Rh3DG049900

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016446
Physical Location & Seq
Forward (+)
3361969 .. 3362674
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG049900.1

Sequence Viewer

Length: 504 bp
ATGCGAAATTCTATTAGGCCATACTTGAGGAAGGGATATTTTGAAGAAAGTGTAATGTCACAAAACATTTCCTTATTGAAGGAGCTAATGATTGTTTCACCGCATGTTGGATCCCATCTGAAAGAAAATGCAAGATATCTAGCAACCCAGTGGAAAATAAAGATGCGAGGCAATACTGAGAATTCAGTGGAGAGTTTGGCATATTTTCTGTTTATAACTATGTATGAGTTGGATTTTATGTTGAATGGAGATGAGATTGTAAAGCTTCTTCTGGTGATTTCTCAGACAATTACGGCTCTAGAATTATGTCAGACACATGGTTTTGCAGCTAAGATGATAGGTATTATTCGGAATCTGATAGAAAGGGATCGACTGATTGAGGCTGTTAGATTTATTTGCAGCTTCAAGTTAACTGAAAAGATCCCCCCAGTACCGCTCTTGAAAGAGTATGTGGAAGATGCAAAGAAGTTCTGTGAAAATATAAAAAAAAATCTCTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

167

Amino Acids

19.42

Weight (kDa)

8.94

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 23 - 164 3.4e-33 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 436
AciI CCGC 2 cut(s) 101, 434
AclWI GGATC 4 cut(s) 105, 118, 375, 415
AcsI RAATTY 2 cut(s) 7, 181
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 5 cut(s) 44, 79, 244, 406, 442
AluBI AGCT 4 cut(s) 85, 265, 329, 402
AluI AGCT 4 cut(s) 85, 265, 329, 402
AlwI GGATC 4 cut(s) 105, 118, 375, 415
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 326, 399
ApoI RAATTY 2 cut(s) 7, 181
AsuHPI GGTGA 2 cut(s) 90, 286
BamHI GGATCC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbvI GCAGC 2 cut(s) 338, 411
BccI CCATC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 309
BfaI CTAG 2 cut(s) 140, 299
BisI GCNGC 2 cut(s) 327, 400
BlsI GCNGC 2 cut(s) 328, 401
BmiI GGNNCC 1 cut(s) 112
BmrI ACTGGG 2 cut(s) 142, 422
BmsI GCATC 2 cut(s) 153, 448
BmuI ACTGGG 2 cut(s) 142, 422
BpuEI CTTGAG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 148, 428
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 168, 296
BseNI ACTGG 2 cut(s) 148, 428
BseXI GCAGC 2 cut(s) 338, 411
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 110, 367, 420
BspACI CCGC 2 cut(s) 101, 434
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 169, 295
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 4 cut(s) 105, 118, 375, 415
BsrBI CCGCTC 1 cut(s) 436
BsrI ACTGG 2 cut(s) 148, 428
BssMI GATC 3 cut(s) 110, 367, 420
BstDEI CTNAG 3 cut(s) 177, 282, 330
BstKTI GATC 3 cut(s) 113, 370, 423
BstMBI GATC 3 cut(s) 110, 367, 420
BstNSI RCATGY 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 338, 411
BstX2I RGATCY 2 cut(s) 110, 420
BstYI RGATCY 2 cut(s) 110, 420
BsuRI GGCC 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 155, 192
Csp6I GTAC 1 cut(s) 431
CviAII CATG 2 cut(s) 104, 317
CviJI RGCY 7 cut(s) 19, 85, 265, 296, 329, 383, 402
CviKI_1 RGCY 7 cut(s) 19, 85, 265, 296, 329, 383, 402
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 177, 282, 330
DpnI GATC 3 cut(s) 112, 369, 422
DpnII GATC 3 cut(s) 110, 367, 420
Eco32I GATATC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 137
FaeI CATG 2 cut(s) 107, 320
FatI CATG 2 cut(s) 103, 316
Fnu4HI GCNGC 2 cut(s) 327, 400
Fsp4HI GCNGC 2 cut(s) 327, 400
FspBI CTAG 2 cut(s) 140, 299
GluI GCNGC 2 cut(s) 327, 400
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 2 cut(s) 107, 320
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 352
HpaI GTTAAC 1 cut(s) 411
HphI GGTGA 2 cut(s) 90, 286
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 5 cut(s) 120, 285, 312, 351, 357
Hpy188III TCNNGA 3 cut(s) 299, 439, 496
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 2 cut(s) 25, 73
HpyCH4V TGCA 4 cut(s) 131, 326, 399, 461
HpyF3I CTNAG 3 cut(s) 177, 282, 330
Hsp92II CATG 2 cut(s) 107, 320
KspAI GTTAAC 1 cut(s) 411
Kzo9I GATC 3 cut(s) 110, 367, 420
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 161, 257, 441
Lsp1109I GCAGC 2 cut(s) 338, 411
LweI GCATC 2 cut(s) 153, 448
MaeI CTAG 2 cut(s) 140, 299
MaeIII GTNAC 1 cut(s) 57
MalI GATC 3 cut(s) 112, 369, 422
MbiI CCGCTC 1 cut(s) 436
MboI GATC 3 cut(s) 110, 367, 420
MboII GAAGA 3 cut(s) 56, 260, 467
MflI RGATCY 2 cut(s) 110, 420
MluCI AATT 4 cut(s) 7, 181, 288, 302
MmeI TCCRAC 2 cut(s) 88, 210
MnlI CCTC 3 cut(s) 21, 161, 373
MseI TTAA 2 cut(s) 410, 502
NdeII GATC 3 cut(s) 110, 367, 420
NlaIII CATG 2 cut(s) 107, 320
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 107
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 328, 401
PsiI TTATAA 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 112
PsuI RGATCY 2 cut(s) 110, 420
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 410, 502
SatI GCNGC 2 cut(s) 327, 400
Sau3AI GATC 3 cut(s) 110, 367, 420
SetI ASST 5 cut(s) 87, 267, 331, 343, 404
SfaNI GCATC 2 cut(s) 153, 448
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 4 cut(s) 7, 181, 288, 302
SsiI CCGC 2 cut(s) 101, 434
SspMI CTAG 2 cut(s) 140, 299
TaqI TCGA 1 cut(s) 370
TasI AATT 4 cut(s) 7, 181, 288, 302
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 410, 502
Tru9I TTAA 2 cut(s) 410, 502
TscAI CASTG 2 cut(s) 155, 192
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 326, 399
Tsp45I GTSAC 1 cut(s) 57
TspRI CASTG 2 cut(s) 155, 192
XapI RAATTY 2 cut(s) 7, 181
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 107
XspI CTAG 2 cut(s) 140, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.