RchiOBHm_Chr3g0453031

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016446
Physical Location & Seq
Forward (+)
3560447 .. 3562024
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42014

Sequence Viewer

Length: 984 bp
ATGCAAAACCGTATCGAAGAGGGAAGGAATAATTTGATTAGGGTTGAGAAAAGTATTAGGGAAATGGATATCAAAGTGAAGACTTCTATGGAGTATTGGTCCGGTAAGGTTGATTTAAAAGAGAGGCAAATTGAAGGACTGCTCATGCCAAATTTGGAACAACTTCTTCTTGCTTATAACATGATCAAAGAATACTTCAAAGAAGTTGAAAGGAAAGAGAGGGGACTGAAACAACAGGCCAAAGACCTTGAATCAAAAGAGAGAGAAGTTGCTTTGAAAGTTGATGAACTTAAGCTGACTGAAACAAGGGTTAAAAAACGCCTCAATAATGTTCAGTTGAAAGAAAAGCATTTTGGTTCACTGGAAAAGTCATTAAAAGCAGACAAACAGCATTTGGGTTCACTCCTAAAGTCCACAGAAGAGTGCAAAAAGGATTTGGCTTCAATATCCCATCAACTTCAGATGAAAGAAAGGGAGCTTGCACAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTTCTTCTCAAGCGAAAACTAAGCATTTGGAACCTGCCCCTGCTGATAACAATGCCACTGTTCCTTCATCTACAATTGATCATTCCTGCATCAATATAGATGTGACGTCCAACAAAGAGGAACCAGAATCTTCACCGACTAGAAATGCAGCAAATCTTCAACCAAATACCACCAGAGATGACAGGAATGTGCCAGGGTTGCTAAATGAGAATTTTAGTTGTAATCATTCAGTACAGAGTGACTTGGCTGCTTATCTTCAGTCAGTACCAGACCCAGCTAAAGTTGTGTTGAACAGCATGCGAAATTCTATTAGGCCATACTTGAGGAAGGGATATTTTGAAGAAAGTGTAATGTCACGAAACATTTCCTTATTGAAGGAGCTAATGATTGTTTCACCGCATGTTGGATCCCATATGAAAGAAAATGCAAGATATCTAGCAACCCAGTGGAAAATAAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

327

Amino Acids

37.65

Weight (kDa)

