RLG00000025549

FRIGIDA-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
46608586 .. 46611321
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025549

Sequence Viewer

Length: 1992 bp
ATGGACTCTATGAGAAAAGCGTGGAAGTACCTAGAGGAGCAGTTTGACACAAACTTGAATGAGCTACAGACCAGACTCCAAGAGCTTCAGATCCGCGAGGAGGAAATTCGTAACAAAGAAAAGCGATTGGAAGACAGAGAGTCCGAGTTGGAACGTCTTGATAAGCTGATTGAATATAAGGGAGAGGAATATGATGCAATGGAGGAGGCAATAACAAAGAAGCAGTTACAGGTTGAACAAGTGAAAACCGAGTTGCAATCCATTAGTTTATTGGTTGAAGAAAAAAGCCAAGAGCTTGATAGTAAAGAGAAGTGGGTTTTGGAGGTTGAGGAGTTGCTTAGGAAAAAGGATAAGGAGTGTGCTTTGATGCAAAACCGTATCGAAGAGGGAAGGAATAATTTGATTAGGGTTGAGAAAAGTATTAGGGAAATGGATATCAAAGTGAAGACTTCTATGGAGGATTGGTCTGGTAAGGTTGATTTAAAAGAGAGGCAAATTGAAGGACTGCTCAAGCCAAATGTGGAACAACTTCTTCTTGCTTATAACATGATCAAAGAATACTTCAATGAAGTTGAAAGGAAAGAGAGGGGACTGAAACAACAGGCCAAAGACCTTGAATCAAAAGAGAGAGAAGTTGCTTTGAAAGCTGATGAACTTAAGCTGACTGAAACAAGGGTTAAAAAACGCCTCAATAAGTTGAAAGAAAAGCATTTTGATTCACTGGAAAAGTCATTAAAAGCAGACAAACAGCATTTGGATTCACTCCTAAAGTCCACAGAAGAGTGCAAAGAGGATTTGGCTTCAATATCCCATCAACTTCAGATGAAAGAAAGGAAGCTTGCACCGCAGGCCAAAGAGCTTGAATTGAAGCAGAAGAAATTTTCTTCTCAAGCGAAAACTAAGCATTTGGAACCTGCCCCTGCTGATAAAAATGCCACTGCTCCTTCATCTACAATTGATCATTCCTGCATCAATATAGATGTGACGTCCAACAAAGAGGAACCAGAATCTTCACCGACTAGAAATGCAGCAAATCTTCAACCAAATACCACCAGGGATGACAGGAATGTGCCAGGGTTGCTAAATGAGAATTTTAGTTGTAATCATTCAGTACAGAGTGACGTGTCTGCTTATCTTCGGTCAGTACCAGACCCAGCTAAAGTTGTGTTGAACAGCATGCGAAATTCTATTAGGCCGTACTTGAGGAAGGGATATTTTGAAGAAAGTGTAATGTCACGAAACATTTCCTTATTGAAGGAGCTAATGATTGTTTCACCGCATGTTGGATCCCATCTGAAAGAAAATGCAAGATATCTAGCAACCCAGTGGAAAATAAAGATGCGAGGCAATACTGAGAATTCAGTGGAGAGTTTGGCATATTTTCTGTTTATAACTATGTATGAGTTGGATTTTATGTTGAATGGAGATGAGATTGTAAAGCTTCTTCTGGTGATTTCTCTGACAATTACGGCTCTAGAATTATGTCAGACACATGGTTTTGCAGCTAAGATGATGGGCAAGTTTCTTGAAAACTATCCTCCTGTGTTCCATGTTGACCATCAATTATTTATTTCTTGTATTATTCGGAATCTGACAGAAAGGGATCGACTGATTGAGGCTGTTAGATTTATTTGCAGCTTCAAGTTAACTGAAAAGATCCCCCCAGTACCACTCTTGAAGGAGTATGTGGAAGATGCAAAGAAGTTCTGTGAAATATTTTGTGAAAAAAAATATCTCTTGGCTGAGTTTGTAGACAACAAAATAGGTGGTTTAAAAGCTGTGCAGCAATGCATCAAAGATTACAATCTTGAGTGCGAATACCCAGCTGCTGACATTCAAATGCAAGTAGTTCAGTTGGAAAGAATGAAGGAGAAATGGAGAAGTCCGGCACCATATCTTGGCTCCAATGCCAAACAACAAGGGCAGAGAAAAAGAAAGAGACCTAATTCTAGCAGTTCTACCCTTGAGTCTCAACCCCAGCAGCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

