Rh2CG551000

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017783
Physical Location & Seq
Forward (+)
73105722 .. 73115131
9410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG551000.1

Sequence Viewer

Length: 837 bp
ATGATTGCCACAAAACTCATCAAGTTTCATGAGGAATTTGTGAGACAAGAGGCTTTATATATGCTTCAAAATGCTTTGGAAGGGTCTGGTGGTAGTGCTGCTACTTCAGCATACACCGAGGCATTTCGTCTCATCATGCGGTTTGCTGCCCTTGAGGATCCTGTTTCATCTGTCCGTGATGCAGAAGCATTGGGTTCGCTGCTTGCTCTTGGAATGAATCCTGATGCACAGGTTCAACCAAGAGGGAAGGGACCTTTTCCTCCAGCAAAGAAACTAGAAGGTGGTTTGCCAAGGCATTTAGCGTTGCCTTTCACAAAAGCAAGTGGCACTAGGTCAAAGGATGTGCGAGTTGGCATAACATATTGTCTTGGGTGTTCTTGTTACAGCCAACCAATACCAGAACCAGAAGTTGTGTTGGCTCAGGCAATTCGTTTGAAGTACTTGCATCCAGACAGTGAGCTTCAAAACTATGCAATTCAGGCTTGTGTTCTCTATATCCTTCGTGTTGGTGTTACCAATCAGATGACAGAACCTACTCAAAGGAGTTTTTTGGTTTTTCTTGGACAGCAGCTTATGTCTCCTGATGCCAGTCCTTCCATGAAAATTGCTGGTCTACGTACTGTCTCATATACCCTAAAAACTCTGGGAGAGGTTCCAGCTGAGTTCAAGGAAGTACTTGACAACACTGTTGTTGCAGCAGTATCTCATTCTTCTCAACTTAAAAAAGAGAGGACACAACGCTGCAACGTGAAGAGGAAGCAGGAGGATAGCAACGTGGAAAAGAAGAACGACAAAGTAGCGAAGGCAAGAAAACAGTTTGGAAGACGAAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.63

Weight (kDa)

