Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012487

Physical Location & Seq

Genomic Coordinates Forward (+)

11017178 .. 11022084

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGCCCTCCTCTCCTTCTCTCTCTATAAATCCCTCTCTCTCTCCCCCCTCTCTCTCCACAGCCACTCCCACTTCTTCATCATCTTTTCCTCATTCGTCACCTCCAATATTCCTCAAATTCCCGGGCAACCAATATTCTCGGACAAAACCCATTAGCCTTTCTGCTCGTAAAGCTCGCTCGGGCTACTCAGAAAGTAGAAAACTTGAGGTTAGAGCAAGCAAGATGACGATTACAGAAGTTGAGATTGAAGAAGAGGAAGAGGGTCCTCCCCCTTATGTTGAATCGGAGACCAACTCGAGGCCTCGCCGCATTGCTCTGTTTGTTGAGCCTTCCCCTTTTGCATATGTGTCAGGGTATAAGAATCGATTCCAGAATTTCATTAGGTACTTGCGTGAAATGGGGGATGAGGTGATGGTTGTGACAACACACGAAGGAGTGCCCGAGGAATTTTATGGAGCAAAATGTATTGGATCGCGAAGCTTCCCCTGCCCTTGGTATCAGAAGGTGCCCCTTTCCCTTGCGCTCAGTCCTAGAATAATTTCAGAGGTTGCCCATTTCAAGCCTGACATCATACATGCATCCTCACCTGGAATCATGGTATTCGGTGCTCTCATCATCGCTAAATTATTGTCTGTCCCCATTGTGATGTCATACCATACTCATGTGCCAGTATATATTCCAAGATACACCTTCAGTTGGTTGGTGAAACCCATGTGGATGGTTATAAAATTCCTGCACACAGCTGCTGATCTCACACTAGTGCCATCAGCGGCAATCGCTAAGGATCTCCAAGTTGCTGGGGTCGCAGCAGCTAACACAATTCGTCTTTGGAATAAGGGTGTTGATTCAGAAAGCTTCCATCCTCGCTTCCGTTCTGATGAAATGCGTTCAAGACTAAGCAATGGTGAACCTGAGAAACCTTTAATAGTCCATGTTGGAAGACTTGGAGTCGAGAAGAGCTTGGATTTTCTAAAAAGTGTCATGGATAGGCTTCCAGAAGCACGAATTGCTTTTATTGGAGATGGACCATACAGGGCGGAGCTGGAAGAATTATTCTCTGGCATGCCTGCAGTATTTACAGGAATGTTAGGAGGTGAGGAGCTCTCTCAGGCGTATGCCAGCGGGGATGTTTTCGTGATGCCTTCAGAATCAGAGACACTTGGGCTTGTGGTATTGGAGGCTATGGCTTCAGGCATTCCTGTGGTAGGAGCTCGCTCAGGTGGAATCCCAGATATAATTCCGGAAGACCAGGAGGGGAAAACAGGATTTCTCTATAATTACAACGATCTTGATGACTGCTTAAGCAAATTGCGGCCTCTGTTGGAGAACAAGGAATTAAGGGAAACAATTGGCCAAGCCGCACGCAAAGAGACAGAGAAGTTTGACTGGAAGGCAGCCACTCGAGTGATACGAAATGAACAATACAATGCTGCCATTTGGTTTTGGAGGAGGAGAAGAGCACAATTCTTGAGACCTCTGCAATGGCTGATGAAACGTATCTTCCCACAAACCCCACCGGAAATTAAGTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006643 GO:0006664 GO:0006790 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009941 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031975 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046505 GO:0046506 GO:0050896 GO:0051716 GO:0070085 GO:0071496 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

511

Amino Acids

57.36

Weight (kDa)

8.7

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	118 - 284	9.8e-27	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	118 - 273	1.2e-16	Glycosyl transferase 4-like domain
Glycos_transf_1	PF00534	303 - 456	3.9e-28	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	307 - 443	1.1e-26	Glycosyl transferases group 1
Glyco_trans_1_2	PF13524	323 - 459	1.5e-10	Glycosyl transferase-like
GT4-conflict	PF20706	366 - 416	2.7e-07	Family 4 Glycosyltransferase in conflict systems