664

Amino Acids

77.24

Weight (kDa)

7.15

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 361 - 505 2.1e-17 Frigida-like protein
Frigida PF07899 525 - 626 2.3e-21 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 543, 1391
AatII GACGTC 1 cut(s) 989
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 1888
AccB7I CCANNNNNTGG 1 cut(s) 1898
AccI GTMKAC 1 cut(s) 1752
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 94, 845, 1277
AclWI GGATC 5 cut(s) 85, 1281, 1294, 1611, 1651
AcsI RAATTY 5 cut(s) 105, 878, 1090, 1183, 1357
AcuI CTGAAG 2 cut(s) 71, 803
AcyI GRCGYC 1 cut(s) 986
AfaI GTAC 5 cut(s) 29, 1113, 1146, 1199, 1668
AfiI CCNNNNNNNGG 3 cut(s) 100, 1283, 1898
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 1122
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 1123
AjnI CCWGG 2 cut(s) 1052, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
Alw26I GTCTC 2 cut(s) 1933, 1974
AlwI GGATC 5 cut(s) 85, 1281, 1294, 1611, 1651
AlwNI CAGNNNCTG 1 cut(s) 1829
AoxI GGCC 3 cut(s) 603, 849, 1193
ApeKI GCWGC 6 cut(s) 1028, 1502, 1635, 1783, 1826, 1981
ApoI RAATTY 5 cut(s) 105, 878, 1090, 1183, 1357
Asp700I GAANNNNTTC 2 cut(s) 528, 1243
AsuHPI GGTGA 3 cut(s) 1005, 1266, 1462
BamHI GGATCC 1 cut(s) 1286
BanI GGYRCC 1 cut(s) 1888
BarI GAAGNNNNNNTAC 2 cut(s) 1428, 1460
BbsI GAAGAC 2 cut(s) 138, 452
BbvI GCAGC 5 cut(s) 1040, 1514, 1647, 1795, 1813
BccI CCATC 4 cut(s) 819, 1299, 1507, 1566
BceAI ACGGC 2 cut(s) 1180, 1485
BciT130I CCWGG 2 cut(s) 1054, 1074
BclI TGATCA 2 cut(s) 549, 958
BcoDI GTCTC 2 cut(s) 1933, 1974
BfaI CTAG 5 cut(s) 32, 1020, 1316, 1475, 1950
BfmI CTRYAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 6 cut(s) 1029, 1503, 1636, 1784, 1827, 1982
BlsI GCNGC 6 cut(s) 1030, 1504, 1637, 1785, 1828, 1983
Bme1390I CCNGG 2 cut(s) 1054, 1074
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 1123
BmiI GGNNCC 5 cut(s) 912, 1002, 1288, 1890, 1903
BmrFI CCNGG 2 cut(s) 1054, 1074
BmrI ACTGGG 2 cut(s) 1318, 1658
BmsI GCATC 6 cut(s) 184, 357, 978, 1329, 1684, 1800
BmuI ACTGGG 2 cut(s) 1318, 1658
BpiI GAAGAC 2 cut(s) 138, 452
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 5 cut(s) 494, 873, 1222, 1829, 1985
BsaBI GATNNNNATC 1 cut(s) 1803
BsaHI GRCGYC 1 cut(s) 986
BsaI GGTCTC 1 cut(s) 1933
BsaJI CCNNGG 2 cut(s) 1053, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 1283, 1898
Bse1I ACTGG 3 cut(s) 726, 1324, 1664
Bse3DI GCAATG 2 cut(s) 204, 1793
Bse8I GATNNNNATC 1 cut(s) 1803
BseBI CCWGG 2 cut(s) 1054, 1074
BseDI CCNNGG 2 cut(s) 1053, 1073
BseGI GGATG 1 cut(s) 1063
BseJI GATNNNNATC 1 cut(s) 1803
BseLI CCNNNNNNNGG 3 cut(s) 100, 1283, 1898
BseMI GCAATG 2 cut(s) 204, 1793
