Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037540.1

Orthogroup ID

OG0017783

Physical Location & Seq

Genomic Coordinates Reverse (-)

15834 .. 17993

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037540.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcaaccatttccttcgatccaaggcctaatctccaagccactaacaatcatagtcatcaacatggagttgttgttgaagaaattgaaggccttatcagagtccacaaaaatggatacatagaaaggccttcaattatccctagtgtcccttgcactactgcagcagctagagatgttgtcattgacaaattctccaacttgtgggcgagtatttatgttcccagcccggggccaataacctcccggtgcttgtttactttcatggtggaggattctgtgttggctctgctgcttggagctgctaccatgagttcctcagcaaccttgcttgaatttgtgagacaagaggctttatatatgcttcaaaatgctttggaagggtctggtggtagtgctgctacttcagcatacaccgaggcatttcgtctcatcatgcggtttgctgttggtgataaatcatttcttgtcagaatcgctgctgcaagatgtttgaaggcatttgctattattggaggaccggaagcattgggttcgctgcttgctcttggaatgaatcctgatgcacaggttcaaccaagagggaagggaccttttcctccagcaaagaaactagaaggtggtttgcaaaggcatttagcgttgcctttcacaaaagcaagtggcactaggtcaaaggatgtgcgagttggcataacattgtcttgggtgttcttcttacaggtagtctgtgatacttatttcctccgcgagttttctgctatccatcttatattgggaatgtcttattgtaccattcattgcttcatgcaagtcttgtcatgtttgattcctcttgtgcataggaggcatgcacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.18

Weight (kDa)