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01220 AT5G01220
fragaria_vesca	FvH4_6g11930
malus_domestica	MD04G1148000.v1.1 MD12G1161400.v1.1
prunus_persica	Prupe.6G271800_v2.0.a1
pyrus_communis	pycom04g13380 pycom12g15320
rosa_chinensis	RchiOBHm_Chr3g0463701
rosa_laevigata	RLG00000024763
rosa_multiflora	Rmu_sc0003267.1_g000033
rosa_roxburghii	Rroxscaffold_6G00416360
rosa_rugosa	Rorug03G0067000 Rorug03G0067100
rosa_samantha	Rh3AG124100 Rh3BG128700 Rh3CG130900 Rh3DG129300
rosa_wichuraiana	Rw3G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	1240
AciI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
AclWI	GGATC	2 cut(s)	478, 792
AcoI	YGGCCR	1 cut(s)	1351
AcsI	RAATTY	4 cut(s)	116, 373, 446, 728
AcuI	CTGAAG	3 cut(s)	676, 1128, 1173
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
AflII	CTTAAG	1 cut(s)	1300
AgsI	TTSAA	4 cut(s)	248, 281, 559, 891
AhdI	GACNNNNNGTC	1 cut(s)	947
AhlI	ACTAGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	586, 1248
AleI	CACNNNNGTG	2 cut(s)	758, 1403
AluBI	AGCT	9 cut(s)	173, 480, 743, 812, 855, 960, 1042, 1102, 1211
AluI	AGCT	9 cut(s)	173, 480, 743, 812, 855, 960, 1042, 1102, 1211
Alw21I	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
Alw26I	GTCTC	4 cut(s)	281, 1148, 1364, 1465
AlwI	GGATC	2 cut(s)	478, 792
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
Aor13HI	TCCGGA	1 cut(s)	1240
AoxI	GGCC	3 cut(s)	299, 1313, 1351
ApeKI	GCWGC	5 cut(s)	743, 806, 809, 1394, 1430
ApoI	RAATTY	4 cut(s)	116, 373, 446, 728
Asp700I	GAANNNNTTC	2 cut(s)	365, 538
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	263, 1025
AsuC2I	CCSGG	2 cut(s)	122, 123
AsuHPI	GGTGA	6 cut(s)	90, 421, 576, 715, 917, 1106
AvaI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
AvaII	GGWCC	2 cut(s)	263, 1025
BaeGI	GKGCMC	2 cut(s)	441, 510
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BalI	TGGCCA	1 cut(s)	1353
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	1104, 1213
BbsI	GAAGAC	2 cut(s)	946, 1251
Bbv12I	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
BbvI	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BccI	CCATC	5 cut(s)	406, 712, 772, 867, 1016
BciT130I	CCWGG	2 cut(s)	588, 1250
BcnI	CCSGG	2 cut(s)	122, 123
BcoDI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	531, 758
BfmI	CTRYAG	1 cut(s)	1068
BfrI	CTTAAG	1 cut(s)	1300
BisI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
BlsI	GCNGC	9 cut(s)	308, 745, 772, 808, 811, 1314, 1360, 1396, 1432
Bme1390I	CCNGG	4 cut(s)	122, 123, 588, 1250
Bme18I	GGWCC	2 cut(s)	263, 1025
BmeRI	GACNNNNNGTC	1 cut(s)	947
BmeT110I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
BmgT120I	GGNCC	2 cut(s)	263, 1025
BmiI	GGNNCC	2 cut(s)	264, 507
BmrFI	CCNGG	4 cut(s)	122, 123, 588, 1250
BmsI	GCATC	2 cut(s)	587, 1128
BpiI	GAAGAC	2 cut(s)	946, 1251
BplI	GAGNNNNNCTC	4 cut(s)	278, 310, 1088, 1120
Bpu10I	CCTNAGC	2 cut(s)	780, 1216
BpuEI	CTTGAG	2 cut(s)	224, 1489
BpuMI	CCSGG	2 cut(s)	122, 123
Bsa29I	ATCGAT	1 cut(s)	364
BsaI	GGTCTC	2 cut(s)	281, 1465
BsaJI	CCNNGG	3 cut(s)	121, 441, 491
BsaWI	WCCGGW	2 cut(s)	1240, 1516
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
Bse1I	ACTGG	2 cut(s)	668, 1391
Bse3DI	GCAATG	3 cut(s)	309, 907, 1487
BseAI	TCCGGA	1 cut(s)	1240
BseBI	CCWGG	2 cut(s)	588, 1250
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	121, 441, 491
BseGI	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BseLI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
BseMI	GCAATG	3 cut(s)	309, 907, 1487
BseMII	CTCAG	5 cut(s)	201, 538, 903, 1121, 1230
