Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016449

Physical Location & Seq

Genomic Coordinates Reverse (-)

4556052 .. 4567818

Gene Structure 11767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTGGTTCAAAAGCTGTGCTTTAAAACACAACATCGTGTCTAAAAGAAAGTGTTTTAGAGGGGCATCATTGACTCCAAAGGAATATGCAGATACTTCAAAGGGCCTTCAATGCGACAAAACTGCCAATAACTACTGTCCTGAGTGTGGGTTCCGGCTGTTGGAGTGTGCAATAAGGAACCAGCACACCGATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCGAGATAATGACATTGGAAGAGGCATTGAGACAATGGACGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTTTGTACACTTCAAGCTCTGTGGGGAGATTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCAGGGCAAGGAACCAGATGTGTATTTCGCATGGGGCAAGGCTACTTTCAAGCAGGAAGGATCTGTGTTACGGATCAAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTCTACTGGTTTTGCAACCAGTTAAATGAGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCTCTCGGATATAGAGATGGCACTCAAAGCTTCACTGGACCATTTTGGACAGCCATCTTCACAGCCTTCAATGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCCCTCTGATATAGAGATGGCACTCAAAGCTTCATTGGACCATTTTGGACAGACATCTTTACAGCCTTCTGCACCACCTTTGCCCGAAGATGACTGCACCATTTGTTTTGGTCATAGAGTTGACACTGCCTTTGTTCCCTGCGGTCATCTTATTTGCTCACCATGTGCAGAAAAGATTCAGCATCAGAACATGCGGTGTCCCTTCTGCCGTGAGGTGGTGAAGAACTTTGCAATTCCTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neuralized zf-C3HC4_3

Protein Analysis

327

Amino Acids

36.31

Weight (kDa)

