Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007209

Physical Location & Seq

Genomic Coordinates Reverse (-)

1663309 .. 1666726

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGAAAGCAGAATACTTCAGCAAGGACTTTGACTGGGACGAGCTGAGAGTCGAGGTGGAAAACGACCCGTCGTTTAGCTACCATTTGCTCCCATTCCAACCTTCTCTTTCAGTTGCAGAACAAGCTGAATCTCAACCGTGGAATGACTTTCATCACCGCCATTCATCTGGGAAGTTCTTCAAGGAAAGGCGATATTTGTTGCAAGAATTCCCTGAACTAGTTAGCTGTGAGGAGAATTCTAGGGTTTTGGAGGTGGGGTGTGGCAATGGCAGCACTGTTCTTCCAATGTTGAGGGGCAACGAGAAAGTCATGGTTTATGCATGTGATTGGAGCACTGAGGCCCTTGAGAGGGCTAAGGAGACGATTTATGCTTCTAACATTGTTTCTATCGAGCATCGTTTCCATACATTTTGTTGTGATTTCTCTACCTCTGGGTTTCCAACATGGTTGACCTACAATCCTTGTCAAGCAAATTTTGAACAAACTTCAGATGGTAGAGGGAATAGTGAAACCTGTCTTAATGATTCAAGTTCATTGAAAGAAAGCAGATGTTGCATTGGTGGGGTTGATTTTGTTACCTTGGTAAGCACCCATTACATTAAACTGGGATATTTTAGATTAACCTTCGATAATATAGAACCTAAAAGAACAACATGCTATCTGATATCAGTCTCCTTGTCCTTTGAAATTTGTAGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_12 Methyltransf_23

Protein Analysis

234

Amino Acids

26.9

Weight (kDa)

5.11

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTS	PF05175	65 - 128	8.3e-06	Methyltransferase small domain
Methyltransf_31	PF13847	79 - 123	5.6e-06	Methyltransferase domain
Methyltransf_25	PF13649	83 - 134	1.9e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54650 AT1G54650 AT1G54650
fragaria_vesca	FvH4_6g02330 FvH4_6g02330 FvH4_6g02330 FvH4_6g02330 FvH4_6g02330 FvH4_6g02330 FvH4_6g02330
malus_domestica	MD04G1230000.v1.1
prunus_persica	Prupe.6G348100_v2.0.a1 Prupe.6G348100_v2.0.a1 Prupe.6G348100_v2.0.a1 Prupe.6G348100_v2.0.a1
pyrus_communis	pycom04g20390
rosa_chinensis	RchiOBHm_Chr3g0450091
rosa_laevigata	RLG00000025757
rosa_multiflora	Rmu_co8435467.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427870
rosa_samantha	Rh3AG024600 Rh3BG025200 Rh3CG024100 Rh3DG025200
rosa_wichuraiana	Rw3G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	4 cut(s)	209, 238, 475, 690
AcuI	CTGAAG	2 cut(s)	4, 474
AfiI	CCNNNNNNNGG	2 cut(s)	351, 352
AgsI	TTSAA	5 cut(s)	184, 482, 531, 541, 689
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	4 cut(s)	46, 81, 128, 228
AluI	AGCT	4 cut(s)	46, 81, 128, 228
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	356, 679
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	4 cut(s)	209, 238, 475, 690
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	356, 679
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	2 cut(s)	221, 243
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	343
BmrI	ACTGGG	2 cut(s)	46, 617
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	2 cut(s)	46, 617
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	140, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 352
Bse1I	ACTGG	2 cut(s)	41, 612
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	140, 582
BseLI	CCNNNNNNNGG	2 cut(s)	351, 352
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	38, 330
BseNI	ACTGG	2 cut(s)	41, 612
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	351, 352
BsmAI	GTCTC	2 cut(s)	356, 679
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	338
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	39, 331
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	41, 612
BssECI	CCNNGG	2 cut(s)	140, 582
BssT1I	CCWWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	141, 280
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	47, 339, 357
BstDSI	CCRYGG	1 cut(s)	140
BstMAI	GTCTC	2 cut(s)	356, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 273, 555
BstNSI	RCATGY	2 cut(s)	327, 660
BstV1I	GCAGC	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	276, 336
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	4 cut(s)	313, 324, 447, 657
CviJI	RGCY	7 cut(s)	46, 81, 128, 228, 344, 356, 699
CviKI_1	RGCY	7 cut(s)	46, 81, 128, 228, 344, 356, 699
DdeI	CTNAG	3 cut(s)	47, 339, 357
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	669
Eco57I	CTGAAG	2 cut(s)	4, 474
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	2 cut(s)	209, 238
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	582
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	4 cut(s)	316, 327, 450, 660
FaiI	YATR	8 cut(s)	314, 321, 325, 372, 408, 448, 638, 658
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	4 cut(s)	312, 323, 446, 656
Fnu4HI	GCNGC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	2 cut(s)	221, 243
GluI	GCNGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	316, 327, 450, 660
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	3 cut(s)	51, 131, 527
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	493, 666, 704
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	114, 637
HpyCH4III	ACNGT	2 cut(s)	141, 280
HpyCH4V	TGCA	4 cut(s)	119, 205, 323, 558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 273, 555
HpyF3I	CTNAG	3 cut(s)	47, 339, 357
Hsp92II	CATG	4 cut(s)	316, 327, 450, 660
LmnI	GCTCC	2 cut(s)	96, 333
LpnPI	CCDG	6 cut(s)	22, 156, 228, 420, 529, 593
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	221, 243
MaeIII	GTNAC	1 cut(s)	577
MboII	GAAGA	3 cut(s)	16, 172, 275
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	4 cut(s)	209, 238, 475, 690
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	124, 467
MnlI	CCTC	8 cut(s)	49, 226, 247, 288, 334, 345, 442, 494
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	522, 603, 623
MwoI	GCNNNNNNNGC	3 cut(s)	125, 273, 555
NlaIII	CATG	4 cut(s)	316, 327, 450, 660
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	327, 660
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	131, 527
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	522, 603, 623
SatI	GCNGC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	4 cut(s)	209, 238, 475, 690
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	221, 243
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	141, 280
TaqI	TCGA	3 cut(s)	54, 393, 630
TasI	AATT	4 cut(s)	209, 238, 475, 690
TfiI	GAWTC	2 cut(s)	131, 527
Tru1I	TTAA	3 cut(s)	522, 603, 623
Tru9I	TTAA	3 cut(s)	522, 603, 623
TscAI	CASTG	2 cut(s)	283, 343
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	4 cut(s)	17, 143, 156, 525
TspRI	CASTG	2 cut(s)	283, 343
XapI	RAATTY	4 cut(s)	209, 238, 475, 690
XceI	RCATGY	2 cut(s)	327, 660
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	2 cut(s)	221, 243
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.