RLG00000025454

ubiquitin-like protein ligase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016449
Physical Location & Seq
Forward (+)
45823271 .. 45825986
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025454

Sequence Viewer

Length: 984 bp
ATGTGGTTCAAAAGCCGTGCTTTAAAACACAACATCCTATCTAAAAGAAAGTGCTTTACAGGGGTATCATTGACTCCCAAGGAATATGCAGATACTTCAAAGGGCCTTCAACGCGAGAAAACTGCCAATAACTACTGTCCTGAGTGTGCATCCAGTCTGTTGGAATGTGCAACACGAAACCAGCAGACTGATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCCAGATGATGACATTGGAAGAGGCATTGAGACAATGGATGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTCTGTACACTTCAAGCTCTATAGGGAGATTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCAGGGCAAGGAACCAGATGTGTATTTCGCATGGGACAAGGCTACTTTCAAGCGGGAAGGATCTGTGTTACAGATCGAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTCAACTGGTTTTGCAACCAGTTAAATGAGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCTCTCTGATATAGAGATGGCACTCAAAGCTTCACTGGACCATTTTGGACAGCCATCGTCACAGCCTTCAATGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCCCTCTGATATAGAGATGGCACTCAAAGCTTCATTGGACCATTTTGGACAGACATCTTTACAGCCTTCTGCACCACCTTTGCCCGAAGATGACTGCACCATTTGTTTTGATCATAGAGTTGACACTGCCTTTGTTCCCTGCGGTCATCTTATCTGCTCACCATGTGCAGAAAAGATTCAGCATCAGAACTTGCGGTGTCCATTCTGCCGTGAGGTGGTGGAGAACTTTGCAATTCCTAGGATTTGA

Protein Analysis

328

Amino Acids

36.29

Weight (kDa)

