Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016446

Physical Location & Seq

Genomic Coordinates Forward (+)

3360337 .. 3361431

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGACTCTATGAGAAAAGCGTGGAAGTACCTCGAGGAGCAGTTTGACACAAACTTGAATGAGTTACAGACCAGACTCCAAGAGCTTCAGATCCACGAGGAGGAAATTAGTAACAAAGAAAAGCGATTGGAAGACAGAGAGTCCGAGTTGGAACGTCTTGATAAGCTGATTGAATATAAGGGAGAGGAATATGATGCAATGGAGGAGGCAATAACAGAGAAGCAGTTACAGCTTGAACAAGTGAAAACCGAGTTGCAATCCATTAGTTTATTGGTTGAAGAAAAAAGCCAAGAGCTTGATAGTAAAGAGAAGCGGGTTTTGGAGGTTGAGGAGTTGCTTAGGAAAAAGGATAAGGAGTGTGCTTTGATGCAAAACCGTATTGAAGAGGGAAGGAATAATTTGATTAGGGTTGAGAAAAGTATTAGGGAAATGGATATCAAAGTGAAGACTTCTATGGAGGATTGGTCTGGTAAGGTTGATTTAAAAGAGAGGCAAATTGAAGGACTGCTCAAGCCAAATGTGGAACAACTTCTTCTTGCTTATAACATGATCAAAGAACACTTCAATGAAGTTGAAAGGAAAGAGAGGGGACTGAAACAACAGGCCAAAGACCTTGAATCAAAAGAGAGAGAAGTTGCTTTGAAAGCTGATGAACTTAAGCTGATTGAAACAAGGGTTAAAAAACGCCTCAATAAGGTTCAGTTGAAAGAAAAGCATTTTGATTCACTGGAAAAGTCATTAAAAGCAGACGAACAGCATTTGGGTTCACTCCTAAAGTCCACAGAAGAGTGCAAAAAGGATTTGGCTTCAATATCCCATCAACTTCAGATGAAAGAAAGGGAGCTTGCACAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTTCTTCTCAAGCGAAAACTAAGCATTTGGAACCTGCCCCTGCTGATAAAAATGCCACTGCTCCTTCATCTACAATTGATCATTCCTGCATCAATATAGATGGTACAACCTCGCAATCCTTGATTAATGCAAGTCATAAGAAGTTTGGTTTTTTTCCTACCCATGAGAATGTTGTTCACGGCTATCAGCATTTCTTGATGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

42.77

Weight (kDa)