BseMII CTCAG 2 cut(s) 1344, 1734
BseNI ACTGG 3 cut(s) 726, 1324, 1664
BseRI GAGGAG 4 cut(s) 50, 113, 218, 344
BseXI GCAGC 5 cut(s) 1040, 1514, 1647, 1795, 1813
BseYI CCCAGC 3 cut(s) 1153, 1822, 1977
BsgI GTGCAG 1 cut(s) 1802
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 605, 851, 1195
BshNI GGYRCC 1 cut(s) 1888
BsiSI CCGG 1 cut(s) 1886
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 3 cut(s) 100, 1283, 1898
BsmAI GTCTC 2 cut(s) 1933, 1974
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 3 cut(s) 605, 851, 1195
Bso31I GGTCTC 1 cut(s) 1933
Bsp143I GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
BspACI CCGC 3 cut(s) 94, 845, 1277
BspANI GGCC 3 cut(s) 605, 851, 1195
BspCNI CTCAG 2 cut(s) 1345, 1735
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 5 cut(s) 912, 1002, 1288, 1890, 1903
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 5 cut(s) 85, 1281, 1294, 1611, 1651
BspT107I GGYRCC 1 cut(s) 1888
BspTI CTTAAG 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 1933
BsrDI GCAATG 2 cut(s) 204, 1793
BsrI ACTGG 3 cut(s) 726, 1324, 1664
BssECI CCNNGG 2 cut(s) 1053, 1073
BssMI GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
BssNI GRCGYC 1 cut(s) 986
Bst2UI CCWGG 2 cut(s) 1054, 1074
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 378, 774
BstACI GRCGYC 1 cut(s) 986
BstAFI CTTAAG 1 cut(s) 656
BstC8I GCNNGC 3 cut(s) 840, 849, 1178
BstDEI CTNAG 5 cut(s) 338, 900, 1353, 1506, 1743
BstF5I GGATG 1 cut(s) 1063
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 6 cut(s) 93, 552, 961, 1289, 1606, 1659
BstMAI GTCTC 2 cut(s) 1933, 1974
BstMBI GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
BstMWI GCNNNNNNNGC 4 cut(s) 644, 844, 848, 1078
BstNI CCWGG 2 cut(s) 1054, 1074
BstNSI RCATGY 2 cut(s) 1180, 1283
BstSCI CCNGG 2 cut(s) 1052, 1072
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 5 cut(s) 1040, 1514, 1647, 1795, 1813
BstV2I GAAGAC 2 cut(s) 138, 452
BstX2I RGATCY 3 cut(s) 90, 1286, 1656
BstYI RGATCY 3 cut(s) 90, 1286, 1656
BsuRI GGCC 3 cut(s) 605, 851, 1195
BtrI CACGTC 1 cut(s) 1123
BtsCI GGATG 1 cut(s) 1063
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 4 cut(s) 719, 936, 1331, 1368
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 3 cut(s) 840, 849, 1178
CaiI CAGNNNCTG 1 cut(s) 1829
Csp6I GTAC 5 cut(s) 28, 1112, 1145, 1198, 1667
CspCI CAANNNNNGTGG 2 cut(s) 1747, 1782
CviAII CATG 5 cut(s) 547, 1177, 1280, 1493, 1550
CviQI GTAC 5 cut(s) 28, 1112, 1145, 1198, 1667
DdeI CTNAG 5 cut(s) 338, 900, 1353, 1506, 1743
DpnI GATC 6 cut(s) 92, 551, 960, 1288, 1605, 1658
DpnII GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