4.88

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 276 - 321 3.2e-13 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 276 - 316 3e-06 Ring finger domain
zf-C3HC4 PF00097 278 - 315 6.4e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 278 - 319 7.5e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 469, 879, 931
AclI AACGTT 1 cut(s) 345
AclWI GGATC 2 cut(s) 484, 731
AcsI RAATTY 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 424, 542, 952
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 9 cut(s) 10, 99, 110, 302, 324, 343, 466, 562, 696
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 5 cut(s) 221, 283, 327, 656, 767
AluI AGCT 5 cut(s) 221, 283, 327, 656, 767
Alw26I GTCTC 2 cut(s) 254, 500
AlwI GGATC 2 cut(s) 484, 731
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
Asp700I GAANNNNTTC 2 cut(s) 228, 912
AspA2I CCTAGG 1 cut(s) 974
AspS9I GGNCC 3 cut(s) 103, 664, 775
AsuHPI GGTGA 1 cut(s) 888
AvaII GGWCC 2 cut(s) 664, 775
AvrII CCTAGG 1 cut(s) 974
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BccI CCATC 6 cut(s) 491, 611, 637, 688, 722, 748
BceAI ACGGC 1 cut(s) 930
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 2 cut(s) 254, 500
BfaI CTAG 1 cut(s) 975
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 209
BlnI CCTAGG 1 cut(s) 974
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 664, 775
BmgT120I GGNCC 3 cut(s) 103, 664, 775
BmiI GGNNCC 2 cut(s) 429, 522
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 158, 259, 928
BsaJI CCNNGG 3 cut(s) 78, 418, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 542, 952
Bse1I ACTGG 4 cut(s) 153, 569, 577, 666
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 78, 418, 974
BseGI GGATG 5 cut(s) 33, 149, 274, 619, 730
BseLI CCNNNNNNNGG 3 cut(s) 424, 542, 952
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 4 cut(s) 153, 569, 577, 666
BsgI GTGCAG 3 cut(s) 792, 817, 924
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 424, 542, 952
BsmAI GTCTC 2 cut(s) 254, 500
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 5 cut(s) 476, 489, 625, 736, 847
BspACI CCGC 3 cut(s) 469, 879, 931
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 429, 522
BspPI GGATC 2 cut(s) 484, 731
BspTI CTTAAG 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 4 cut(s) 153, 569, 577, 666
BssECI CCNNGG 3 cut(s) 78, 418, 974
BssMI GATC 5 cut(s) 476, 489, 625, 736, 847
BssT1I CCWWGG 2 cut(s) 78, 974
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 244
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 141, 274
BstF5I GGATG 5 cut(s) 33, 149, 274, 619, 730
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 5 cut(s) 479, 492, 628, 739, 850
BstMAI GTCTC 2 cut(s) 254, 500
BstMBI GATC 5 cut(s) 476, 489, 625, 736, 847
BstMWI GCNNNNNNNGC 3 cut(s) 111, 653, 764
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 5 cut(s) 33, 149, 274, 619, 730
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 659, 861
Cfr13I GGNCC 3 cut(s) 103, 664, 775
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 2 cut(s) 447, 900
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 141, 274
DpnI GATC 5 cut(s) 478, 491, 627, 738, 849
DpnII GATC 5 cut(s) 476, 489, 625, 736, 847
DraI TTTAAA 1 cut(s) 24
DraIII CACNNNGTG 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 78, 974
Eco47I GGWCC 2 cut(s) 664, 775
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 2 cut(s) 78, 974
ErhI CCWWGG 2 cut(s) 78, 974
FaeI CATG 2 cut(s) 450, 903
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 1 cut(s) 464
FatI CATG 2 cut(s) 446, 899
FauI CCCGC 1 cut(s) 462
FbaI TGATCA 1 cut(s) 847
FokI GGATG 5 cut(s) 20, 136, 281, 626, 737
FspBI CTAG 1 cut(s) 975
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 2 cut(s) 450, 903
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 3 cut(s) 281, 654, 765
HinfI GANTC 4 cut(s) 73, 339, 403, 913
HphI GGTGA 1 cut(s) 888
Hpy166II GTNNAC 2 cut(s) 318, 859
Hpy188I TCNGA 3 cut(s) 634, 745, 924
Hpy188III TCNNGA 2 cut(s) 140, 233
Hpy8I GTNNAC 2 cut(s) 318, 859
HpyAV CCTTC 5 cut(s) 116, 296, 467, 702, 813
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 8 cut(s) 89, 149, 170, 573, 809, 834, 905, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 653, 764
HpyF3I CTNAG 2 cut(s) 141, 274
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 450, 903
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 476, 489, 625, 736, 847
LmnI GCTCC 1 cut(s) 218
LweI GCATC 3 cut(s) 158, 259, 928
MaeI CTAG 1 cut(s) 975
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 483, 684
MalI GATC 5 cut(s) 478, 491, 627, 738, 849
MboI GATC 5 cut(s) 476, 489, 625, 736, 847
MboII GAAGA 3 cut(s) 261, 506, 836
MflI RGATCY 1 cut(s) 476
MluCI AATT 2 cut(s) 225, 969
MlyI GAGTC 2 cut(s) 67, 412
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 245, 543, 580, 751, 943
MroXI GAANNNNTTC 2 cut(s) 228, 912
MseI TTAA 4 cut(s) 23, 210, 279, 581
MspCI CTTAAG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 111, 653, 764
NdeII GATC 5 cut(s) 476, 489, 625, 736, 847
NlaIII CATG 2 cut(s) 450, 903
NlaIV GGNNCC 2 cut(s) 429, 522
NmuCI GTSAC 1 cut(s) 684
PdmI GAANNNNTTC 2 cut(s) 228, 912
PfeI GAWTC 2 cut(s) 339, 913
PleI GAGTC 2 cut(s) 67, 411
PpsI GAGTC 2 cut(s) 67, 411
PsiI TTATAA 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 429, 522
PspPI GGNCC 3 cut(s) 103, 664, 775
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 4 cut(s) 23, 210, 279, 581
Sau3AI GATC 5 cut(s) 476, 489, 625, 736, 847
Sau96I GGNCC 3 cut(s) 103, 664, 775
SchI GAGTC 2 cut(s) 67, 412
ScrFI CCNGG 1 cut(s) 419
SfaNI GCATC 3 cut(s) 158, 259, 928
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 664, 775
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 225, 969
SsiI CCGC 3 cut(s) 469, 879, 931
SspMI CTAG 1 cut(s) 975
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 78, 974
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 406, 492
TasI AATT 2 cut(s) 225, 969
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 339, 913
Tru1I TTAA 4 cut(s) 23, 210, 279, 581
Tru9I TTAA 4 cut(s) 23, 210, 279, 581
TscAI CASTG 2 cut(s) 666, 868
TseFI GTSAC 1 cut(s) 684
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 2 cut(s) 425, 759
TspRI CASTG 2 cut(s) 666, 868
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 664, 775
XapI RAATTY 1 cut(s) 225
XmaJI CCTAGG 1 cut(s) 974
XmnI GAANNNNTTC 2 cut(s) 228, 912
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.