RchiOBHm_Chr3g0450091

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007209
Physical Location & Seq
Reverse (-)
1737694 .. 1740894
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41743

Sequence Viewer

Length: 930 bp
ATGAAGAAAGCAGAATACTTCAGCAAGGACTTTGACTGGGACGAGCTGAGAGTCGAGGTGGAAAACGACCCGTCGTTTAGCTACCATTTGCTCCCATTCCAACCTTCTCTTTCAGTTGCAGAACAAGGTGAATCTCAACCGTGGAATGACTTTCATAACCGCCATTCATCTGGGAAGTTCTTCAAGGAAAGGCGATATTTGTTGCAAGAATTCCCTGAACTAGTTAGCTGTGAGGAGAATTCTAGGGTTTTGGAGGTGGGGTGTGGCAATGGCAGCACTGTTCTTCCAATGTTGAGGGGCAACGAGAAAGTCACGGTTTATGCATGTGATTGGAGCACTGAGGCCCTTGAGAGGGCTAAGGAGACGATTTATGCTTCTAACATTGTTTCTATCGAGCATCGTTTCCATACGTTTTGTTGTGATTTCTCTACCTCTGGGTTTCCAACATGGTTGACCTACAATCCTTGTCAAGCAAATTTTGAACAAACTTCAGATGGTAGAGGGAATAGTGAGACCTGTCTTAATGATTCAAGTTCATTGAAAGAAAGCAGACGTTGCATTGGTGGGGTTGATTTTGTTACCTTGATATTCACACTGTCGGCATTATCACTTCAGAGGATGCCAAAGTCCATCAAGGAGTGTTTTTCTGTTATGAGACCTGGAGGCATGCTTCTATTTAGGGATTATGGCCTTTATGACATGAGCATGCTTCGGTTTGAGATGGACAAAAGAGTGGGATTCAGGGAGTATATGCGATCAGATGGAACTCGTTCTTATTTCTTCTCATTGGATACTGTAAGGGATCTATTTATGGGAGCAGGCTTTATTGAGCTTGAGCTTGAATACTGCTGTGTTAAGTCGCTCAATCGTCGAAATGGGAAGAGCATGCGAAGGGTGTGGGTTCACGGAAAGTTCCAAAAGCCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_12 Methyltransf_23

Protein Analysis

309

Amino Acids

35.84

Weight (kDa)

