Rh3DG049800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016446
Physical Location & Seq
Forward (+)
3360337 .. 3361833
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG049800.1

Sequence Viewer

Length: 1068 bp
ATGGACTCTATGAGAAAAGCGTGGAAGTACCTCGAGGAGCAGTTTGACACAAACTTGAATGAGTTACAGACCAGACTCCAAGAGCTTCAGATCCACGAGGAGGAAATTAGTAACAAAGAAAAGCGATTGGAAGACAGAGAGTCCGAGTTGGAACGTCTTGATAAGCTGATTGAATATAAGGGAGAGGAATATGATGCAATGGAGGAGGCAATAACAGAGAAGCAGTTACAGCTTGAACAAGTGAAAACCGAGTTGCAATCCATTAGTTTATTGGTTGAAGAAAAAAGCCAAGAGCTTGATAGTAAAGAGAAGCGGGTTTTGGAGGTTGAGGAGTTGCTTAGGAAAAAGGATAAGGAGTGTGCTTTGATGCAAAACCGTATTGAAGAGGGAAGGAATAATTTGATTAGGGTTGAGAAAAGTATTAGGGAAATGGATATCAAAGTGAAGACTTCTATGGAGGATTGGTCTGGTAAGGTTGATTTAAAAGAGAGGCAAATTGAAGGACTGCTCAAGCCAAATGTGGAACAACTTCTTCTTGCTTATAACATGATCAAAGAACACTTCAATGAAGTTGAAAGGAAAGAGAGGGGACTGAAACAACAGGCCAAAGACCTTGAATCAAAAGAGAGAGAAGTTGCTTTGAAAGCTGATGAACTTAAGCTGATTGAAACAAGGGTTAAAAAACGCCTCAATAAGGTTCAGTTGAAAGAAAAGCATTTTGATTCACTGGAAAAGTCATTAAAAGCAGACGAACAGCATTTGGGTTCACTCCTAAAGTCCACAGAAGAGTGCAAAAAGGATTTGGCTTCAATATCCCATCAACTTCAGATGAAAGAAAGGGAGCTTGCACAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTTCTTCTCAAGCGAAAACTAAGCATTTGGAACCTGCCCCTGCTGATAAAAATGCCACTGCTCCTTCATCTACAATTGATCATTCCTGCATCAATATAGATGTTTATCATTGCAATTGGATAGTGAAGTCCAACAAAGAGGAACCAGAATCTTCACCGACTAGAAATGCAGCAAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

41.7

Weight (kDa)