BseNI	ACTGG	2 cut(s)	668, 1391
BseRI	GAGGAG	3 cut(s)	1112, 1462, 1465
BseSI	GKGCMC	2 cut(s)	441, 510
BseXI	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	301, 1315, 1353
BshNI	GGYRCC	1 cut(s)	505
BshVI	ATCGAT	1 cut(s)	364
BsiHKAI	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
BsiHKCI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
BsiSI	CCGG	3 cut(s)	122, 1241, 1517
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
BsmAI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	1194
BsnI	GGCC	3 cut(s)	301, 1315, 1353
Bso31I	GGTCTC	2 cut(s)	281, 1465
BsoBI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
Bsp1286I	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
Bsp13I	TCCGGA	1 cut(s)	1240
Bsp143I	GATC	4 cut(s)	470, 748, 784, 1285
Bsp68I	TCGCGA	1 cut(s)	475
BspACI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
BspANI	GGCC	3 cut(s)	301, 1315, 1353
BspCNI	CTCAG	5 cut(s)	200, 537, 904, 1120, 1229
BspDI	ATCGAT	1 cut(s)	364
BspEI	TCCGGA	1 cut(s)	1240
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	264, 507
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	2 cut(s)	478, 792
BspQI	GCTCTTC	2 cut(s)	950, 1450
BspT107I	GGYRCC	1 cut(s)	505
BspTI	CTTAAG	1 cut(s)	1300
BspTNI	GGTCTC	2 cut(s)	281, 1465
BsrDI	GCAATG	3 cut(s)	309, 907, 1487
BsrI	ACTGG	2 cut(s)	668, 1391
BssECI	CCNNGG	3 cut(s)	121, 441, 491
BssMI	GATC	4 cut(s)	470, 748, 784, 1285
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	588, 1250
Bst6I	CTCTTC	4 cut(s)	246, 252, 950, 1450
BstAFI	CTTAAG	1 cut(s)	1300
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	7 cut(s)	175, 217, 1064, 1068, 1120, 1213, 1363
BstDEI	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
BstENI	CCTNNNNNAGG	1 cut(s)	1203
BstF5I	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	473, 751, 787, 1288
BstMAI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BstMBI	GATC	4 cut(s)	470, 748, 784, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
BstNI	CCWGG	2 cut(s)	588, 1250
BstNSI	RCATGY	2 cut(s)	578, 1066
BstSCI	CCNGG	4 cut(s)	120, 121, 586, 1248
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	2 cut(s)	441, 510
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BstV2I	GAAGAC	2 cut(s)	946, 1251
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	2 cut(s)	718, 797
BstYI	RGATCY	1 cut(s)	784
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	301, 1315, 1353
BsuTUI	ATCGAT	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	601
BtsCI	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BtuMI	TCGCGA	1 cut(s)	475
Cac8I	GCNNGC	7 cut(s)	175, 217, 1064, 1068, 1120, 1213, 1363
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	263, 1025
Cfr9I	CCCGGG	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	7 cut(s)	575, 595, 662, 712, 932, 982, 1063
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
DpnI	GATC	4 cut(s)	472, 750, 786, 1287
DpnII	GATC	4 cut(s)	470, 748, 784, 1285
DriI	GACNNNNNGTC	1 cut(s)	947
EaeI	YGGCCR	1 cut(s)	1351
Eam1104I	CTCTTC	4 cut(s)	246, 252, 950, 1450
Eam1105I	GACNNNNNGTC	1 cut(s)	947
EarI	CTCTTC	4 cut(s)	246, 252, 950, 1450
EciI	GGCGGA	1 cut(s)	1052
Ecl136II	GAGCTC	2 cut(s)	1102, 1211
Eco130I	CCWWGG	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	1104, 1213
Eco31I	GGTCTC	2 cut(s)	281, 1465
Eco47I	GGWCC	2 cut(s)	263, 1025
Eco53kI	GAGCTC	2 cut(s)	1102, 1211
Eco57I	CTGAAG	3 cut(s)	676, 1128, 1173
Eco88I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
EcoICRI	GAGCTC	2 cut(s)	1102, 1211
EcoNI	CCTNNNNNAGG	1 cut(s)	1203