DraI TTTAAA 2 cut(s) 483, 1773
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 378, 774
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 2 cut(s) 378, 774
Eco31I GGTCTC 1 cut(s) 1933
Eco32I GATATC 2 cut(s) 436, 1313
Eco57I CTGAAG 2 cut(s) 71, 803
EcoRI GAATTC 1 cut(s) 1357
EcoRII CCWGG 2 cut(s) 1052, 1072
EcoRV GATATC 2 cut(s) 436, 1313
EcoT22I ATGCAT 1 cut(s) 1793
FaeI CATG 5 cut(s) 550, 1180, 1283, 1496, 1553
FaqI GGGAC 1 cut(s) 603
FatI CATG 5 cut(s) 546, 1176, 1279, 1492, 1549
FbaI TGATCA 2 cut(s) 549, 958
FblI GTMKAC 1 cut(s) 1752
Fnu4HI GCNGC 6 cut(s) 1029, 1503, 1636, 1784, 1827, 1982
FokI GGATG 1 cut(s) 1070
Fsp4HI GCNGC 6 cut(s) 1029, 1503, 1636, 1784, 1827, 1982
FspBI CTAG 5 cut(s) 32, 1020, 1316, 1475, 1950
GluI GCNGC 6 cut(s) 1029, 1503, 1636, 1784, 1827, 1982
GsaI CCCAGC 3 cut(s) 1157, 1826, 1981
HaeIII GGCC 3 cut(s) 605, 851, 1195
HapII CCGG 1 cut(s) 1886
Hin1I GRCGYC 1 cut(s) 986
Hin1II CATG 5 cut(s) 550, 1180, 1283, 1496, 1553
HincII GTYRAC 2 cut(s) 1555, 1647
HindII GTYRAC 2 cut(s) 1555, 1647
HindIII AAGCTT 2 cut(s) 836, 1439
HinfI GANTC 9 cut(s) 5, 75, 140, 617, 716, 758, 1007, 1588, 1967
HpaI GTTAAC 1 cut(s) 1647
HpaII CCGG 1 cut(s) 1886
HphI GGTGA 3 cut(s) 1005, 1266, 1462
Hpy166II GTNNAC 4 cut(s) 774, 1555, 1647, 1753
Hpy188I TCNGA 8 cut(s) 90, 145, 822, 1296, 1461, 1488, 1587, 1593
Hpy188III TCNNGA 6 cut(s) 158, 1236, 1475, 1526, 1675, 1808
Hpy8I GTNNAC 4 cut(s) 774, 1555, 1647, 1753
HpyAV CCTTC 7 cut(s) 384, 494, 954, 1201, 1249, 1672, 1861
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 3 cut(s) 154, 986, 1122
HpyF10VI GCNNNNNNNGC 4 cut(s) 644, 844, 848, 1078
HpyF3I CTNAG 5 cut(s) 338, 900, 1353, 1506, 1743
HpySE526I ACGT 3 cut(s) 154, 986, 1122
Hsp92I GRCGYC 1 cut(s) 986
Hsp92II CATG 5 cut(s) 550, 1180, 1283, 1496, 1553
Ksp22I TGATCA 2 cut(s) 549, 958
KspAI GTTAAC 1 cut(s) 1647
Kzo9I GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
LmnI GCTCC 4 cut(s) 37, 946, 1258, 1907
Lsp1109I GCAGC 5 cut(s) 1040, 1514, 1647, 1795, 1813
LweI GCATC 6 cut(s) 184, 357, 978, 1329, 1684, 1800
MaeI CTAG 5 cut(s) 32, 1020, 1316, 1475, 1950
MaeII ACGT 3 cut(s) 154, 986, 1122
MaeIII GTNAC 5 cut(s) 110, 225, 982, 1118, 1233
MalI GATC 6 cut(s) 92, 551, 960, 1288, 1605, 1658
MboI GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 3 cut(s) 90, 1286, 1656
MlyI GAGTC 3 cut(s) 69, 149, 1976
MmeI TCCRAC 5 cut(s) 129, 1014, 1264, 1386, 1836
Mph1103I ATGCAT 1 cut(s) 1793
MroXI GAANNNNTTC 2 cut(s) 528, 1243
MseI TTAA 6 cut(s) 482, 657, 678, 734, 1646, 1772
MslI CAYNNNNRTG 1 cut(s) 1838
MspA1I CMGCKG 1 cut(s) 1826
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 1886
