Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Forward (+)

79776296 .. 79776750

Gene Structure 455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG581200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCGATCTAGAAGATCAATGGCAACCATTTCCTTCGATCCAAGGCCTAATCTCCAAGCCACTAACAATCATAGTCATCAACATGGAGTTGTTGTTGAAGAAATTGAAGGCCTTATCAGAGTCCACAAAAATGGATACATAGAAAGGCCTTCAATTATCCCTAGTGTCCCTTGCACTACTGCAGCAGCTAGAGATGTTGTCATTGACAAATTCTCCAACTTGTGGGCGAGTATTTATGTTCCCAGCCCGGGGCCAATAACCTCCCGGTGCTTGTTTACTTTCATGGTGGAGGATTCTGTGTTGGCTCTGCTGCTTGGAGCTGCTACCATGAGTTCCTCAGCAACCTTGCTTGTAAAGCAAGTTGTGTCATCGTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

126

Amino Acids

13.71

Weight (kDa)

8.77

Isoelectric Point (pI)

68.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	222
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	222, 248, 249
AgsI	TTSAA	3 cut(s)	98, 107, 153
AluBI	AGCT	2 cut(s)	188, 320
AluI	AGCT	2 cut(s)	188, 320
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	4 cut(s)	44, 109, 146, 251
ApeKI	GCWGC	4 cut(s)	182, 185, 310, 320
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	3 cut(s)	248, 249, 265
AvaI	CYCGRG	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	337
BbvI	GCAGC	4 cut(s)	194, 197, 297, 307
BciVI	GTATCC	1 cut(s)	128
BcnI	CCSGG	3 cut(s)	248, 249, 265
BfaI	CTAG	3 cut(s)	9, 162, 189
BfmI	CTRYAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	183, 186, 311, 321
BlsI	GCNGC	4 cut(s)	184, 187, 312, 322
Bme1390I	CCNGG	3 cut(s)	248, 249, 265
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	248, 249, 265
Bpu10I	CCTNAGC	1 cut(s)	337
BpuMI	CCSGG	3 cut(s)	248, 249, 265
BsaJI	CCNNGG	3 cut(s)	41, 247, 248
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 197, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 248, 249
BseDI	CCNNGG	3 cut(s)	41, 247, 248
BseLI	CCNNNNNNNGG	3 cut(s)	222, 248, 249
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	4 cut(s)	194, 197, 297, 307
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	4 cut(s)	46, 111, 148, 253
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	248, 265
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	222, 248, 249
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	46, 111, 148, 253
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	5, 14, 37
BspANI	GGCC	4 cut(s)	46, 111, 148, 253
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	41, 247, 248
BssMI	GATC	3 cut(s)	5, 14, 37
BssT1I	CCWWGG	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	8, 17, 40
BstMBI	GATC	3 cut(s)	5, 14, 37
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	246, 247, 263
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	194, 197, 297, 307
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	4 cut(s)	46, 111, 148, 253
Cfr13I	GGNCC	1 cut(s)	251
Cfr9I	CCCGGG	1 cut(s)	247
CviAII	CATG	3 cut(s)	83, 283, 328
CviJI	RGCY	9 cut(s)	46, 59, 111, 148, 188, 246, 253, 305, 320
CviKI_1	RGCY	9 cut(s)	46, 59, 111, 148, 188, 246, 253, 305, 320
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	3 cut(s)	7, 16, 39
DpnII	GATC	3 cut(s)	5, 14, 37
Eco130I	CCWWGG	1 cut(s)	41
Eco147I	AGGCCT	3 cut(s)	46, 111, 148
Eco88I	CYCGRG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	86, 286, 331
FaiI	YATR	6 cut(s)	72, 84, 140, 237, 284, 329
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	82, 282, 327
Fnu4HI	GCNGC	4 cut(s)	183, 186, 311, 321
Fsp4HI	GCNGC	4 cut(s)	183, 186, 311, 321
FspBI	CTAG	3 cut(s)	9, 162, 189
GluI	GCNGC	4 cut(s)	183, 186, 311, 321
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	4 cut(s)	46, 111, 148, 253
HapII	CCGG	2 cut(s)	248, 265
Hin1II	CATG	3 cut(s)	86, 286, 331
HinfI	GANTC	2 cut(s)	120, 293
HpaII	CCGG	2 cut(s)	248, 265
Hpy166II	GTNNAC	2 cut(s)	124, 276
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	2 cut(s)	124, 276
HpyAV	CCTTC	3 cut(s)	43, 101, 159
HpyCH4V	TGCA	2 cut(s)	174, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	86, 286, 331
Kzo9I	GATC	3 cut(s)	5, 14, 37
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	3 cut(s)	256, 261, 278
Lsp1109I	GCAGC	4 cut(s)	194, 197, 297, 307
MaeI	CTAG	3 cut(s)	9, 162, 189
MalI	GATC	3 cut(s)	7, 16, 39
MboI	GATC	3 cut(s)	5, 14, 37
MboII	GAAGA	2 cut(s)	24, 110
MluCI	AATT	3 cut(s)	102, 153, 209
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	271, 283, 346
MslI	CAYNNNNRTG	2 cut(s)	81, 129
MspI	CCGG	2 cut(s)	248, 265
MspR9I	CCNGG	3 cut(s)	248, 249, 265
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	3 cut(s)	248, 249, 265
NdeII	GATC	3 cut(s)	5, 14, 37
NlaIII	CATG	3 cut(s)	86, 286, 331
NlaIV	GGNNCC	1 cut(s)	252
PceI	AGGCCT	3 cut(s)	46, 111, 148
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	184, 187, 312, 322
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	81, 129
SatI	GCNGC	4 cut(s)	183, 186, 311, 321
Sau3AI	GATC	3 cut(s)	5, 14, 37
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	248, 249, 265
SetI	ASST	4 cut(s)	190, 263, 322, 347
SfcI	CTRYAG	1 cut(s)	180
SmaI	CCCGGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	81, 129
Sse9I	AATT	3 cut(s)	102, 153, 209
SseBI	AGGCCT	3 cut(s)	46, 111, 148
SspMI	CTAG	3 cut(s)	9, 162, 189
StuI	AGGCCT	3 cut(s)	46, 111, 148
StyD4I	CCNGG	3 cut(s)	246, 247, 263
StyI	CCWWGG	1 cut(s)	41
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	102, 153, 209
TfiI	GAWTC	1 cut(s)	293
TseI	GCWGC	4 cut(s)	182, 185, 310, 320
TspDTI	ATGAA	1 cut(s)	271
TspMI	CCCGGG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	8
XmaI	CCCGGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	9, 162, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.