RchiOBHm_Chr3g0454391

Baculoviral IAP repeat containing 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016449
Physical Location & Seq
Reverse (-)
4524418 .. 4529361
4944 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42141

Sequence Viewer

Length: 984 bp
ATGTGGTTCAAAAGCTGTGCTTTAAAACACAACATCGTGTCTAAAAGAAAGTGTTTTAGAGGGGCATCATTGACTCCAAAGGAATATGCAGATACTTCAAAGGGCCTTCAATGCGACAAAACTGCCAATAACTACTGTCCTGAGTGTGGGTTCCGGCTGTTGGAGTGTGCAATAAGGAACCAGCACACCGATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCGAGATAATGACATTGGAAGAGGCATTGAGACAATGGACGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTTTGTACACTTCAAGCTCTGTGGGGAGATTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCAGGGCAAGGAACCAGATGTGTATTTCGCATGGGGCAAGGCTACTTTCAAGCAGGAAGGATCTGTGTTACGGATCAAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTCTACTGGTTTTGCAACCAGTTAAATGAGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCTCTCGGATATAGAGATGGCACTCAAAGCTTCACTGGACCATTTTGGACAGCCATCTTCACAGCCTTCAATGGCTGTTGGTTTGGGTTCTGTGGTGGATGATGGGTTTGATCTCTCTGATATAGAGATGGCACTCAAAGCTTCATTGGACCATTTTGGACAGCCATCTTTACAGCCTTCTGCACCACCTTTGCCCGAAGATGCCTGCACCATCTGTTTTGATCATAGAGTTGACACTGCCTTTGTTCCTTGTGGTCATCTTATCTGCTCACCATGTGCAGAAAAGATTCAGCATCAGAACTTGCTGTGTCCCTTCTGCCATGAGGTGGTGGAGAACTTTGCAATTCCTAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000187 GO:0000209 GO:0001932 GO:0001934 GO:0002020 GO:0002225 GO:0002682 GO:0002684 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002759 GO:0002760 GO:0002784 GO:0002786 GO:0002803 GO:0002805 GO:0002807 GO:0002808 GO:0002813 GO:0002831 GO:0002833 GO:0002920 GO:0002922 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005815 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006963 GO:0006964 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0007257 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010466 GO:0010468 GO:0010562 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0012505 GO:0015630 GO:0016310 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022416 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030163 GO:0030234 GO:0030414 GO:0031098 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0031625 GO:0032101 GO:0032103 GO:0032147 GO:0032268 GO:0032269 GO:0032270 GO:0032386 GO:0032388 GO:0032446 GO:0032501 GO:0032502 GO:0032872 GO:0032874 GO:0032879 GO:0032880 GO:0033157 GO:0033158 GO:0033160 GO:0033554 GO:0033674 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0042306 GO:0042307 GO:0042325 GO:0042327 GO:0042742 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043086 GO:0043154 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043281 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045861 GO:0045937 GO:0046328 GO:0046330 GO:0046822 GO:0046824 GO:0046872 GO:0046914 GO:0048471 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050829 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051338 GO:0051346 GO:0051347 GO:0051403 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0060548 GO:0061057 GO:0061134 GO:0061135 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070201 GO:0070228 GO:0070247 GO:0070302 GO:0070304 GO:0070534 GO:0070613 GO:0070647 GO:0070936 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0089720 GO:0090087 GO:0090316 GO:0097340 GO:0097341 GO:0098542 GO:0098772 GO:0140096 GO:1900180 GO:1900182 GO:1900424 GO:1900426 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951 GO:1990001 GO:2000106 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
ko01524 ko04064 ko04120 ko04210 ko04214 ko04215 ko04217 ko04510 ko04621 ko04624 ko04668 ko05145 ko05166 ko05200 ko05222 map01524 map04064 map04120 map04210 map04214 map04215 map04217 map04510 map04621 map04624 map04668 map05145 map05166 map05200 map05222
Pfam Domains
Protein Families
BIR zf-C3HC4_3

Protein Analysis

327

Amino Acids

36.25

Weight (kDa)