5.74

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0453031
rosa_laevigata	RLG00000025549
rosa_multiflora	Rmu_co8014410.1_g000001 Rmu_sc0005888.1_g000001 Rmu_sc0023319.1_g000003
rosa_roxburghii	Rroxscaffold_6G00430110
rosa_rugosa	Rorug02G0645500 Rorug02G0645600 Rorug02G0645700.1
rosa_samantha	Rh3AG047700 Rh3CG049000 Rh3CG049100 Rh3DG049800 Rh3DG049900
rosa_wichuraiana	Rw3G003730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AbsI	CCTCGAGG	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	928
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	71, 809
AfaI	GTAC	2 cut(s)	29, 991
AfiI	CCNNNNNNNGG	2 cut(s)	100, 694
AflII	CTTAAG	1 cut(s)	656
AhdI	GACNNNNNGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	8 cut(s)	85, 166, 232, 295, 647, 661, 844, 865
AluI	AGCT	8 cut(s)	85, 166, 232, 295, 647, 661, 844, 865
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	603, 855
AseI	ATTAAT	1 cut(s)	1011
Asp700I	GAANNNNTTC	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	32
BauI	CACGAG	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	138, 452
BccI	CCATC	2 cut(s)	825, 980
BceAI	ACGGC	1 cut(s)	1081
BclI	TGATCA	2 cut(s)	549, 964
BfaI	CTAG	1 cut(s)	1093
BfrI	CTTAAG	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	928
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	918
BmsI	GCATC	3 cut(s)	184, 357, 984
BpiI	GAAGAC	2 cut(s)	138, 452
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	494, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 694
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	100, 694
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	4 cut(s)	50, 113, 218, 344
BshFI	GGCC	2 cut(s)	605, 857
BsiHKCI	CYCGRG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	100, 694
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	605, 857
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	90, 549, 964
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	605, 857
BspLI	GGNNCC	1 cut(s)	918
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	732
BssMI	GATC	3 cut(s)	90, 549, 964
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	378, 780
BstAFI	CTTAAG	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	846, 855
BstDEI	CTNAG	2 cut(s)	338, 906
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstKTI	GATC	3 cut(s)	93, 552, 967
BstMBI	GATC	3 cut(s)	90, 549, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 644, 850, 854
BstV2I	GAAGAC	2 cut(s)	138, 452
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	605, 857
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	2 cut(s)	725, 942
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	2 cut(s)	846, 855
Csp6I	GTAC	2 cut(s)	28, 990
CviAII	CATG	2 cut(s)	547, 1049
CviQI	GTAC	2 cut(s)	28, 990
DdeI	CTNAG	2 cut(s)	338, 906
DpnI	GATC	3 cut(s)	92, 551, 966
DpnII	GATC	3 cut(s)	90, 549, 964
DraI	TTTAAA	1 cut(s)	483
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	378, 780
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	2 cut(s)	378, 780
Eco32I	GATATC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	71, 809
Eco88I	CYCGRG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoRV	GATATC	1 cut(s)	436
FaeI	CATG	2 cut(s)	550, 1052
FaiI	YATR	9 cut(s)	11, 177, 192, 455, 543, 548, 983, 1023, 1050
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	2 cut(s)	546, 1048
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	549, 964
FspBI	CTAG	1 cut(s)	1093
HaeIII	GGCC	2 cut(s)	605, 857
Hin1II	CATG	2 cut(s)	550, 1052
HinfI	GANTC	5 cut(s)	5, 75, 140, 617, 722
Hpy166II	GTNNAC	3 cut(s)	767, 780, 1063
Hpy188I	TCNGA	3 cut(s)	90, 145, 828
Hpy188III	TCNNGA	2 cut(s)	158, 1081
Hpy8I	GTNNAC	3 cut(s)	767, 780, 1063
HpyAV	CCTTC	3 cut(s)	384, 494, 960
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	7 cut(s)	197, 256, 370, 792, 848, 975, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 644, 850, 854
HpyF3I	CTNAG	2 cut(s)	338, 906
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	550, 1052
Ksp22I	TGATCA	2 cut(s)	549, 964
Kzo9I	GATC	3 cut(s)	90, 549, 964
LmnI	GCTCC	3 cut(s)	37, 841, 952
LpnPI	CCDG	8 cut(s)	85, 453, 587, 713, 839, 933, 939, 985
LweI	GCATC	3 cut(s)	184, 357, 984
MaeI	CTAG	1 cut(s)	1093
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	63, 110, 225
MalI	GATC	3 cut(s)	92, 551, 966
MboI	GATC	3 cut(s)	90, 549, 964
MboII	GAAGA	7 cut(s)	143, 290, 395, 457, 524, 797, 882
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	6 cut(s)	105, 397, 495, 869, 884, 960
MlyI	GAGTC	2 cut(s)	69, 149
MmeI	TCCRAC	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	5 cut(s)	482, 657, 678, 740, 1011
MslI	CAYNNNNRTG	2 cut(s)	564, 1053
MspCI	CTTAAG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	960
MwoI	GCNNNNNNNGC	4 cut(s)	229, 644, 850, 854
NdeII	GATC	3 cut(s)	90, 549, 964
NlaIII	CATG	2 cut(s)	550, 1052
NlaIV	GGNNCC	1 cut(s)	918
PaeR7I	CTCGAG	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	617, 722
PleI	GAGTC	2 cut(s)	69, 148
PpsI	GAGTC	2 cut(s)	69, 148
PshBI	ATTAAT	1 cut(s)	1011
PsiI	TTATAA	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	918
PspXI	VCTCGAGB	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	2 cut(s)	29, 991
RsaNI	GTAC	2 cut(s)	28, 990
RseI	CAYNNNNRTG	2 cut(s)	564, 1053
SaqAI	TTAA	5 cut(s)	482, 657, 678, 740, 1011
Sau3AI	GATC	3 cut(s)	90, 549, 964
SchI	GAGTC	2 cut(s)	69, 149
SfaNI	GCATC	3 cut(s)	184, 357, 984
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmiMI	CAYNNNNRTG	2 cut(s)	564, 1053
SmlI	CTYRAG	4 cut(s)	32, 509, 656, 894
SmoI	CTYRAG	4 cut(s)	32, 509, 656, 894
Sse9I	AATT	6 cut(s)	105, 397, 495, 869, 884, 960
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	1093
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	33
TasI	AATT	6 cut(s)	105, 397, 495, 869, 884, 960
TfiI	GAWTC	2 cut(s)	617, 722
Tru1I	TTAA	5 cut(s)	482, 657, 678, 740, 1011
Tru9I	TTAA	5 cut(s)	482, 657, 678, 740, 1011
TscAI	CASTG	2 cut(s)	732, 949
TspDTI	ATGAA	4 cut(s)	582, 666, 845, 942
TspRI	CASTG	2 cut(s)	732, 949
Vha464I	CTTAAG	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	1011
XagI	CCTNNNNNAGG	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.