Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029999.1

Orthogroup ID

OG0016449

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 805

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029999.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

gctattggtttgggttctgtggtggatgatggctttgatccctctgatatagagatggcactcaaagcttcattggaccattttggacagacatctttacagccttctgcaccacctttgcccgaagatgactgcaccatctgttttgatcatagagttgacactgcctttgttccctgtggtcatcttatctgctcaccatgtgcagaaaagattcagcatcagaacatgcggtgtcccttctgccgtgaggtggtgaagaactttgcaattcctaggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neuralized zf-C3HC4_3

Protein Analysis

94

Amino Acids

10.28

Weight (kDa)

4.88

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454391 RchiOBHm_Chr3g0454421 RchiOBHm_Chr3g0454451
rosa_laevigata	RLG00000025454
rosa_multiflora	Rmu_sc0000006.1_g000008 Rmu_sc0007209.1_g000006 Rmu_sc0013686.1_g000005 Rmu_sc0029999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425060
rosa_rugosa	Rorug02G0654500 Rorug02G0654500
rosa_samantha	Rh3AG059000 Rh3BG061000 Rh3CG059800
rosa_wichuraiana	Rw3G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	189, 268
AvaII	GGWCC	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	275
BccI	CCATC	3 cut(s)	23, 49, 146
BceAI	ACGGC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	276
BlnI	CCTAGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmsI	GCATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	253
BsgI	GTGCAG	3 cut(s)	93, 118, 225
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	37, 148
BspACI	CCGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	37, 148
BssT1I	CCWWGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	40, 151
BstMBI	GATC	2 cut(s)	37, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	2 cut(s)	201, 229
CviJI	RGCY	3 cut(s)	33, 68, 103
CviKI_1	RGCY	3 cut(s)	33, 68, 103
DpnI	GATC	2 cut(s)	39, 150
DpnII	GATC	2 cut(s)	37, 148
DraIII	CACNNNGTG	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	204, 232
FaiI	YATR	4 cut(s)	50, 153, 202, 230
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	200, 228
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	1 cut(s)	276
Hin1II	CATG	2 cut(s)	204, 232
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	214
HphI	GGTGA	2 cut(s)	189, 268
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	46, 225
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	114, 250
HpyCH4V	TGCA	4 cut(s)	110, 135, 206, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	204, 232
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	37, 148
LpnPI	CCDG	1 cut(s)	190
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	276
MalI	GATC	2 cut(s)	39, 150
MboI	GATC	2 cut(s)	37, 148
MboII	GAAGA	2 cut(s)	137, 271
MluCI	AATT	1 cut(s)	270
MnlI	CCTC	2 cut(s)	52, 244
MroXI	GAANNNNTTC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	37, 148
NlaIII	CATG	2 cut(s)	204, 232
NspI	RCATGY	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	37, 148
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	3 cut(s)	70, 118, 255
SfaNI	GCATC	1 cut(s)	229
SgeI	CNNG	5 cut(s)	134, 189, 213, 241, 260
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	275
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	232
XmaJI	CCTAGG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.