Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016449

Physical Location & Seq

Genomic Coordinates Reverse (-)

3924179 .. 3930438

Gene Structure 6260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTACGAACGATTCTTCGAAGTGCAACAGCGATGGGCCCAAGGTCCAACGGCCCATGGAGGAGGCTTGCGCGCCGTCGTCGACAACTGGTGGATATCAAAATGTGGTTCAGAAGCGGTGCTTTAAAACACAACATCGTGTCTAAAAGAAAGTGTTTTAGAGGGGCATCATTGACTGCAAAGCAATATGCAGAAACTTCAAAGGGCCTTCAACGCGACAAAACTGCCAATAACTACTGTCCTGAGTGTGGGTTCCGGCTGTTGGAGTGTGCAATAAGAAACCAGCACACCGATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCGAGATAATGACATTGGAAGAGGCATTGAGACAATGGACGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTTTGTACACTTCAAGCTCTGTGGGGAGATTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCAGGGCAAGGAACCAGATGTGTATTTCGCATGGGGCAAGGCTACTTTCAAGCAGGAAGGATCTGTGTTACGGATCAAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTCTACTGGTTTTGCAACCAGTTAAATGAGGTGATGATGGAAAGTGTGCGATATTTGGAGCAGACTGATCTCAGAAAAGCATGCAAGAGTTTGAAGAAAGAAAGGAAATATTTGGGATGGATGGAAAAGAGAGACGAGGTGCAGATGGATCAAGCAGCAGTTTTCGAGGAAGCTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.32

Weight (kDa)