5.58

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	276 - 321	1e-12	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	276 - 316	3e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454391 RchiOBHm_Chr3g0454421 RchiOBHm_Chr3g0454451
rosa_laevigata	RLG00000025454
rosa_multiflora	Rmu_sc0000006.1_g000008 Rmu_sc0007209.1_g000006 Rmu_sc0013686.1_g000005 Rmu_sc0029999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425060
rosa_rugosa	Rorug02G0654500 Rorug02G0654500
rosa_samantha	Rh3AG059000 Rh3BG061000 Rh3CG059800
rosa_wichuraiana	Rw3G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AciI	CCGC	2 cut(s)	879, 931
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	3 cut(s)	484, 497, 731
AcsI	RAATTY	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	5 cut(s)	146, 160, 424, 542, 952
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	8 cut(s)	10, 99, 110, 302, 324, 343, 466, 696
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	6 cut(s)	15, 221, 283, 327, 656, 767
AluI	AGCT	6 cut(s)	15, 221, 283, 327, 656, 767
Alw26I	GTCTC	2 cut(s)	254, 500
AlwI	GGATC	3 cut(s)	484, 497, 731
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
Asp700I	GAANNNNTTC	2 cut(s)	228, 912
AspA2I	CCTAGG	1 cut(s)	974
AspS9I	GGNCC	3 cut(s)	103, 664, 775
AsuHPI	GGTGA	2 cut(s)	888, 967
AvaII	GGWCC	2 cut(s)	664, 775
AvrII	CCTAGG	1 cut(s)	974
BccI	CCATC	6 cut(s)	491, 611, 637, 688, 722, 748
BceAI	ACGGC	1 cut(s)	930
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	254, 500
BfaI	CTAG	1 cut(s)	975
BfrI	CTTAAG	1 cut(s)	209
BlnI	CCTAGG	1 cut(s)	974
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	2 cut(s)	664, 775
BmgT120I	GGNCC	3 cut(s)	103, 664, 775
BmiI	GGNNCC	4 cut(s)	152, 179, 429, 522
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	74, 928
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	418, 974
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 160, 424, 542, 952
Bse1I	ACTGG	3 cut(s)	569, 577, 666
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	418, 974
BseGI	GGATG	2 cut(s)	619, 730
BseLI	CCNNNNNNNGG	5 cut(s)	146, 160, 424, 542, 952
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	569, 577, 666
BsgI	GTGCAG	3 cut(s)	792, 817, 924
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	5 cut(s)	146, 160, 424, 542, 952
BsmAI	GTCTC	2 cut(s)	254, 500
BsmFI	GGGAC	1 cut(s)	921
BsnI	GGCC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	476, 489, 625, 736
BspACI	CCGC	2 cut(s)	879, 931
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	4 cut(s)	152, 179, 429, 522
BspPI	GGATC	3 cut(s)	484, 497, 731
BspTI	CTTAAG	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	569, 577, 666
BssECI	CCNNGG	2 cut(s)	418, 974
BssMI	GATC	4 cut(s)	476, 489, 625, 736
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	974
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	141, 274
BstF5I	GGATG	2 cut(s)	619, 730
BstKTI	GATC	4 cut(s)	479, 492, 628, 739
BstMAI	GTCTC	2 cut(s)	254, 500
BstMBI	GATC	4 cut(s)	476, 489, 625, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 653, 764
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	931
BstSCI	CCNGG	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	619, 730
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	659, 861
Cfr13I	GGNCC	3 cut(s)	103, 664, 775
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	316
CspCI	CAANNNNNGTGG	4 cut(s)	312, 347, 355, 390
CviAII	CATG	3 cut(s)	447, 900, 928
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	141, 274
DpnI	GATC	4 cut(s)	478, 491, 627, 738
DpnII	GATC	4 cut(s)	476, 489, 625, 736
DraI	TTTAAA	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	974
Eco47I	GGWCC	2 cut(s)	664, 775
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	974
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	3 cut(s)	450, 903, 931
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	3 cut(s)	446, 899, 927
FokI	GGATG	2 cut(s)	626, 737
FspBI	CTAG	1 cut(s)	975
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	450, 903, 931
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HindIII	AAGCTT	3 cut(s)	281, 654, 765
HinfI	GANTC	4 cut(s)	73, 339, 403, 913
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	888, 967
Hpy166II	GTNNAC	2 cut(s)	318, 859
Hpy188I	TCNGA	3 cut(s)	634, 745, 924
Hpy188III	TCNNGA	2 cut(s)	140, 233
Hpy8I	GTNNAC	2 cut(s)	318, 859
HpyAV	CCTTC	6 cut(s)	116, 296, 467, 702, 813, 949
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	89, 170, 573, 809, 834, 905, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 653, 764
HpyF3I	CTNAG	2 cut(s)	141, 274
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	450, 903, 931
Kzo9I	GATC	4 cut(s)	476, 489, 625, 736
LmnI	GCTCC	1 cut(s)	218
LweI	GCATC	2 cut(s)	74, 928
MaeI	CTAG	1 cut(s)	975
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	4 cut(s)	478, 491, 627, 738
MboI	GATC	4 cut(s)	476, 489, 625, 736
MboII	GAAGA	4 cut(s)	261, 675, 836, 970
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	225, 969
MlyI	GAGTC	2 cut(s)	67, 412
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	53, 245, 543, 580, 751, 943
MroXI	GAANNNNTTC	2 cut(s)	228, 912
MseI	TTAA	4 cut(s)	23, 210, 279, 581
MslI	CAYNNNNRTG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	111, 653, 764
NdeII	GATC	4 cut(s)	476, 489, 625, 736
NlaIII	CATG	3 cut(s)	450, 903, 931
NlaIV	GGNNCC	4 cut(s)	152, 179, 429, 522
NspI	RCATGY	1 cut(s)	931
PdmI	GAANNNNTTC	2 cut(s)	228, 912
PfeI	GAWTC	2 cut(s)	339, 913
PleI	GAGTC	2 cut(s)	67, 411
PpsI	GAGTC	2 cut(s)	67, 411
PsiI	TTATAA	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	152, 179, 429, 522
PspPI	GGNCC	3 cut(s)	103, 664, 775
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	4 cut(s)	23, 210, 279, 581
Sau3AI	GATC	4 cut(s)	476, 489, 625, 736
Sau96I	GGNCC	3 cut(s)	103, 664, 775
SchI	GAGTC	2 cut(s)	67, 412
ScrFI	CCNGG	1 cut(s)	419
SfaNI	GCATC	2 cut(s)	74, 928
SinI	GGWCC	2 cut(s)	664, 775
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	225, 969
SsiI	CCGC	2 cut(s)	879, 931
SspMI	CTAG	1 cut(s)	975
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	232, 406
TasI	AATT	2 cut(s)	225, 969
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	339, 913
Tru1I	TTAA	4 cut(s)	23, 210, 279, 581
Tru9I	TTAA	4 cut(s)	23, 210, 279, 581
TscAI	CASTG	2 cut(s)	666, 868
TspDTI	ATGAA	2 cut(s)	425, 759
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	2 cut(s)	666, 868
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	664, 775
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	931
XmaJI	CCTAGG	1 cut(s)	974
XmnI	GAANNNNTTC	2 cut(s)	228, 912
XspI	CTAG	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.