9.46

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 613
AciI CCGC 1 cut(s) 139
AclWI GGATC 2 cut(s) 152, 165
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 3 cut(s) 440, 619, 675
AgsI TTSAA 5 cut(s) 68, 236, 436, 464, 667
AluBI AGCT 4 cut(s) 460, 571, 659, 831
AluI AGCT 4 cut(s) 460, 571, 659, 831
Alw26I GTCTC 4 cut(s) 37, 134, 582, 628
AlwI GGATC 2 cut(s) 152, 165
ApeKI GCWGC 6 cut(s) 98, 146, 199, 568, 695, 741
ApoI RAATTY 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 829
BbvI GCAGC 6 cut(s) 85, 133, 186, 580, 707, 728
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BcoDI GTCTC 4 cut(s) 37, 134, 582, 628
BfaI CTAG 2 cut(s) 275, 330
BisI GCNGC 6 cut(s) 99, 147, 200, 569, 696, 742
BlsI GCNGC 6 cut(s) 100, 148, 201, 570, 697, 743
BmcAI AGTACT 2 cut(s) 440, 675
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 3 cut(s) 159, 252, 654
BmsI GCATC 4 cut(s) 169, 214, 454, 574
BpiI GAAGAC 1 cut(s) 829
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 117, 290
Bse1I ACTGG 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 117, 290
BseGI GGATG 2 cut(s) 346, 445
BseMII CTCAG 2 cut(s) 434, 651
BseNI ACTGG 1 cut(s) 588
BseXI GCAGC 6 cut(s) 85, 133, 186, 580, 707, 728
BslFI GGGAC 1 cut(s) 264
BsmAI GTCTC 4 cut(s) 37, 134, 582, 628
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 433, 652
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 159, 252, 654
BspPI GGATC 2 cut(s) 152, 165
BsrI ACTGG 1 cut(s) 588
BssECI CCNNGG 2 cut(s) 117, 290
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 4 cut(s) 455, 622, 688, 816
Bst6I CTCTTC 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 420, 660
BstF5I GGATG 2 cut(s) 346, 445
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 4 cut(s) 37, 134, 582, 628
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 107, 479
BstSNI TACGTA 1 cut(s) 617
BstV1I GCAGC 6 cut(s) 85, 133, 186, 580, 707, 728
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtsCI GGATG 2 cut(s) 346, 445
BtsIMutI CAGTG 2 cut(s) 460, 684
Cac8I GCNNGC 1 cut(s) 204
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 439, 618, 674
CviAII CATG 3 cut(s) 29, 136, 598
CviJI RGCY 8 cut(s) 53, 387, 419, 460, 482, 571, 659, 831
CviKI_1 RGCY 8 cut(s) 53, 387, 419, 460, 482, 571, 659, 831
CviQI GTAC 3 cut(s) 439, 618, 674
DdeI CTNAG 2 cut(s) 420, 660
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
Eco105I TACGTA 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 3 cut(s) 32, 139, 601
FaqI GGGAC 1 cut(s) 264
FatI CATG 3 cut(s) 28, 135, 597
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 99, 147, 200, 569, 696, 742
FokI GGATG 2 cut(s) 353, 432
Fsp4HI GCNGC 6 cut(s) 99, 147, 200, 569, 696, 742
FspBI CTAG 2 cut(s) 275, 330
GluI GCNGC 6 cut(s) 99, 147, 200, 569, 696, 742
GsuI CTGGAG 1 cut(s) 246
Hin1II CATG 3 cut(s) 32, 139, 601
HinfI GANTC 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 4 cut(s) 29, 221, 449, 581
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 6 cut(s) 74, 241, 272, 509, 603, 796
HpyCH4III ACNGT 4 cut(s) 455, 622, 688, 816
HpyCH4IV ACGT 3 cut(s) 616, 747, 774
HpyCH4V TGCA 6 cut(s) 182, 227, 445, 473, 695, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 479
HpyF3I CTNAG 2 cut(s) 420, 660
HpySE526I ACGT 3 cut(s) 616, 747, 774
Hsp92II CATG 3 cut(s) 32, 139, 601
Kzo9I GATC 1 cut(s) 157
Lsp1109I GCAGC 6 cut(s) 85, 133, 186, 580, 707, 728
LweI GCATC 4 cut(s) 169, 214, 454, 574
MaeI CTAG 2 cut(s) 275, 330
MaeII ACGT 3 cut(s) 616, 747, 774
MaeIII GTNAC 2 cut(s) 380, 511
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 4 cut(s) 702, 763, 796, 834
MflI RGATCY 1 cut(s) 157
MluCI AATT 4 cut(s) 35, 426, 474, 603
MseI TTAA 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 659
MwoI GCNNNNNNNGC 2 cut(s) 107, 479
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 32, 139, 601
NlaIV GGNNCC 3 cut(s) 159, 252, 654
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 6 cut(s) 100, 148, 201, 570, 697, 743
Ppu21I YACGTR 1 cut(s) 617
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 159, 252, 654
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 440, 619, 675
RsaNI GTAC 3 cut(s) 439, 618, 674
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 6 cut(s) 99, 147, 200, 569, 696, 742
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 2 cut(s) 440, 675
SfaNI GCATC 4 cut(s) 169, 214, 454, 574
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 617
Sse9I AATT 4 cut(s) 35, 426, 474, 603
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 275, 330
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 4 cut(s) 455, 622, 688, 816
TaiI ACGT 3 cut(s) 619, 750, 777
TasI AATT 4 cut(s) 35, 426, 474, 603
TatI WGTACW 2 cut(s) 438, 673
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 460, 691
TseI GCWGC 6 cut(s) 98, 146, 199, 568, 695, 741
TspDTI ATGAA 4 cut(s) 17, 156, 230, 614
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 460, 691
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 613
XspI CTAG 2 cut(s) 275, 330
ZrmI AGTACT 2 cut(s) 440, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.