Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8014410.1

Orthogroup ID

OG0016446

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 450

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8014410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 377 bp

atgatcagaattgggaaacaaattgatgctgtgcattttattcatgccttccagcttactgaaagttttcctcctgtgccacttttgaagacgtatttgaaagaactgaggagaaattcacaaggcgacagcaatggagacgcacaggaggatgttaatgcaaaagagctttctggtctgaaggctgtagtagggtgtgttcaagactacaagcttgaagctgagtacccccttgatccactgcagaaaaggcttgttcaactagaaaaatccaaagctgacaggaagcgaagtggtgattctggtaaacgccaacaaccaccaaagaagcaaaaagccactggaagatggcgtggataccgtggtggaccaggtct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

9.81

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0453031
rosa_laevigata	RLG00000025549
rosa_multiflora	Rmu_co8014410.1_g000001 Rmu_sc0005888.1_g000001 Rmu_sc0023319.1_g000003
rosa_roxburghii	Rroxscaffold_6G00430110
rosa_rugosa	Rorug02G0645500 Rorug02G0645600 Rorug02G0645700.1
rosa_samantha	Rh3AG047700 Rh3CG049000 Rh3CG049100 Rh3DG049800 Rh3DG049900
rosa_wichuraiana	Rw3G003730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	5 cut(s)	88, 100, 203, 218, 260
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	55, 169, 214, 221, 278
AluI	AGCT	5 cut(s)	55, 169, 214, 221, 278
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	368
BaeI	ACNNNNGTAYC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	95
BccI	CCATC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	186, 242
BfuI	GTATCC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	98, 213
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	3, 235
BspCNI	CTCAG	2 cut(s)	99, 214
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	3, 235
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	107, 222
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	6, 238
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	3, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	186, 242
BstV2I	GAAGAC	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	239, 339
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	8 cut(s)	55, 169, 185, 214, 221, 253, 278, 338
CviKI_1	RGCY	8 cut(s)	55, 169, 185, 214, 221, 253, 278, 338
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	107, 222
DpnI	GATC	2 cut(s)	5, 237
DpnII	GATC	2 cut(s)	3, 235
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	47
FaiI	YATR	1 cut(s)	45
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	164
FspBI	CTAG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	308, 368
Hpy188I	TCNGA	2 cut(s)	8, 180
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	308, 368
HpyAV	CCTTC	2 cut(s)	58, 175
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	34, 161, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	107, 222
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 235
LpnPI	CCDG	8 cut(s)	65, 87, 131, 159, 268, 288, 327, 357
LweI	GCATC	1 cut(s)	16
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	92
MalI	GATC	2 cut(s)	5, 237
MboI	GATC	2 cut(s)	3, 235
MboII	GAAGA	2 cut(s)	100, 357
MluCI	AATT	3 cut(s)	9, 21, 115
MnlI	CCTC	3 cut(s)	81, 102, 142
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	3, 235
NlaIII	CATG	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PstI	CTGCAG	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	3, 235
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	7 cut(s)	57, 95, 171, 216, 223, 280, 376
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	186, 242
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	3 cut(s)	9, 21, 115
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	95
TasI	AATT	3 cut(s)	9, 21, 115
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	246, 346
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	246, 346
Tth111I	GACNNNGTC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.