Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016449

Physical Location & Seq

Genomic Coordinates Forward (+)

46086550 .. 46089052

Gene Structure 2503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGGTTCATAAAACACAACATCCTGTCTGAAAGAAAGTGTTTTACAGGGGTGTCATTGACTCCCAAGCAATATGCAGATACTTCAATGGGCCTTCAACGCGACAAAACTGCCAATAACTACTGTCCTGAGTGTGGATTCAGTCTGTTAGAATGTGCAATACGAAACCAGCAGACTGATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCGAGATGATGACATTGGAAGAGGCATCGAGACAATGGATGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTCTGTACACTTCAAGCTCTATGGGGAGCTTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCAGGGCAAGGAACCAGATGTGTATTTCGCATGGGGCAAGGCTACTTTCAAGCGGGAAGGATCTGTGCTACAGATCGAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTCAACTGGTTTTGCAACCAGTTAAATGAGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCTCTTTGATATAGAGATGGCACTCAAAGCTTCACTGGACCATTTTGGACAGCCATCTTCACAGCCTTCAATGGCTGTTGGTTTGGGTTCTGTTGTGGATGATGGCTTTGATCTCTCTGATATAGAGATGGCACTCAAAGCTTCATTGGACCATTTTGGACAGCCATCTTTACAGCCCTCTGCACCACCTTTGCCCGAAGATGACTGCACCATCTGTTTTGATCATAGAGTTGACACTGCCTTTGTTCCCTGCGGTCATCTTATCTGCTCACCATGTGCAGAAAAGATTCAGCATCAGAACTTGCGGTGTCCCTTCTGCCGTGAGGTGGTGGAGAACTTTGCAATTCCTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neuralized zf-C3HC4_3

Protein Analysis

323

Amino Acids

35.9

Weight (kDa)

