
Hpy188I	TCNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	106, 258
HpyAV	CCTTC	3 cut(s)	25, 83, 141
HpyCH4V	TGCA	2 cut(s)	156, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	68, 268, 313
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	3 cut(s)	238, 243, 260
Lsp1109I	GCAGC	4 cut(s)	176, 179, 279, 289
MaeI	CTAG	2 cut(s)	144, 171
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	3 cut(s)	84, 135, 191
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	253, 265, 328
MslI	CAYNNNNRTG	2 cut(s)	63, 111
MspI	CCGG	2 cut(s)	230, 247
MspR9I	CCNGG	3 cut(s)	230, 231, 247
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	3 cut(s)	230, 231, 247
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	68, 268, 313
PceI	AGGCCT	3 cut(s)	28, 93, 130
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	166, 169, 294, 304
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	63, 111
SatI	GCNGC	4 cut(s)	165, 168, 293, 303
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	3 cut(s)	230, 231, 247
SetI	ASST	4 cut(s)	172, 245, 304, 329
SfcI	CTRYAG	1 cut(s)	162
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	63, 111
Sse9I	AATT	3 cut(s)	84, 135, 191
SseBI	AGGCCT	3 cut(s)	28, 93, 130
SspMI	CTAG	2 cut(s)	144, 171
StuI	AGGCCT	3 cut(s)	28, 93, 130
StyD4I	CCNGG	3 cut(s)	228, 229, 245
StyI	CCWWGG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	84, 135, 191
TfiI	GAWTC	1 cut(s)	275
TseI	GCWGC	4 cut(s)	164, 167, 292, 302
TspDTI	ATGAA	1 cut(s)	253
TspMI	CCCGGG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	229
XspI	CTAG	2 cut(s)	144, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.