Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Forward (+)

79777187 .. 79782178

Gene Structure 4992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG581300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATTGCCACAAAACTCATCAAGTTTCATGAGGAATTTGTGAGACAAGAGGCTTTATATATGCTTCAAAATGCTTTGGAAGGGTCTGGTGGTAGTGCTGCTACTTCAGCATACACCGAGGCATTTCGTCTCATCATGCGGTTTGCTGTTGGTGATAAATCATTTCTTGCCCTTGAGGATCCTGTTTCATCTGTCCGTGATGCATTTGCTGAAGCATTGGGTTCGCTGCTTGCTCTTGGAATGAATCCTGATGCACAGGTTCAACCAAGAGGGAAGGGACCTTTTCCTCCAGCAAAGAAACTAGAAGGTGGTTTGCCAAGGCATTTAGCGTTGCCTTTCACAAAAGCAAGTGGCACTAGGTCAAAGGATGTGCGAGTTGGCATAACATTGTCTTGGGTGTTCTTCTTACAGGCAATTCGTTTGAAGTACTTGCATCCAGACAGTGAGCTTCAAAACTATGCAATTCAGGCTTGTGTTCTCTATATCCTTCGTGTTGGTGTTACCAATCAGATGACAGAACCTACTCAAAGGAGTTTTTTGGTTTTTCTTGGACAGCAGCTTATGTCTCCTGATGCCAGTCCTTCCATGAAAATTGCTGGTCTACGTACTGTCTCATATACCCTAAAAACTCTGGGAGAGGTGACTGTGACTTTAGATATACATTTGAATTCCAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.82

Weight (kDa)

9.21

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	2 cut(s)	35, 667
AcuI	CTGAAG	2 cut(s)	90, 231
AfaI	GTAC	2 cut(s)	428, 607
AgsI	TTSAA	5 cut(s)	68, 263, 424, 452, 667
AluBI	AGCT	2 cut(s)	448, 559
AluI	AGCT	2 cut(s)	448, 559
Alw26I	GTCTC	4 cut(s)	37, 134, 570, 616
AlwI	GGATC	2 cut(s)	173, 186
ApeKI	GCWGC	3 cut(s)	98, 226, 556
ApoI	RAATTY	2 cut(s)	35, 667
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	164, 652
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	85, 213, 568
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BcoDI	GTCTC	4 cut(s)	37, 134, 570, 616
BfaI	CTAG	2 cut(s)	302, 357
BisI	GCNGC	3 cut(s)	99, 227, 557
BlsI	GCNGC	3 cut(s)	100, 228, 558
BmcAI	AGTACT	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	180, 279
BmsI	GCATC	4 cut(s)	190, 241, 442, 562
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	117, 317
Bse1I	ACTGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	117, 317
BseGI	GGATG	2 cut(s)	373, 433
BseNI	ACTGG	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	85, 213, 568
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	4 cut(s)	37, 134, 570, 616
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	180, 279
BspPI	GGATC	2 cut(s)	173, 186
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	117, 317
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	443, 610, 646
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	373, 433
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	4 cut(s)	37, 134, 570, 616
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 467
BstSNI	TACGTA	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	85, 213, 568
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	373, 433
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	427, 606
CviAII	CATG	3 cut(s)	29, 136, 586
CviJI	RGCY	4 cut(s)	53, 448, 470, 559
CviKI_1	RGCY	4 cut(s)	53, 448, 470, 559
CviQI	GTAC	2 cut(s)	427, 606
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco105I	TACGTA	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	2 cut(s)	90, 231
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	32, 139, 589
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	28, 135, 585
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	99, 227, 557
FokI	GGATG	2 cut(s)	380, 420
Fsp4HI	GCNGC	3 cut(s)	99, 227, 557
FspBI	CTAG	2 cut(s)	302, 357
GluI	GCNGC	3 cut(s)	99, 227, 557
GsuI	CTGGAG	1 cut(s)	273
Hin1II	CATG	3 cut(s)	32, 139, 589
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	2 cut(s)	164, 652
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	4 cut(s)	29, 248, 437, 569
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	5 cut(s)	74, 268, 299, 497, 591
HpyCH4III	ACNGT	3 cut(s)	443, 610, 646
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	203, 254, 433, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 467
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	32, 139, 589
Kzo9I	GATC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	85, 213, 568
LweI	GCATC	4 cut(s)	190, 241, 442, 562
MaeI	CTAG	2 cut(s)	302, 357
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	499, 640, 646
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	394
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	6 cut(s)	35, 414, 462, 591, 667, 673
MnlI	CCTC	7 cut(s)	25, 43, 112, 169, 263, 297, 631
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	107, 467
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	32, 139, 589
NlaIV	GGNNCC	2 cut(s)	180, 279
NmuCI	GTSAC	2 cut(s)	640, 646
NsiI	ATGCAT	1 cut(s)	205
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	100, 228, 558
Ppu21I	YACGTR	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	180, 279
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	428, 607
RsaNI	GTAC	2 cut(s)	427, 606
SaqAI	TTAA	1 cut(s)	679
SatI	GCNGC	3 cut(s)	99, 227, 557
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	428
SetI	ASST	9 cut(s)	261, 283, 310, 362, 450, 523, 561, 607, 642
SfaNI	GCATC	4 cut(s)	190, 241, 442, 562
SinI	GGWCC	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	605
Sse9I	AATT	6 cut(s)	35, 414, 462, 591, 667, 673
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	302, 357
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	3 cut(s)	443, 610, 646
TaiI	ACGT	1 cut(s)	607
TasI	AATT	6 cut(s)	35, 414, 462, 591, 667, 673
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	679
Tru9I	TTAA	1 cut(s)	679
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	640, 646
TseI	GCWGC	3 cut(s)	98, 226, 556
Tsp45I	GTSAC	2 cut(s)	640, 646
TspDTI	ATGAA	4 cut(s)	17, 177, 257, 602
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	35, 667
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	2 cut(s)	302, 357
ZrmI	AGTACT	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.