6.13

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 62 - 275 9e-14 Methyltransferase domain
MTS PF05175 65 - 128 6.3e-06 Methyltransferase small domain
Methyltransf_31 PF13847 79 - 230 6.1e-07 Methyltransferase domain
Methyltransf_25 PF13649 83 - 134 1.2e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 810
AcsI RAATTY 3 cut(s) 209, 238, 475
AcuI CTGAAG 3 cut(s) 4, 474, 596
AfiI CCNNNNNNNGG 2 cut(s) 351, 352
AgsI TTSAA 5 cut(s) 184, 482, 531, 541, 842
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 5 cut(s) 46, 81, 228, 832, 838
AluI AGCT 5 cut(s) 46, 81, 228, 832, 838
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 356, 506, 649
AlwI GGATC 1 cut(s) 810
AoxI GGCC 2 cut(s) 342, 688
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 3 cut(s) 209, 238, 475
Asp700I GAANNNNTTC 2 cut(s) 179, 769
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 285
BccI CCATC 4 cut(s) 488, 638, 715, 755
BciT130I CCWGG 1 cut(s) 660
BciVI GTATCC 1 cut(s) 784
BcoDI GTCTC 3 cut(s) 356, 506, 649
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 243
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 406, 609
BmuI ACTGGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 368, 854
BsaI GGTCTC 2 cut(s) 506, 649
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 352
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 624
BseLI CCNNNNNNNGG 2 cut(s) 351, 352
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 38, 330
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 2 cut(s) 344, 690
BsiHKAI GWGCWC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 351, 352
BsmAI GTCTC 3 cut(s) 356, 506, 649
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 2 cut(s) 344, 690
Bso31I GGTCTC 2 cut(s) 506, 649
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 755, 802
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 344, 690
BspCNI CTCAG 2 cut(s) 39, 331
BspPI GGATC 1 cut(s) 810
BspQI GCTCTTC 1 cut(s) 875
BspTNI GGTCTC 2 cut(s) 506, 649
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 755, 802
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 5 cut(s) 141, 280, 316, 597, 796
Bst6I CTCTTC 1 cut(s) 875
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 4 cut(s) 668, 707, 820, 887
BstDEI CTNAG 3 cut(s) 47, 339, 357
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 624
BstKTI GATC 2 cut(s) 758, 805
BstMAI GTCTC 3 cut(s) 356, 506, 649
BstMBI GATC 2 cut(s) 755, 802
BstMWI GCNNNNNNNGC 2 cut(s) 273, 555
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 4 cut(s) 327, 670, 709, 889
BstSCI CCNGG 1 cut(s) 658
BstV1I GCAGC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 802
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 1 cut(s) 802
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 2 cut(s) 344, 690
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 276, 336, 593
Cac8I GCNNGC 4 cut(s) 668, 707, 820, 887
Cfr13I GGNCC 1 cut(s) 343
CviAII CATG 6 cut(s) 324, 447, 667, 700, 706, 886
DdeI CTNAG 3 cut(s) 47, 339, 357
DpnI GATC 2 cut(s) 757, 804
DpnII GATC 2 cut(s) 755, 802
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Eco31I GGTCTC 2 cut(s) 506, 649
Eco57I CTGAAG 3 cut(s) 4, 474, 596
EcoO109I RGGNCCY 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 209, 238
EcoRII CCWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 6 cut(s) 327, 450, 670, 703, 709, 889
FaqI GGGAC 1 cut(s) 53
FatI CATG 6 cut(s) 323, 446, 666, 699, 705, 885
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 631
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 221, 243
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 2 cut(s) 344, 690
Hin1II CATG 6 cut(s) 327, 450, 670, 703, 709, 889
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 4 cut(s) 51, 131, 527, 738
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 453, 904
Hpy188I TCNGA 3 cut(s) 493, 615, 760
Hpy8I GTNNAC 2 cut(s) 453, 904
Hpy99I CGWCG 2 cut(s) 76, 873
HpyAV CCTTC 2 cut(s) 114, 885
HpyCH4III ACNGT 5 cut(s) 141, 280, 316, 597, 796
HpyCH4IV ACGT 2 cut(s) 410, 553
HpyCH4V TGCA 4 cut(s) 119, 205, 323, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 555
HpyF3I CTNAG 3 cut(s) 47, 339, 357
HpySE526I ACGT 2 cut(s) 410, 553
Hsp92II CATG 6 cut(s) 327, 450, 670, 703, 709, 889
Kzo9I GATC 2 cut(s) 755, 802
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 3 cut(s) 96, 333, 815
LpnPI CCDG 9 cut(s) 22, 156, 228, 420, 529, 645, 672, 727, 804
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 406, 609
MaeI CTAG 2 cut(s) 221, 243
MaeII ACGT 2 cut(s) 410, 553
MaeIII GTNAC 2 cut(s) 310, 577
MalI GATC 2 cut(s) 757, 804
MboI GATC 2 cut(s) 755, 802
MboII GAAGA 5 cut(s) 16, 172, 275, 772, 892
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 3 cut(s) 209, 238, 475
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 124, 467
Mph1103I ATGCAT 1 cut(s) 325
MroXI GAANNNNTTC 2 cut(s) 179, 769
MseI TTAA 2 cut(s) 522, 855
MslI CAYNNNNRTG 1 cut(s) 704
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 273, 555
NdeII GATC 2 cut(s) 755, 802
NlaIII CATG 6 cut(s) 327, 450, 670, 703, 709, 889
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 4 cut(s) 327, 670, 709, 889
PaeI GCATGC 3 cut(s) 670, 709, 889
PciSI GCTCTTC 1 cut(s) 875
PdmI GAANNNNTTC 2 cut(s) 179, 769
PfeI GAWTC 3 cut(s) 131, 527, 738
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 2 cut(s) 522, 855
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 755, 802
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 338
SfaNI GCATC 2 cut(s) 406, 609
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 2 cut(s) 347, 833
SmoI CTYRAG 2 cut(s) 347, 833
SpeI ACTAGT 1 cut(s) 220
SphI GCATGC 3 cut(s) 670, 709, 889
Sse9I AATT 3 cut(s) 209, 238, 475
SsiI CCGC 1 cut(s) 160
SspMI CTAG 2 cut(s) 221, 243
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 5 cut(s) 141, 280, 316, 597, 796
TaiI ACGT 2 cut(s) 413, 556
TaqI TCGA 3 cut(s) 54, 393, 871
TasI AATT 3 cut(s) 209, 238, 475
TfiI GAWTC 3 cut(s) 131, 527, 738
Tru1I TTAA 2 cut(s) 522, 855
Tru9I TTAA 2 cut(s) 522, 855
TscAI CASTG 3 cut(s) 283, 343, 600
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 17, 143, 156, 525
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 3 cut(s) 283, 343, 600
XapI RAATTY 3 cut(s) 209, 238, 475
XceI RCATGY 4 cut(s) 327, 670, 709, 889
XmnI GAANNNNTTC 2 cut(s) 179, 769
XspI CTAG 2 cut(s) 221, 243
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.