5.52

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AbsI CCTCGAGG 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 928
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 85
AcuI CTGAAG 2 cut(s) 71, 809
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 100, 694
AflII CTTAAG 1 cut(s) 656
AhdI GACNNNNNGTC 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 8 cut(s) 85, 166, 232, 295, 647, 661, 844, 865
AluI AGCT 8 cut(s) 85, 166, 232, 295, 647, 661, 844, 865
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 2 cut(s) 603, 855
ApeKI GCWGC 1 cut(s) 1055
Asp700I GAANNNNTTC 1 cut(s) 528
AsuHPI GGTGA 1 cut(s) 1032
AvaI CYCGRG 1 cut(s) 32
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 138, 452
BccI CCATC 1 cut(s) 825
BclI TGATCA 2 cut(s) 549, 964
BfaI CTAG 1 cut(s) 1047
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 928
BisI GCNGC 1 cut(s) 1056
BlsI GCNGC 1 cut(s) 1057
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 918, 1029
BmsI GCATC 3 cut(s) 184, 357, 984
BpiI GAAGAC 2 cut(s) 138, 452
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 2 cut(s) 494, 879
BsaBI GATNNNNATC 1 cut(s) 990
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 694
Bse1I ACTGG 1 cut(s) 732
Bse3DI GCAATG 2 cut(s) 204, 994
Bse8I GATNNNNATC 1 cut(s) 990
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 2 cut(s) 100, 694
BseMI GCAATG 2 cut(s) 204, 994
BseNI ACTGG 1 cut(s) 732
BseRI GAGGAG 4 cut(s) 50, 113, 218, 344
BshFI GGCC 2 cut(s) 605, 857
BsiHKCI CYCGRG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 100, 694
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 2 cut(s) 605, 857
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 3 cut(s) 90, 549, 964
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 605, 857
BspLI GGNNCC 2 cut(s) 918, 1029
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 1 cut(s) 85
BspTI CTTAAG 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 204, 994
BsrI ACTGG 1 cut(s) 732
BssMI GATC 3 cut(s) 90, 549, 964
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 378, 780
BstAFI CTTAAG 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 846, 855
BstDEI CTNAG 2 cut(s) 338, 906
BstENI CCTNNNNNAGG 1 cut(s) 692
BstKTI GATC 3 cut(s) 93, 552, 967
BstMBI GATC 3 cut(s) 90, 549, 964
BstMWI GCNNNNNNNGC 4 cut(s) 229, 644, 850, 854
BstV2I GAAGAC 2 cut(s) 138, 452
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 2 cut(s) 605, 857
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 2 cut(s) 725, 942
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 2 cut(s) 846, 855
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 547
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 338, 906
DpnI GATC 3 cut(s) 92, 551, 966
DpnII GATC 3 cut(s) 90, 549, 964
DraI TTTAAA 1 cut(s) 483
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 378, 780
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 2 cut(s) 378, 780
Eco32I GATATC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 71, 809
Eco88I CYCGRG 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoRV GATATC 1 cut(s) 436
FaeI CATG 1 cut(s) 550
FaiI YATR 7 cut(s) 11, 177, 192, 455, 543, 548, 983
FaqI GGGAC 1 cut(s) 603
FatI CATG 1 cut(s) 546
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 2 cut(s) 549, 964
Fnu4HI GCNGC 1 cut(s) 1056
Fsp4HI GCNGC 1 cut(s) 1056
FspBI CTAG 1 cut(s) 1047
GluI GCNGC 1 cut(s) 1056
HaeIII GGCC 2 cut(s) 605, 857
Hin1II CATG 1 cut(s) 550
HinfI GANTC 6 cut(s) 5, 75, 140, 617, 722, 1034
HphI GGTGA 1 cut(s) 1032
Hpy166II GTNNAC 2 cut(s) 767, 780
Hpy188I TCNGA 3 cut(s) 90, 145, 828
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 767, 780
HpyAV CCTTC 3 cut(s) 384, 494, 960
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 8 cut(s) 197, 256, 370, 792, 848, 975, 999, 1055
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 644, 850, 854
HpyF3I CTNAG 2 cut(s) 338, 906
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 1 cut(s) 550
Ksp22I TGATCA 2 cut(s) 549, 964
Kzo9I GATC 3 cut(s) 90, 549, 964
LmnI GCTCC 3 cut(s) 37, 841, 952
LpnPI CCDG 9 cut(s) 85, 453, 587, 713, 839, 933, 939, 985, 1044
LweI GCATC 3 cut(s) 184, 357, 984
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 3 cut(s) 63, 110, 225
MalI GATC 3 cut(s) 92, 551, 966
MboI GATC 3 cut(s) 90, 549, 964
MboII GAAGA 8 cut(s) 143, 290, 395, 457, 524, 797, 882, 1029
MfeI CAATTG 2 cut(s) 960, 1000
MflI RGATCY 1 cut(s) 90
MluCI AATT 7 cut(s) 105, 397, 495, 869, 884, 960, 1000
MlyI GAGTC 2 cut(s) 69, 149
MmeI TCCRAC 2 cut(s) 129, 1041
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 5 cut(s) 482, 657, 678, 740, 1066
MslI CAYNNNNRTG 1 cut(s) 564
MspCI CTTAAG 1 cut(s) 656
MunI CAATTG 2 cut(s) 960, 1000
MwoI GCNNNNNNNGC 4 cut(s) 229, 644, 850, 854
NdeII GATC 3 cut(s) 90, 549, 964
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 918, 1029
PaeR7I CTCGAG 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 617, 722, 1034
PkrI GCNGC 1 cut(s) 1057
PleI GAGTC 2 cut(s) 69, 148
PpsI GAGTC 2 cut(s) 69, 148
PsiI TTATAA 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 918, 1029
PspXI VCTCGAGB 1 cut(s) 32
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 5 cut(s) 482, 657, 678, 740, 1066
SatI GCNGC 1 cut(s) 1056
Sau3AI GATC 3 cut(s) 90, 549, 964
SchI GAGTC 2 cut(s) 69, 149
SfaNI GCATC 3 cut(s) 184, 357, 984
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 4 cut(s) 32, 509, 656, 894
SmoI CTYRAG 4 cut(s) 32, 509, 656, 894
Sse9I AATT 7 cut(s) 105, 397, 495, 869, 884, 960, 1000
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 1047
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 33
TasI AATT 7 cut(s) 105, 397, 495, 869, 884, 960, 1000
TfiI GAWTC 3 cut(s) 617, 722, 1034
Tru1I TTAA 5 cut(s) 482, 657, 678, 740, 1066
Tru9I TTAA 5 cut(s) 482, 657, 678, 740, 1066
TscAI CASTG 2 cut(s) 732, 949
TseI GCWGC 1 cut(s) 1055
TspDTI ATGAA 4 cut(s) 582, 666, 845, 942
TspRI CASTG 2 cut(s) 732, 949
Vha464I CTTAAG 1 cut(s) 656
XagI CCTNNNNNAGG 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.