Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007209.1

Orthogroup ID

OG0016449

Physical Location & Seq

Genomic Coordinates Forward (+)

32410 .. 34412

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007209.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggacgccttagttaagcttggttataaagaagttgaaggcgagtttttgtacacttcaagctctgtggggagattcaacgtttgggctaccttttcagtcaaaaatcgtgggattgctatattttatggtggcaagagtcgaatgaatgtccagggcaaggaaccagatgtgtatttcgcatggggcaaggctactttcaagcaggaaggatctgtgttacggatcaaagatggattggagacttccttgctggaaccagcagaacctccatatttgggtagcaaagagatattctactggttttgcaaccagttaaatgaggctattggtttgggttctgtggtggatgatggctttgatctctcggatatagagatggcactcaaagcttcactggaccattttggacagccatcttcacagccttcattggctattggtttgggttctgtggtggatgatggctttgatccctctgatatagagatggcactcaaagcttcattggaccattttggacagacatctttacagccttctgcaccacctttgcccgaagatgactgcaccatttgttttggtcatagagttgacactgcctttgttccctgcggtcatcttatttgctcaccatgtgcagaaaagattcagcatcagaacatgcggtgtcccttctgccgtgaggtggtgaagaactttgcaattcctaggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neuralized zf-C3HC4_3

Protein Analysis

239

Amino Acids

26.28

Weight (kDa)

4.95

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454391 RchiOBHm_Chr3g0454421 RchiOBHm_Chr3g0454451
rosa_laevigata	RLG00000025454
rosa_multiflora	Rmu_sc0000006.1_g000008 Rmu_sc0007209.1_g000006 Rmu_sc0013686.1_g000005 Rmu_sc0029999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425060
rosa_rugosa	Rorug02G0654500 Rorug02G0654500
rosa_samantha	Rh3AG059000 Rh3BG061000 Rh3CG059800
rosa_wichuraiana	Rw3G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AciI	CCGC	2 cut(s)	615, 667
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	3 cut(s)	220, 233, 467
AcyI	GRCGYC	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	160, 278, 688
AgsI	TTSAA	4 cut(s)	38, 60, 79, 202
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	19, 63, 392, 503
AluI	AGCT	4 cut(s)	19, 63, 392, 503
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	220, 233, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
Asp700I	GAANNNNTTC	1 cut(s)	648
AspA2I	CCTAGG	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	400, 511
AsuHPI	GGTGA	2 cut(s)	624, 703
AvaII	GGWCC	2 cut(s)	400, 511
AvrII	CCTAGG	1 cut(s)	710
BccI	CCATC	6 cut(s)	227, 347, 373, 424, 458, 484
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	711
BlnI	CCTAGG	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	400, 511
BmgT120I	GGNCC	2 cut(s)	400, 511
BmiI	GGNNCC	2 cut(s)	165, 258
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	664
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	154, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 278, 688
Bse1I	ACTGG	3 cut(s)	305, 313, 402
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	154, 710
BseGI	GGATG	2 cut(s)	355, 466
BseLI	CCNNNNNNNGG	3 cut(s)	160, 278, 688
BseNI	ACTGG	3 cut(s)	305, 313, 402
BsgI	GTGCAG	3 cut(s)	528, 553, 660
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	160, 278, 688
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	657
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	212, 225, 361, 472
BspACI	CCGC	2 cut(s)	615, 667
BspLI	GGNNCC	2 cut(s)	165, 258
BspPI	GGATC	3 cut(s)	220, 233, 467
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	305, 313, 402
BssECI	CCNNGG	2 cut(s)	154, 710
BssMI	GATC	4 cut(s)	212, 225, 361, 472
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	710
Bst2UI	CCWGG	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	355, 466
BstKTI	GATC	4 cut(s)	215, 228, 364, 475
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	212, 225, 361, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 500
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	355, 466
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	395, 597
Cfr13I	GGNCC	2 cut(s)	400, 511
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 91, 126
CviAII	CATG	3 cut(s)	183, 636, 664
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	4 cut(s)	214, 227, 363, 474
DpnII	GATC	4 cut(s)	212, 225, 361, 472
DraIII	CACNNNGTG	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	710
Eco47I	GGWCC	2 cut(s)	400, 511
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	3 cut(s)	186, 639, 667
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	3 cut(s)	182, 635, 663
FokI	GGATG	2 cut(s)	362, 473
FspBI	CTAG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	186, 639, 667
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	3 cut(s)	17, 390, 501
HinfI	GANTC	3 cut(s)	75, 139, 649
HphI	GGTGA	2 cut(s)	624, 703
Hpy166II	GTNNAC	2 cut(s)	54, 595
Hpy188I	TCNGA	3 cut(s)	370, 481, 660
Hpy8I	GTNNAC	2 cut(s)	54, 595
HpyAV	CCTTC	5 cut(s)	32, 203, 438, 549, 685
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	309, 545, 570, 641, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 500
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	186, 639, 667
Kzo9I	GATC	4 cut(s)	212, 225, 361, 472
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	4 cut(s)	214, 227, 363, 474
MboI	GATC	4 cut(s)	212, 225, 361, 472
MboII	GAAGA	3 cut(s)	411, 572, 706
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	279, 316, 487, 679
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	15, 317
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	389, 500
NdeII	GATC	4 cut(s)	212, 225, 361, 472
NlaIII	CATG	3 cut(s)	186, 639, 667
NlaIV	GGNNCC	2 cut(s)	165, 258
NspI	RCATGY	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	75, 649
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	165, 258
PspPI	GGNCC	2 cut(s)	400, 511
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	15, 317
Sau3AI	GATC	4 cut(s)	212, 225, 361, 472
Sau96I	GGNCC	2 cut(s)	400, 511
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	9 cut(s)	21, 65, 84, 95, 271, 394, 505, 553, 690
SfaNI	GCATC	1 cut(s)	664
SinI	GGWCC	2 cut(s)	400, 511
Sse9I	AATT	1 cut(s)	705
SsiI	CCGC	2 cut(s)	615, 667
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	710
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	705
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	75, 649
Tru1I	TTAA	2 cut(s)	15, 317
Tru9I	TTAA	2 cut(s)	15, 317
TscAI	CASTG	2 cut(s)	402, 604
TspDTI	ATGAA	3 cut(s)	161, 420, 495
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	402, 604
VpaK11BI	GGWCC	2 cut(s)	400, 511
XceI	RCATGY	1 cut(s)	667
XmaJI	CCTAGG	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.