9.02

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163391
rosa_laevigata	RLG00000021397
rosa_multiflora	Rmu_sc0002045.1_g000001 Rmu_sc0002045.1_g000002 Rmu_sc0037540.1_g000002
rosa_samantha	Rh2AG569200 Rh2BG581200 Rh2BG581300 Rh2CG550900 Rh2CG551000 Rh2DG591200
rosa_wichuraiana	Rw2G047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccII	CGCG	1 cut(s)	750
AciI	CCGC	2 cut(s)	439, 748
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	191, 335
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
AgsI	TTSAA	7 cut(s)	80, 89, 135, 335, 368, 496, 575
AluBI	AGCT	2 cut(s)	170, 302
AluI	AGCT	2 cut(s)	170, 302
Alw26I	GTCTC	2 cut(s)	337, 434
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	4 cut(s)	26, 91, 128, 233
ApeKI	GCWGC	8 cut(s)	164, 167, 292, 302, 398, 479, 482, 538
ApoI	RAATTY	2 cut(s)	191, 335
AspS9I	GGNCC	3 cut(s)	233, 518, 590
AsuC2I	CCSGG	3 cut(s)	230, 231, 247
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	518, 590
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	8 cut(s)	176, 179, 279, 289, 385, 466, 469, 525
BccI	CCATC	1 cut(s)	774
BcgI	CGANNNNNNTGC	4 cut(s)	516, 550, 740, 774
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	3 cut(s)	230, 231, 247
BcoDI	GTCTC	2 cut(s)	337, 434
BfaI	CTAG	4 cut(s)	144, 171, 614, 669
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	8 cut(s)	165, 168, 293, 303, 399, 480, 483, 539
BlsI	GCNGC	8 cut(s)	166, 169, 294, 304, 400, 481, 484, 540
Bme1390I	CCNGG	3 cut(s)	230, 231, 247
Bme18I	GGWCC	2 cut(s)	518, 590
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	233, 518, 590
BmiI	GGNNCC	2 cut(s)	234, 591
BmrFI	CCNGG	3 cut(s)	230, 231, 247
BmsI	GCATC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	319
BpuMI	CCSGG	3 cut(s)	230, 231, 247
BsaJI	CCNNGG	4 cut(s)	23, 229, 230, 417
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 230, 231
Bse3DI	GCAATG	1 cut(s)	799
BseDI	CCNNGG	4 cut(s)	23, 229, 230, 417
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	8 cut(s)	176, 179, 279, 289, 385, 466, 469, 525
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	4 cut(s)	28, 93, 130, 235
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	230, 247, 521
BslFI	GGGAC	2 cut(s)	134, 603
BslI	CCNNNNNNNGG	3 cut(s)	204, 230, 231
BsmAI	GTCTC	2 cut(s)	337, 434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	134, 603
BsnI	GGCC	4 cut(s)	28, 93, 130, 235
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	439, 748
BspANI	GGCC	4 cut(s)	28, 93, 130, 235
BspCNI	CTCAG	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	234, 591
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	799
BssECI	CCNNGG	4 cut(s)	23, 229, 230, 417
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	543, 852
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	1 cut(s)	750
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	337, 434
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 847
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	3 cut(s)	228, 229, 245
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	8 cut(s)	176, 179, 279, 289, 385, 466, 469, 525
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	4 cut(s)	28, 93, 130, 235
BtsCI	GGATG	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	543, 852
Cfr13I	GGNCC	3 cut(s)	233, 518, 590
Cfr9I	CCCGGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	7 cut(s)	65, 265, 310, 436, 808, 822, 851
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	3 cut(s)	28, 93, 130
Eco47I	GGWCC	2 cut(s)	518, 590
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	7 cut(s)	68, 268, 313, 439, 811, 825, 854
FaqI	GGGAC	2 cut(s)	134, 603
FatI	CATG	7 cut(s)	64, 264, 309, 435, 807, 821, 850
Fnu4HI	GCNGC	8 cut(s)	165, 168, 293, 303, 399, 480, 483, 539
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	8 cut(s)	165, 168, 293, 303, 399, 480, 483, 539
FspBI	CTAG	4 cut(s)	144, 171, 614, 669
GluI	GCNGC	8 cut(s)	165, 168, 293, 303, 399, 480, 483, 539
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	4 cut(s)	28, 93, 130, 235
HapII	CCGG	3 cut(s)	230, 247, 521
Hin1II	CATG	7 cut(s)	68, 268, 313, 439, 811, 825, 854
HinfI	GANTC	5 cut(s)	102, 275, 474, 556, 829
HpaII	CCGG	3 cut(s)	230, 247, 521
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	106, 258
Hpy188I	TCNGA	2 cut(s)	101, 473
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	2 cut(s)	106, 258
HpyAV	CCTTC	7 cut(s)	25, 83, 141, 374, 490, 580, 611
HpyCH4V	TGCA	8 cut(s)	156, 164, 485, 566, 628, 811, 841, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 847
HpyF3I	CTNAG	1 cut(s)	319
Hsp92II	CATG	7 cut(s)	68, 268, 313, 439, 811, 825, 854
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	9 cut(s)	238, 243, 260, 372, 534, 554, 573, 615, 707
Lsp1109I	GCAGC	8 cut(s)	176, 179, 279, 289, 385, 466, 469, 525
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	4 cut(s)	144, 171, 614, 669
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	92, 706
MluCI	AATT	4 cut(s)	84, 135, 191, 335
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	63, 111
MspI	CCGG	3 cut(s)	230, 247, 521
MspR9I	CCNGG	3 cut(s)	230, 231, 247
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	407, 847
NciI	CCSGG	3 cut(s)	230, 231, 247
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	7 cut(s)	68, 268, 313, 439, 811, 825, 854
NlaIV	GGNNCC	2 cut(s)	234, 591
NspI	RCATGY	1 cut(s)	854
PaeI	GCATGC	1 cut(s)	854
PceI	AGGCCT	3 cut(s)	28, 93, 130
PfeI	GAWTC	4 cut(s)	275, 474, 556, 829
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	8 cut(s)	166, 169, 294, 304, 400, 481, 484, 540
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	234, 591
PspPI	GGNCC	3 cut(s)	233, 518, 590
PspPPI	RGGWCCY	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	2 cut(s)	63, 111
SatI	GCNGC	8 cut(s)	165, 168, 293, 303, 399, 480, 483, 539
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	3 cut(s)	233, 518, 590
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	3 cut(s)	230, 231, 247
SetI	ASST	9 cut(s)	172, 245, 304, 329, 573, 595, 622, 674, 726
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	518, 590
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	63, 111
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	4 cut(s)	84, 135, 191, 335
SseBI	AGGCCT	3 cut(s)	28, 93, 130
SsiI	CCGC	2 cut(s)	439, 748
SspMI	CTAG	4 cut(s)	144, 171, 614, 669
StuI	AGGCCT	3 cut(s)	28, 93, 130
StyD4I	CCNGG	3 cut(s)	228, 229, 245
StyI	CCWWGG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	18
TasI	AATT	4 cut(s)	84, 135, 191, 335
TfiI	GAWTC	4 cut(s)	275, 474, 556, 829
TseI	GCWGC	8 cut(s)	164, 167, 292, 302, 398, 479, 482, 538
TspDTI	ATGAA	4 cut(s)	253, 569, 788, 796
TspMI	CCCGGG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	2 cut(s)	518, 590
XapI	RAATTY	2 cut(s)	191, 335
XceI	RCATGY	1 cut(s)	854
XmaI	CCCGGG	1 cut(s)	229
XspI	CTAG	4 cut(s)	144, 171, 614, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.