5.25

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 275 - 321 6.5e-12 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 952
AclI AACGTT 1 cut(s) 345
AclWI GGATC 2 cut(s) 484, 497
AcsI RAATTY 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 5 cut(s) 146, 160, 424, 542, 952
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 8 cut(s) 10, 99, 110, 302, 324, 343, 466, 696
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 6 cut(s) 15, 221, 283, 327, 656, 767
AluI AGCT 6 cut(s) 15, 221, 283, 327, 656, 767
Alw26I GTCTC 2 cut(s) 254, 500
AlwI GGATC 2 cut(s) 484, 497
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
Asp700I GAANNNNTTC 2 cut(s) 228, 912
AspA2I CCTAGG 1 cut(s) 974
AspS9I GGNCC 3 cut(s) 103, 664, 775
AsuHPI GGTGA 1 cut(s) 888
AvaII GGWCC 2 cut(s) 664, 775
AvrII CCTAGG 1 cut(s) 974
BccI CCATC 8 cut(s) 491, 611, 637, 688, 722, 748, 799, 845
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 2 cut(s) 254, 500
BfaI CTAG 1 cut(s) 975
BfrI CTTAAG 1 cut(s) 209
BlnI CCTAGG 1 cut(s) 974
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 664, 775
BmgT120I GGNCC 3 cut(s) 103, 664, 775
BmiI GGNNCC 4 cut(s) 152, 179, 429, 522
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 74, 817, 928
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 418, 974
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 160, 424, 542, 952
Bse1I ACTGG 3 cut(s) 569, 577, 666
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 418, 974
BseGI GGATG 2 cut(s) 619, 730
BseLI CCNNNNNNNGG 5 cut(s) 146, 160, 424, 542, 952
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 3 cut(s) 569, 577, 666
BsgI GTGCAG 3 cut(s) 792, 817, 924
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 5 cut(s) 146, 160, 424, 542, 952
BsmAI GTCTC 2 cut(s) 254, 500
BsmFI GGGAC 1 cut(s) 921
BsnI GGCC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 5 cut(s) 476, 489, 625, 736, 847
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 152, 179, 429, 522
BspPI GGATC 2 cut(s) 484, 497
BspTI CTTAAG 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 3 cut(s) 569, 577, 666
BssECI CCNNGG 2 cut(s) 418, 974
BssMI GATC 5 cut(s) 476, 489, 625, 736, 847
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 974
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 270
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 2 cut(s) 141, 274
BstF5I GGATG 2 cut(s) 619, 730
BstKTI GATC 5 cut(s) 479, 492, 628, 739, 850
BstMAI GTCTC 2 cut(s) 254, 500
BstMBI GATC 5 cut(s) 476, 489, 625, 736, 847
BstMWI GCNNNNNNNGC 3 cut(s) 111, 653, 764
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 619, 730
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 659, 861
Cac8I GCNNGC 1 cut(s) 832
Cfr13I GGNCC 3 cut(s) 103, 664, 775
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 4 cut(s) 312, 347, 355, 390
CviAII CATG 3 cut(s) 447, 900, 947
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 141, 274
DpnI GATC 5 cut(s) 478, 491, 627, 738, 849
DpnII GATC 5 cut(s) 476, 489, 625, 736, 847
DraI TTTAAA 1 cut(s) 24
DraIII CACNNNGTG 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 974
Eco47I GGWCC 2 cut(s) 664, 775
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 974
ErhI CCWWGG 1 cut(s) 974
FaeI CATG 3 cut(s) 450, 903, 950
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 1 cut(s) 921
FatI CATG 3 cut(s) 446, 899, 946
FbaI TGATCA 1 cut(s) 847
FokI GGATG 2 cut(s) 626, 737
FspBI CTAG 1 cut(s) 975
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 3 cut(s) 450, 903, 950
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 3 cut(s) 281, 654, 765
HinfI GANTC 4 cut(s) 73, 339, 403, 913
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 888
Hpy166II GTNNAC 2 cut(s) 318, 859
Hpy188I TCNGA 3 cut(s) 634, 745, 924
Hpy188III TCNNGA 2 cut(s) 140, 233
Hpy8I GTNNAC 2 cut(s) 318, 859
HpyAV CCTTC 6 cut(s) 116, 296, 467, 702, 813, 949
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 7 cut(s) 89, 170, 573, 809, 834, 905, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 653, 764
HpyF3I CTNAG 2 cut(s) 141, 274
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 3 cut(s) 450, 903, 950
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 476, 489, 625, 736, 847
LmnI GCTCC 1 cut(s) 218
LweI GCATC 3 cut(s) 74, 817, 928
MaeI CTAG 1 cut(s) 975
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 483
MalI GATC 5 cut(s) 478, 491, 627, 738, 849
MboI GATC 5 cut(s) 476, 489, 625, 736, 847
MboII GAAGA 3 cut(s) 261, 675, 836
MflI RGATCY 1 cut(s) 476
MluCI AATT 2 cut(s) 225, 969
MlyI GAGTC 2 cut(s) 67, 412
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 53, 245, 543, 580, 943
MroXI GAANNNNTTC 2 cut(s) 228, 912
MseI TTAA 4 cut(s) 23, 210, 279, 581
MslI CAYNNNNRTG 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 111, 653, 764
NdeII GATC 5 cut(s) 476, 489, 625, 736, 847
NlaIII CATG 3 cut(s) 450, 903, 950
NlaIV GGNNCC 4 cut(s) 152, 179, 429, 522
PdmI GAANNNNTTC 2 cut(s) 228, 912
PfeI GAWTC 2 cut(s) 339, 913
PflMI CCANNNNNTGG 1 cut(s) 952
PleI GAGTC 2 cut(s) 67, 411
PpsI GAGTC 2 cut(s) 67, 411
PsiI TTATAA 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 152, 179, 429, 522
PspPI GGNCC 3 cut(s) 103, 664, 775
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 4 cut(s) 23, 210, 279, 581
Sau3AI GATC 5 cut(s) 476, 489, 625, 736, 847
Sau96I GGNCC 3 cut(s) 103, 664, 775
SchI GAGTC 2 cut(s) 67, 412
ScrFI CCNGG 1 cut(s) 419
SfaNI GCATC 3 cut(s) 74, 817, 928
SinI GGWCC 2 cut(s) 664, 775
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 225, 969
SspMI CTAG 1 cut(s) 975
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 974
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 232, 406
TasI AATT 2 cut(s) 225, 969
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 339, 913
Tru1I TTAA 4 cut(s) 23, 210, 279, 581
Tru9I TTAA 4 cut(s) 23, 210, 279, 581
TscAI CASTG 2 cut(s) 666, 868
TspDTI ATGAA 2 cut(s) 425, 759
TspGWI ACGGA 1 cut(s) 502
TspRI CASTG 2 cut(s) 666, 868
Van91I CCANNNNNTGG 1 cut(s) 952
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 664, 775
XapI RAATTY 1 cut(s) 225
XmaJI CCTAGG 1 cut(s) 974
XmnI GAANNNNTTC 2 cut(s) 228, 912
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.