9.14

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 241 - 326 5.9e-07 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AatII GACGTC 1 cut(s) 629
Acc36I ACCTGC 1 cut(s) 562
AciI CCGC 1 cut(s) 917
AclWI GGATC 2 cut(s) 921, 934
AcsI RAATTY 3 cut(s) 151, 730, 823
AcuI CTGAAG 2 cut(s) 443, 761
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 2 cut(s) 753, 786
AfiI CCNNNNNNNGG 1 cut(s) 923
AflII CTTAAG 1 cut(s) 290
AjnI CCWGG 1 cut(s) 712
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 5 cut(s) 295, 478, 499, 797, 901
AluI AGCT 5 cut(s) 295, 478, 499, 797, 901
AlwI GGATC 2 cut(s) 921, 934
AoxI GGCC 3 cut(s) 237, 489, 833
ApeKI GCWGC 2 cut(s) 668, 767
ApoI RAATTY 3 cut(s) 151, 730, 823
Asp700I GAANNNNTTC 2 cut(s) 162, 883
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 645, 906
AvaII GGWCC 1 cut(s) 99
BamHI GGATCC 1 cut(s) 926
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 680, 754
BccI CCATC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 714
BclI TGATCA 2 cut(s) 183, 598
BfaI CTAG 2 cut(s) 660, 956
BfrI CTTAAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 2 cut(s) 669, 768
BlsI GCNGC 2 cut(s) 670, 769
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 3 cut(s) 552, 642, 928
BmrFI CCNGG 1 cut(s) 714
BmrI ACTGGG 1 cut(s) 958
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 958
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 513, 862
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 713
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 923
Bse1I ACTGG 2 cut(s) 366, 964
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 713
BseLI CCNNNNNNNGG 1 cut(s) 923
BseNI ACTGG 2 cut(s) 366, 964
BseXI GCAGC 2 cut(s) 680, 754
BseYI CCCAGC 1 cut(s) 793
BshFI GGCC 3 cut(s) 239, 491, 835
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 923
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 3 cut(s) 239, 491, 835
Bsp143I GATC 3 cut(s) 183, 598, 926
BspACI CCGC 1 cut(s) 917
BspANI GGCC 3 cut(s) 239, 491, 835
BspLI GGNNCC 3 cut(s) 552, 642, 928
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 2 cut(s) 921, 934
BspTI CTTAAG 1 cut(s) 290
BsrI ACTGG 2 cut(s) 366, 964
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 3 cut(s) 183, 598, 926
BssNI GRCGYC 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 2 cut(s) 11, 580
Bst6I CTCTTC 2 cut(s) 12, 414
BstACI GRCGYC 1 cut(s) 626
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 480, 489, 818
BstDEI CTNAG 1 cut(s) 540
BstKTI GATC 3 cut(s) 186, 601, 929
BstMBI GATC 3 cut(s) 183, 598, 926
BstMWI GCNNNNNNNGC 3 cut(s) 484, 488, 718
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 820, 923
BstSCI CCNGG 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 680, 754
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 3 cut(s) 239, 491, 835
BtsIMutI CAGTG 3 cut(s) 359, 576, 971
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 3 cut(s) 480, 489, 818
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 752, 785
CviAII CATG 4 cut(s) 145, 181, 817, 920
CviQI GTAC 2 cut(s) 752, 785
DdeI CTNAG 1 cut(s) 540
DpnI GATC 3 cut(s) 185, 600, 928
DpnII GATC 3 cut(s) 183, 598, 926
DraI TTTAAA 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 12, 414
EarI CTCTTC 2 cut(s) 12, 414
Eco32I GATATC 2 cut(s) 70, 953
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 443, 761
EcoRII CCWGG 1 cut(s) 712
EcoRV GATATC 2 cut(s) 70, 953
FaeI CATG 4 cut(s) 148, 184, 820, 923
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 144, 180, 816, 919
FauNDI CATATG 1 cut(s) 933
FbaI TGATCA 2 cut(s) 183, 598
Fnu4HI GCNGC 2 cut(s) 669, 768
Fsp4HI GCNGC 2 cut(s) 669, 768
FspBI CTAG 2 cut(s) 660, 956
GluI GCNGC 2 cut(s) 669, 768
GsaI CCCAGC 1 cut(s) 797
HaeIII GGCC 3 cut(s) 239, 491, 835
HapII CCGG 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 4 cut(s) 148, 184, 820, 923
HinfI GANTC 2 cut(s) 251, 647
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 645, 906
Hpy166II GTNNAC 3 cut(s) 359, 401, 414
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 1 cut(s) 876
Hpy8I GTNNAC 3 cut(s) 359, 401, 414
HpyAV CCTTC 5 cut(s) 18, 128, 594, 841, 889
HpyCH4III ACNGT 2 cut(s) 11, 580
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 6 cut(s) 4, 426, 482, 609, 668, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 484, 488, 718
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 626
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 4 cut(s) 148, 184, 820, 923
Ksp22I TGATCA 2 cut(s) 183, 598
Kzo9I GATC 3 cut(s) 183, 598, 926
LmnI GCTCC 2 cut(s) 475, 898
Lsp1109I GCAGC 2 cut(s) 680, 754
LweI GCATC 1 cut(s) 618
MaeI CTAG 2 cut(s) 660, 956
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 3 cut(s) 622, 758, 873
MalI GATC 3 cut(s) 185, 600, 928
MboI GATC 3 cut(s) 183, 598, 926
MboII GAAGA 9 cut(s) 29, 91, 158, 431, 516, 642, 668, 767, 872
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 926
MluCI AATT 8 cut(s) 31, 129, 151, 503, 518, 594, 730, 823
MmeI TCCRAC 2 cut(s) 654, 904
MnlI CCTC 6 cut(s) 13, 117, 213, 332, 631, 837
MroXI GAANNNNTTC 2 cut(s) 162, 883
MseI TTAA 4 cut(s) 116, 291, 312, 374
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 484, 488, 718
NdeI CATATG 1 cut(s) 933
NdeII GATC 3 cut(s) 183, 598, 926
NlaIII CATG 4 cut(s) 148, 184, 820, 923
NlaIV GGNNCC 3 cut(s) 552, 642, 928
NmuCI GTSAC 3 cut(s) 622, 758, 873
NspI RCATGY 2 cut(s) 820, 923
PaeI GCATGC 1 cut(s) 820
PdmI GAANNNNTTC 2 cut(s) 162, 883
PfeI GAWTC 2 cut(s) 251, 647
PkrI GCNGC 2 cut(s) 670, 769
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 712
PspFI CCCAGC 1 cut(s) 793
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 552, 642, 928
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 2 cut(s) 753, 786
RsaNI GTAC 2 cut(s) 752, 785
SaqAI TTAA 4 cut(s) 116, 291, 312, 374
SatI GCNGC 2 cut(s) 669, 768
Sau3AI GATC 3 cut(s) 183, 598, 926
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 714
SetI ASST 9 cut(s) 111, 249, 297, 480, 501, 556, 629, 799, 903
SfaNI GCATC 1 cut(s) 618
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 3 cut(s) 290, 528, 841
SmoI CTYRAG 3 cut(s) 290, 528, 841
SphI GCATGC 1 cut(s) 820
Sse9I AATT 8 cut(s) 31, 129, 151, 503, 518, 594, 730, 823
SsiI CCGC 1 cut(s) 917
SspMI CTAG 2 cut(s) 660, 956
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 11, 580
TaiI ACGT 1 cut(s) 629
TaqI TCGA 1 cut(s) 15
TasI AATT 8 cut(s) 31, 129, 151, 503, 518, 594, 730, 823
TatI WGTACW 1 cut(s) 751
TfiI GAWTC 2 cut(s) 251, 647
Tru1I TTAA 4 cut(s) 116, 291, 312, 374
Tru9I TTAA 4 cut(s) 116, 291, 312, 374
TscAI CASTG 3 cut(s) 366, 583, 971
TseFI GTSAC 3 cut(s) 622, 758, 873
TseI GCWGC 2 cut(s) 668, 767
Tsp45I GTSAC 3 cut(s) 622, 758, 873
TspDTI ATGAA 4 cut(s) 300, 479, 576, 950
TspRI CASTG 3 cut(s) 366, 583, 971
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 151, 730, 823
XceI RCATGY 2 cut(s) 820, 923
XmnI GAANNNNTTC 2 cut(s) 162, 883
XspI CTAG 2 cut(s) 660, 956
ZraI GACGTC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.