Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Forward (+)

82389045 .. 82392625

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG591200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATTGCCACAAAACTCATCAAGTTTCATGAGGAATTTGTGAGACAAGAGGCTTTATATATGCTTCAAAATGCTTTGGAAGGGTCTGGTGGTAGTGCTGCTACTTCAGCATACACCGAGGCATTTCGGCTCATTATGCGGTTTGCTGTTGGTGATAAATCATTTCTTGCCCTTGAGGATCCTGTTTCATCTGTCCGTGATGCAGAAGCATTGGGTTCGCTGCTTGCGCTTGGAATGAATCCTGATGCACAGGTTCAACCAAGAGGGGAGGGACCTTTTCCTCCAGCAAAGAAACTAGAAGGTGGTTTGCAAAGGCATTTAGCGTTGCCTTTCACAAAAGCAAGTGGCACTAGGTCAAAGGATGTGCGAGTTGGCATAACATTGTCTTGGGTGTTCTTCTTACAGGCAATTCGTTTGAAGTACTTGCATCCAGACAGTGAGCTTCAAAACTATGCAATTCAGGCTTGTGTTCTCTATATCCTTCGTGTTGGTGTTACCAATCAGATGACAGAACCTACTCAAAGGAGTTTTTTGGTTTTTCTTGGACAGCAGCTTATGTCTCCTGATGCCAGTCCTTCCATGAAAATTGCTGGTCTACGTACTGTCTCATATACCCTAAAAACTCTGGGAGAGGTTCCAGCTGAGTTCAAGGAAGTACTTGACAACAGTGTTGTTGCAGCATTATCTCATTCTTCTGAACTTGTAAGCTCTAGATTTCGCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.54

Weight (kDa)

7.85

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	595
AccII	CGCG	1 cut(s)	720
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	422, 601, 657
AgsI	TTSAA	5 cut(s)	68, 257, 418, 446, 649
AluBI	AGCT	5 cut(s)	442, 553, 641, 708, 725
AluI	AGCT	5 cut(s)	442, 553, 641, 708, 725
Alw26I	GTCTC	3 cut(s)	37, 564, 610
AlwI	GGATC	2 cut(s)	173, 186
ApeKI	GCWGC	4 cut(s)	98, 220, 550, 677
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	85, 207, 562, 689
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	3 cut(s)	37, 564, 610
BfaI	CTAG	3 cut(s)	296, 351, 711
BisI	GCNGC	4 cut(s)	99, 221, 551, 678
BlsI	GCNGC	4 cut(s)	100, 222, 552, 679
BmcAI	AGTACT	2 cut(s)	422, 657
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	180, 273, 636
BmsI	GCATC	4 cut(s)	190, 235, 436, 556
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	367, 427
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	85, 207, 562, 689
Bsh1236I	CGCG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	3 cut(s)	37, 564, 610
BsmFI	GGGAC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	178
Bsp68I	TCGCGA	1 cut(s)	720
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	180, 273, 636
BspPI	GGATC	2 cut(s)	173, 186
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	3 cut(s)	437, 604, 668
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	367, 427
BstFNI	CGCG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	3 cut(s)	37, 564, 610
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 136, 226, 461
BstSNI	TACGTA	1 cut(s)	599
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	85, 207, 562, 689
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	367, 427
BtsIMutI	CAGTG	2 cut(s)	442, 673
BtuMI	TCGCGA	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	421, 600, 656
CviAII	CATG	2 cut(s)	29, 580
CviJI	RGCY	8 cut(s)	53, 130, 442, 464, 553, 641, 708, 725
CviKI_1	RGCY	8 cut(s)	53, 130, 442, 464, 553, 641, 708, 725
CviQI	GTAC	3 cut(s)	421, 600, 656
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco105I	TACGTA	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	272
FaeI	CATG	2 cut(s)	32, 583
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	28, 579
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	99, 221, 551, 678
FokI	GGATG	2 cut(s)	374, 414
Fsp4HI	GCNGC	4 cut(s)	99, 221, 551, 678
FspBI	CTAG	3 cut(s)	296, 351, 711
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	99, 221, 551, 678
GsuI	CTGGAG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	32, 583
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	2 cut(s)	504, 697
Hpy188III	TCNNGA	6 cut(s)	29, 242, 431, 563, 711, 719
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	4 cut(s)	74, 293, 491, 585
HpyCH4III	ACNGT	3 cut(s)	437, 604, 668
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	6 cut(s)	203, 248, 310, 427, 455, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 136, 226, 461
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	2 cut(s)	32, 583
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	178
Lsp1109I	GCAGC	4 cut(s)	85, 207, 562, 689
LweI	GCATC	4 cut(s)	190, 235, 436, 556
MaeI	CTAG	3 cut(s)	296, 351, 711
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	388, 684
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	4 cut(s)	35, 408, 456, 585
MnlI	CCTC	8 cut(s)	25, 43, 112, 169, 257, 262, 291, 625
MspA1I	CMGCKG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	4 cut(s)	107, 136, 226, 461
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	32, 583
NlaIV	GGNNCC	3 cut(s)	180, 273, 636
NruI	TCGCGA	1 cut(s)	720
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	100, 222, 552, 679
Ppu21I	YACGTR	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	180, 273, 636
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	641
RruI	TCGCGA	1 cut(s)	720
RsaI	GTAC	3 cut(s)	422, 601, 657
RsaNI	GTAC	3 cut(s)	421, 600, 656
SatI	GCNGC	4 cut(s)	99, 221, 551, 678
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	2 cut(s)	422, 657
SfaNI	GCATC	4 cut(s)	190, 235, 436, 556
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	599
Sse9I	AATT	4 cut(s)	35, 408, 456, 585
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	3 cut(s)	296, 351, 711
TaaI	ACNGT	3 cut(s)	437, 604, 668
TaiI	ACGT	1 cut(s)	601
TasI	AATT	4 cut(s)	35, 408, 456, 585
TatI	WGTACW	2 cut(s)	420, 655
TfiI	GAWTC	1 cut(s)	238
TscAI	CASTG	2 cut(s)	442, 673
TseI	GCWGC	4 cut(s)	98, 220, 550, 677
TspDTI	ATGAA	4 cut(s)	17, 177, 251, 596
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	442, 673
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	3 cut(s)	296, 351, 711
ZrmI	AGTACT	2 cut(s)	422, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.