Rw2G047100

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017783
Physical Location & Seq
Forward (+)
74497114 .. 74507123
10010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047100.1

Sequence Viewer

Length: 732 bp
ATGATTGCCACAAAACTCATCAAGTTTCATGAGGAATTTGTGAGACAAGAGGCTTTATATATGCTTCAAAATGCTTTGGAAGGGTCTGGTGGTAGTGCTGCTACTTCAGCATACACCGAGGCATTTCGTCTCATCATGCGGTTTGCTGTTGGTGATAAATCATTTCTTGCCCTTGAGGATCCTGTTTCATCTGTCCGTGATGCAGAAGCATTGGGTTCGCTGCTTGCTCTTGGAATGAATCCTGATGCACAGGTTCAACCAAGAGGGAAGGGACCTTTTCCTCCAGCAAAGAAACTAGAAGGTGGTTTGCCAAGGCATTTAGCGTTGCCTTTCACAAAAGCAAGTGGCACTAGGTCAAAGGATGTGCGAGTTGGCATAACATTGTCTTGGGTGTTCTTGTTACAGGCAATTCGTTTGAAGTACTTGCATCCAGACAGTGAGCTTCAAAACTATGCAATTCAGGTTATGGACATGCTTCGTGCCGATACTTCTGTTGACGCCTACACTCTGGCTTGTGTTCTCTATATCCTTCGTGTTGGTGTTACCAATCAGATGACAGAACCTACTCAAAGGAGTTTTTTGTTTCCTTCCATGAAAATTGCTGGTCTACGTACTGTCTCATATACCCTAAAAACTCTGGGAGAGGTTCCAGCTGAGTTCAAGGAAGTACTTGAAAACACTGTTGTTGCAGCAGTATCTCATTCTTCTCAACTTGTTGATAGAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.59

Weight (kDa)

8.61

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 607
AciI CCGC 1 cut(s) 139
AclWI GGATC 2 cut(s) 173, 186
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 3 cut(s) 422, 613, 669
AgsI TTSAA 6 cut(s) 68, 257, 418, 446, 661, 674
AluBI AGCT 2 cut(s) 442, 653
AluI AGCT 2 cut(s) 442, 653
Alw26I GTCTC 3 cut(s) 37, 134, 622
AlwI GGATC 2 cut(s) 173, 186
ApeKI GCWGC 3 cut(s) 98, 220, 689
ApoI RAATTY 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BamHI GGATCC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 85, 207, 701
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 3 cut(s) 37, 134, 622
BfaI CTAG 2 cut(s) 296, 351
BisI GCNGC 3 cut(s) 99, 221, 690
BlsI GCNGC 3 cut(s) 100, 222, 691
BmcAI AGTACT 2 cut(s) 422, 669
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 3 cut(s) 180, 273, 648
BmsI GCATC 3 cut(s) 190, 235, 436
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 117, 311
BseDI CCNNGG 2 cut(s) 117, 311
BseGI GGATG 2 cut(s) 367, 427
BseMII CTCAG 1 cut(s) 645
BseXI GCAGC 3 cut(s) 85, 207, 701
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 37, 134, 622
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 646
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 180, 273, 648
BspPI GGATC 2 cut(s) 173, 186
BssECI CCNNGG 2 cut(s) 117, 311
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 3 cut(s) 437, 616, 682
BstACI GRCGYC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 367, 427
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 3 cut(s) 37, 134, 622
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 475
BstSNI TACGTA 1 cut(s) 611
BstV1I GCAGC 3 cut(s) 85, 207, 701
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 2 cut(s) 367, 427
BtsIMutI CAGTG 2 cut(s) 442, 678
Cac8I GCNNGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 506
Csp6I GTAC 3 cut(s) 421, 612, 668
CviAII CATG 4 cut(s) 29, 136, 472, 592
CviJI RGCY 4 cut(s) 53, 442, 512, 653
CviKI_1 RGCY 4 cut(s) 53, 442, 512, 653
CviQI GTAC 3 cut(s) 421, 612, 668
DdeI CTNAG 1 cut(s) 654
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco105I TACGTA 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 4 cut(s) 32, 139, 475, 595
FaqI GGGAC 1 cut(s) 285
FatI CATG 4 cut(s) 28, 135, 471, 591
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 99, 221, 690
FokI GGATG 2 cut(s) 374, 414
Fsp4HI GCNGC 3 cut(s) 99, 221, 690
FspBI CTAG 2 cut(s) 296, 351
GluI GCNGC 3 cut(s) 99, 221, 690
GsuI CTGGAG 1 cut(s) 267
HgaI GACGC 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 4 cut(s) 32, 139, 475, 595
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 496, 608
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 3 cut(s) 29, 242, 431
Hpy8I GTNNAC 2 cut(s) 496, 608
HpyAV CCTTC 5 cut(s) 74, 262, 293, 539, 597
HpyCH4III ACNGT 3 cut(s) 437, 616, 682
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 5 cut(s) 203, 248, 427, 455, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 1 cut(s) 610
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 4 cut(s) 32, 139, 475, 595
Kzo9I GATC 1 cut(s) 178
Lsp1109I GCAGC 3 cut(s) 85, 207, 701
LweI GCATC 3 cut(s) 190, 235, 436
MaeI CTAG 2 cut(s) 296, 351
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 2 cut(s) 399, 541
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 696
MflI RGATCY 1 cut(s) 178
MluCI AATT 4 cut(s) 35, 408, 456, 597
MnlI CCTC 8 cut(s) 25, 43, 112, 169, 257, 291, 637, 716
MspA1I CMGCKG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 178
NlaIII CATG 4 cut(s) 32, 139, 475, 595
NlaIV GGNNCC 3 cut(s) 180, 273, 648
NspI RCATGY 1 cut(s) 475
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 3 cut(s) 100, 222, 691
Ppu21I YACGTR 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
PspN4I GGNNCC 3 cut(s) 180, 273, 648
PspPI GGNCC 1 cut(s) 272
PspPPI RGGWCCY 1 cut(s) 272
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 3 cut(s) 422, 613, 669
RsaNI GTAC 3 cut(s) 421, 612, 668
SatI GCNGC 3 cut(s) 99, 221, 690
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 2 cut(s) 422, 669
SfaNI GCATC 3 cut(s) 190, 235, 436
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SnaBI TACGTA 1 cut(s) 611
Sse9I AATT 4 cut(s) 35, 408, 456, 597
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 296, 351
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 3 cut(s) 437, 616, 682
TaiI ACGT 1 cut(s) 613
TasI AATT 4 cut(s) 35, 408, 456, 597
TatI WGTACW 2 cut(s) 420, 667
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 2 cut(s) 442, 685
TseI GCWGC 3 cut(s) 98, 220, 689
TspDTI ATGAA 4 cut(s) 17, 177, 251, 608
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 442, 685
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 2 cut(s) 296, 351
ZrmI AGTACT 2 cut(s) 422, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.