MspR9I CCNGG 2 cut(s) 1054, 1074
MunI CAATTG 1 cut(s) 954
MvaI CCWGG 2 cut(s) 1054, 1074
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 644, 844, 848, 1078
NdeII GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
NlaIII CATG 5 cut(s) 550, 1180, 1283, 1496, 1553
NlaIV GGNNCC 5 cut(s) 912, 1002, 1288, 1890, 1903
NmuCI GTSAC 3 cut(s) 982, 1118, 1233
NsiI ATGCAT 1 cut(s) 1793
NspI RCATGY 2 cut(s) 1180, 1283
PaeI GCATGC 1 cut(s) 1180
PdmI GAANNNNTTC 2 cut(s) 528, 1243
PfeI GAWTC 5 cut(s) 617, 716, 758, 1007, 1588
PflMI CCANNNNNTGG 1 cut(s) 1898
PkrI GCNGC 6 cut(s) 1030, 1504, 1637, 1785, 1828, 1983
PleI GAGTC 3 cut(s) 69, 148, 1975
PpsI GAGTC 3 cut(s) 69, 148, 1975
PsiI TTATAA 2 cut(s) 543, 1391
Psp6I CCWGG 2 cut(s) 1052, 1072
PspFI CCCAGC 3 cut(s) 1153, 1822, 1977
PspGI CCWGG 2 cut(s) 1052, 1072
PspN4I GGNNCC 5 cut(s) 912, 1002, 1288, 1890, 1903
PstNI CAGNNNCTG 1 cut(s) 1829
PsuI RGATCY 3 cut(s) 90, 1286, 1656
PvuII CAGCTG 1 cut(s) 1826
RsaI GTAC 5 cut(s) 29, 1113, 1146, 1199, 1668
RsaNI GTAC 5 cut(s) 28, 1112, 1145, 1198, 1667
RseI CAYNNNNRTG 1 cut(s) 1838
SaqAI TTAA 6 cut(s) 482, 657, 678, 734, 1646, 1772
SatI GCNGC 6 cut(s) 1029, 1503, 1636, 1784, 1827, 1982
Sau3AI GATC 6 cut(s) 90, 549, 958, 1286, 1603, 1656
SchI GAGTC 3 cut(s) 69, 149, 1976
ScrFI CCNGG 2 cut(s) 1054, 1074
SfaNI GCATC 6 cut(s) 184, 357, 978, 1329, 1684, 1800
SfcI CTRYAG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 1838
SmlI CTYRAG 6 cut(s) 509, 656, 888, 1201, 1808, 1964
SmoI CTYRAG 6 cut(s) 509, 656, 888, 1201, 1808, 1964
SphI GCATGC 1 cut(s) 1180
SsiI CCGC 3 cut(s) 94, 845, 1277
SspI AATATT 1 cut(s) 1716
SspMI CTAG 5 cut(s) 32, 1020, 1316, 1475, 1950
StyD4I CCNGG 2 cut(s) 1052, 1072
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 3 cut(s) 157, 989, 1125
TaqI TCGA 2 cut(s) 381, 1606
TaqII GACCGA 1 cut(s) 1128
TatI WGTACW 1 cut(s) 1111
TfiI GAWTC 5 cut(s) 617, 716, 758, 1007, 1588
Tru1I TTAA 6 cut(s) 482, 657, 678, 734, 1646, 1772
Tru9I TTAA 6 cut(s) 482, 657, 678, 734, 1646, 1772
TscAI CASTG 4 cut(s) 726, 943, 1331, 1368
TseFI GTSAC 3 cut(s) 982, 1118, 1233
TseI GCWGC 6 cut(s) 1028, 1502, 1635, 1783, 1826, 1981
Tsp45I GTSAC 3 cut(s) 982, 1118, 1233
TspDTI ATGAA 5 cut(s) 582, 666, 839, 936, 1880
TspRI CASTG 4 cut(s) 726, 943, 1331, 1368
Van91I CCANNNNNTGG 1 cut(s) 1898
Vha464I CTTAAG 1 cut(s) 656
XapI RAATTY 5 cut(s) 105, 878, 1090, 1183, 1357
XbaI TCTAGA 1 cut(s) 1474
XceI RCATGY 2 cut(s) 1180, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 1752
XmnI GAANNNNTTC 2 cut(s) 528, 1243
XspI CTAG 5 cut(s) 32, 1020, 1316, 1475, 1950
ZraI GACGTC 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.