9.53

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454391 RchiOBHm_Chr3g0454421 RchiOBHm_Chr3g0454451
rosa_laevigata	RLG00000025454
rosa_multiflora	Rmu_sc0000006.1_g000008 Rmu_sc0007209.1_g000006 Rmu_sc0013686.1_g000005 Rmu_sc0029999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425060
rosa_rugosa	Rorug02G0654500 Rorug02G0654500
rosa_samantha	Rh3AG059000 Rh3BG061000 Rh3CG059800
rosa_wichuraiana	Rw3G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	2 cut(s)	73, 216
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	3 cut(s)	586, 599, 816
AcsI	RAATTY	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	248, 262, 526, 644
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	7 cut(s)	201, 212, 404, 426, 445, 568, 754
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	4 cut(s)	323, 385, 429, 833
AluI	AGCT	4 cut(s)	323, 385, 429, 833
Alw26I	GTCTC	3 cut(s)	356, 602, 786
AlwI	GGATC	3 cut(s)	586, 599, 816
AoxI	GGCC	3 cut(s)	37, 52, 205
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	815, 833
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	73, 75
AspS9I	GGNCC	5 cut(s)	37, 38, 45, 53, 205
AsuHPI	GGTGA	1 cut(s)	703
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	820, 827
BccI	CCATC	6 cut(s)	28, 593, 691, 771, 775, 799
BceAI	ACGGC	2 cut(s)	60, 67
BcgI	CGANNNNNNTGC	3 cut(s)	206, 240, 815
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	3 cut(s)	356, 602, 786
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	816, 834
BlsI	GCNGC	2 cut(s)	817, 835
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	5 cut(s)	37, 38, 45, 53, 205
BmiI	GGNNCC	4 cut(s)	39, 254, 531, 624
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	41, 56, 520
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 262, 526, 644
Bse1I	ACTGG	3 cut(s)	93, 671, 679
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	41, 56, 520
BseGI	GGATG	2 cut(s)	782, 786
BseLI	CCNNNNNNNGG	4 cut(s)	248, 262, 526, 644
BseMII	CTCAG	2 cut(s)	234, 745
BseNI	ACTGG	3 cut(s)	93, 671, 679
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	820, 827
BsgI	GTGCAG	1 cut(s)	821
Bsh1236I	CGCG	2 cut(s)	73, 216
BshFI	GGCC	3 cut(s)	39, 54, 207
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	4 cut(s)	248, 262, 526, 644
BsmAI	GTCTC	3 cut(s)	356, 602, 786
BsmBI	CGTCTC	1 cut(s)	786
BsnI	GGCC	3 cut(s)	39, 54, 207
Bsp119I	TTCGAA	1 cut(s)	19
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	578, 591, 727, 808
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	3 cut(s)	39, 54, 207
BspCNI	CTCAG	2 cut(s)	235, 744
BspFNI	CGCG	2 cut(s)	73, 216
BspLI	GGNNCC	4 cut(s)	39, 254, 531, 624
BspPI	GGATC	3 cut(s)	586, 599, 816
BspT104I	TTCGAA	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	93, 671, 679
BssECI	CCNNGG	3 cut(s)	41, 56, 520
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	4 cut(s)	578, 591, 727, 808
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	41, 56
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	69, 73, 742
BstDEI	CTNAG	3 cut(s)	243, 376, 731
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	782, 786
BstFNI	CGCG	2 cut(s)	73, 216
BstHHI	GCGC	2 cut(s)	73, 75
BstKTI	GATC	4 cut(s)	581, 594, 730, 811
BstMAI	GTCTC	3 cut(s)	356, 602, 786
BstMBI	GATC	4 cut(s)	578, 591, 727, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	73, 216
BstV1I	GCAGC	2 cut(s)	820, 827
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	39, 54, 207
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	782, 786
Cac8I	GCNNGC	3 cut(s)	69, 73, 742
CfoI	GCGC	2 cut(s)	73, 75
Cfr13I	GGNCC	5 cut(s)	37, 38, 45, 53, 205
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	4 cut(s)	414, 449, 457, 492
CviAII	CATG	3 cut(s)	57, 549, 741
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	243, 376, 731
DpnI	GATC	4 cut(s)	580, 593, 729, 810
DpnII	GATC	4 cut(s)	578, 591, 727, 808
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	41, 56
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	41, 56
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	41, 56
Esp3I	CGTCTC	1 cut(s)	786
FaeI	CATG	3 cut(s)	60, 552, 744
FaiI	YATR	9 cut(s)	58, 189, 296, 393, 488, 495, 550, 640, 742
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	3 cut(s)	56, 548, 740
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	816, 834
FokI	GGATG	2 cut(s)	789, 793
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	816, 834
GlaI	GCGC	2 cut(s)	72, 74
GluI	GCNGC	2 cut(s)	816, 834
HaeIII	GGCC	3 cut(s)	39, 54, 207
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	73, 75
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	60, 552, 744
Hin6I	GCGC	2 cut(s)	71, 73
HinP1I	GCGC	2 cut(s)	71, 73
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	13, 441, 505
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	2 cut(s)	83, 420
Hpy188I	TCNGA	2 cut(s)	113, 734
Hpy188III	TCNNGA	2 cut(s)	242, 335
Hpy8I	GTNNAC	2 cut(s)	83, 420
Hpy99I	CGWCG	2 cut(s)	81, 84
HpyAV	CCTTC	3 cut(s)	218, 398, 569
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	8 cut(s)	26, 179, 191, 272, 675, 744, 802, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	3 cut(s)	243, 376, 731
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	60, 552, 744
HspAI	GCGC	2 cut(s)	71, 73
Kzo9I	GATC	4 cut(s)	578, 591, 727, 808
LmnI	GCTCC	2 cut(s)	320, 718
Lsp1109I	GCAGC	2 cut(s)	820, 827
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	3, 585
MalI	GATC	4 cut(s)	580, 593, 729, 810
MboI	GATC	4 cut(s)	578, 591, 727, 808
MboII	GAAGA	3 cut(s)	8, 363, 766
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	72, 243
MnlI	CCTC	8 cut(s)	54, 57, 155, 347, 645, 682, 790, 820
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	4 cut(s)	125, 312, 381, 683
MslI	CAYNNNNRTG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	73, 216
MwoI	GCNNNNNNNGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	578, 591, 727, 808
NlaIII	CATG	3 cut(s)	60, 552, 744
NlaIV	GGNNCC	4 cut(s)	39, 254, 531, 624
NspI	RCATGY	1 cut(s)	744
NspV	TTCGAA	1 cut(s)	19
PaeI	GCATGC	1 cut(s)	744
PauI	GCGCGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	13, 441
PkrI	GCNGC	2 cut(s)	817, 835
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	4 cut(s)	39, 254, 531, 624
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	5 cut(s)	37, 38, 45, 53, 205
PsuI	RGATCY	1 cut(s)	578
PteI	GCGCGC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	125, 312, 381, 683
SatI	GCNGC	2 cut(s)	816, 834
Sau3AI	GATC	4 cut(s)	578, 591, 727, 808
Sau96I	GGNCC	5 cut(s)	37, 38, 45, 53, 205
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	41, 56
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	5 cut(s)	19, 82, 334, 508, 825
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	13, 441
Tru1I	TTAA	4 cut(s)	125, 312, 381, 683
Tru9I	TTAA	4 cut(s)	125, 312, 381, 683
TseI	GCWGC	2 cut(s)	815, 833
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.