4.71

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	272 - 317	3.1e-13	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	272 - 312	2.9e-06	Ring finger domain
zf-C3HC4	PF00097	274 - 311	6.3e-06	Zinc finger, C3HC4 type (RING finger)
Prok-RING_4	PF14447	274 - 315	7.4e-06	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454391 RchiOBHm_Chr3g0454421 RchiOBHm_Chr3g0454451
rosa_laevigata	RLG00000025454
rosa_multiflora	Rmu_sc0000006.1_g000008 Rmu_sc0007209.1_g000006 Rmu_sc0013686.1_g000005 Rmu_sc0029999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425060
rosa_rugosa	Rorug02G0654500 Rorug02G0654500
rosa_samantha	Rh3AG059000 Rh3BG061000 Rh3CG059800
rosa_wichuraiana	Rw3G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	457, 867, 919
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	890
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	134, 412, 530, 940
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	8 cut(s)	87, 98, 290, 312, 331, 454, 550, 684
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	6 cut(s)	209, 271, 315, 327, 644, 755
AluI	AGCT	6 cut(s)	209, 271, 315, 327, 644, 755
Alw26I	GTCTC	2 cut(s)	242, 488
AlwI	GGATC	1 cut(s)	472
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	839, 871
Asp700I	GAANNNNTTC	2 cut(s)	216, 900
AspA2I	CCTAGG	1 cut(s)	962
AspS9I	GGNCC	3 cut(s)	91, 652, 763
AsuHPI	GGTGA	1 cut(s)	876
AvaII	GGWCC	2 cut(s)	652, 763
AvrII	CCTAGG	1 cut(s)	962
BccI	CCATC	8 cut(s)	479, 599, 625, 676, 710, 736, 787, 833
BceAI	ACGGC	1 cut(s)	918
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	2 cut(s)	242, 488
BfaI	CTAG	1 cut(s)	963
BfmI	CTRYAG	1 cut(s)	473
BfrI	CTTAAG	1 cut(s)	197
BlnI	CCTAGG	1 cut(s)	962
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	2 cut(s)	652, 763
BmgT120I	GGNCC	3 cut(s)	91, 652, 763
BmiI	GGNNCC	2 cut(s)	417, 510
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	247, 252, 916
BsaJI	CCNNGG	2 cut(s)	406, 962
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 412, 530, 940
Bse1I	ACTGG	3 cut(s)	557, 565, 654
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	406, 962
BseGI	GGATG	4 cut(s)	21, 262, 607, 718
BseLI	CCNNNNNNNGG	4 cut(s)	134, 412, 530, 940
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	557, 565, 654
BsgI	GTGCAG	3 cut(s)	780, 805, 912
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	4 cut(s)	134, 412, 530, 940
BsmAI	GTCTC	2 cut(s)	242, 488
BsmFI	GGGAC	1 cut(s)	909
BsnI	GGCC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	5 cut(s)	464, 477, 613, 724, 835
BspACI	CCGC	3 cut(s)	457, 867, 919
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	417, 510
BspPI	GGATC	1 cut(s)	472
BspTI	CTTAAG	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	557, 565, 654
BssECI	CCNNGG	2 cut(s)	406, 962
BssMI	GATC	5 cut(s)	464, 477, 613, 724, 835
BssT1I	CCWWGG	1 cut(s)	962
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	129, 262
BstF5I	GGATG	4 cut(s)	21, 262, 607, 718
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	5 cut(s)	467, 480, 616, 727, 838
BstMAI	GTCTC	2 cut(s)	242, 488
BstMBI	GATC	5 cut(s)	464, 477, 613, 724, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 641, 752
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	473
BstUI	CGCG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	21, 262, 607, 718
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	2 cut(s)	647, 849
Cfr13I	GGNCC	3 cut(s)	91, 652, 763
Csp6I	GTAC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	2 cut(s)	435, 888
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	129, 262
DpnI	GATC	5 cut(s)	466, 479, 615, 726, 837
DpnII	GATC	5 cut(s)	464, 477, 613, 724, 835
DraIII	CACNNNGTG	1 cut(s)	890
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	962
Eco47I	GGWCC	2 cut(s)	652, 763
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	962
FaeI	CATG	2 cut(s)	438, 891
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	2 cut(s)	434, 887
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	835
FokI	GGATG	4 cut(s)	8, 269, 614, 725
FspBI	CTAG	1 cut(s)	963
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	438, 891
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	3 cut(s)	269, 642, 753
HinfI	GANTC	4 cut(s)	61, 138, 391, 901
HphI	GGTGA	1 cut(s)	876
Hpy166II	GTNNAC	2 cut(s)	306, 847
Hpy188I	TCNGA	3 cut(s)	31, 733, 912
Hpy188III	TCNNGA	3 cut(s)	128, 221, 247
Hpy8I	GTNNAC	2 cut(s)	306, 847
HpyAV	CCTTC	5 cut(s)	104, 284, 455, 690, 937
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	77, 158, 561, 797, 822, 893, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 641, 752
HpyF3I	CTNAG	2 cut(s)	129, 262
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	438, 891
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	464, 477, 613, 724, 835
LmnI	GCTCC	2 cut(s)	206, 324
LweI	GCATC	3 cut(s)	247, 252, 916
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	1 cut(s)	333
MalI	GATC	5 cut(s)	466, 479, 615, 726, 837
MboI	GATC	5 cut(s)	464, 477, 613, 724, 835
MboII	GAAGA	4 cut(s)	249, 494, 663, 824
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	2 cut(s)	213, 957
MlyI	GAGTC	2 cut(s)	55, 400
MnlI	CCTC	5 cut(s)	233, 531, 568, 802, 931
MroXI	GAANNNNTTC	2 cut(s)	216, 900
MseI	TTAA	3 cut(s)	198, 267, 569
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	99, 641, 752
NdeII	GATC	5 cut(s)	464, 477, 613, 724, 835
NlaIII	CATG	2 cut(s)	438, 891
NlaIV	GGNNCC	2 cut(s)	417, 510
PdmI	GAANNNNTTC	2 cut(s)	216, 900
PfeI	GAWTC	2 cut(s)	138, 901
PleI	GAGTC	2 cut(s)	55, 399
PpsI	GAGTC	2 cut(s)	55, 399
PsiI	TTATAA	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	417, 510
PspPI	GGNCC	3 cut(s)	91, 652, 763
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	3 cut(s)	198, 267, 569
Sau3AI	GATC	5 cut(s)	464, 477, 613, 724, 835
Sau96I	GGNCC	3 cut(s)	91, 652, 763
SchI	GAGTC	2 cut(s)	55, 400
ScrFI	CCNGG	1 cut(s)	407
SfaNI	GCATC	3 cut(s)	247, 252, 916
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	2 cut(s)	652, 763
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	213, 957
SsiI	CCGC	3 cut(s)	457, 867, 919
SspMI	CTAG	1 cut(s)	963
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	220, 246, 394, 480
TasI	AATT	2 cut(s)	213, 957
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	138, 901
Tru1I	TTAA	3 cut(s)	198, 267, 569
Tru9I	TTAA	3 cut(s)	198, 267, 569
TscAI	CASTG	2 cut(s)	654, 856
TspDTI	ATGAA	2 cut(s)	413, 747
TspRI	CASTG	2 cut(s)	654, 856
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	652, 763
XapI	RAATTY	1 cut(s)	213
XmaJI	CCTAGG	1 cut(s)	962
XmnI	GAANNNNTTC	2 cut(s)	216, 900
XspI	CTAG	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.