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	586, 1248
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	1104, 1213
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	7 cut(s)	574, 594, 661, 711, 931, 981, 1062
FauI	CCCGC	1 cut(s)	1115
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
FokI	GGATG	5 cut(s)	416, 565, 730, 846, 1139
FriOI	GRGCYC	2 cut(s)	1104, 1213
Fsp4HI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
FspBI	CTAG	2 cut(s)	531, 758
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	301, 1315, 1353
HapII	CCGG	3 cut(s)	122, 1241, 1517
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HindIII	AAGCTT	2 cut(s)	478, 853
HinfI	GANTC	8 cut(s)	281, 361, 366, 591, 845, 948, 1148, 1224
HpaII	CCGG	3 cut(s)	122, 1241, 1517
HphI	GGTGA	6 cut(s)	90, 421, 576, 715, 917, 1106
Hpy166II	GTNNAC	1 cut(s)	908
Hpy188I	TCNGA	9 cut(s)	141, 190, 286, 501, 544, 850, 877, 1147, 1153
Hpy188III	TCNNGA	9 cut(s)	370, 474, 891, 952, 995, 1135, 1241, 1289, 1468
Hpy8I	GTNNAC	1 cut(s)	908
HpyAV	CCTTC	7 cut(s)	24, 339, 425, 496, 700, 1152, 1384
HpyCH4IV	ACGT	1 cut(s)	1495
HpyCH4V	TGCA	5 cut(s)	341, 578, 736, 1070, 1480
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
HpyF3I	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
HpySE526I	ACGT	1 cut(s)	1495
Hsp92II	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
HspAI	GCGC	1 cut(s)	521
Kpn2I	TCCGGA	1 cut(s)	1240
Kzo9I	GATC	4 cut(s)	470, 748, 784, 1285
LguI	GCTCTTC	2 cut(s)	950, 1450
LmnI	GCTCC	4 cut(s)	455, 1039, 1099, 1208
Lsp1109I	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
LweI	GCATC	2 cut(s)	587, 1128
MaeI	CTAG	2 cut(s)	531, 758
MaeII	ACGT	1 cut(s)	1495
MaeIII	GTNAC	2 cut(s)	96, 418
MalI	GATC	4 cut(s)	472, 750, 786, 1287
MboI	GATC	4 cut(s)	470, 748, 784, 1285
MfeI	CAATTG	1 cut(s)	1347
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
MlsI	TGGCCA	1 cut(s)	1353
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	1 cut(s)	957
MmeI	TCCRAC	2 cut(s)	916, 1302
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	1240
MroXI	GAANNNNTTC	2 cut(s)	365, 538
MscI	TGGCCA	1 cut(s)	1353
MseI	TTAA	4 cut(s)	923, 1301, 1337, 1524
MslI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
Msp20I	TGGCCA	1 cut(s)	1353
MspA1I	CMGCKG	3 cut(s)	743, 770, 1122
MspCI	CTTAAG	1 cut(s)	1300
MspI	CCGG	3 cut(s)	122, 1241, 1517
MspR9I	CCNGG	4 cut(s)	122, 123, 588, 1250
MunI	CAATTG	1 cut(s)	1347
Mva1269I	GAATGC	1 cut(s)	1194
MvaI	CCWGG	2 cut(s)	588, 1250
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
NciI	CCSGG	2 cut(s)	122, 123
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	470, 748, 784, 1285
NlaIII	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
NlaIV	GGNNCC	2 cut(s)	264, 507
NmuCI	GTSAC	2 cut(s)	96, 418
NruI	TCGCGA	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	2 cut(s)	578, 1066
OliI	CACNNNNGTG	2 cut(s)	758, 1403
PaeI	GCATGC	1 cut(s)	1066
PaeR7I	CTCGAG	2 cut(s)	295, 1401
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	2 cut(s)	950, 1450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	1 cut(s)	1194
PdmI	GAANNNNTTC	2 cut(s)	365, 538
PfeI	GAWTC	7 cut(s)	281, 361, 366, 591, 845, 1148, 1224
PkrI	GCNGC	9 cut(s)	308, 745, 772, 808, 811, 1314, 1360, 1396, 1432
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PpuMI	RGGWCCY	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	725
Psp124BI	GAGCTC	2 cut(s)	1104, 1213
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	586, 1248
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	2 cut(s)	586, 1248
PspN4I	GGNNCC	2 cut(s)	264, 507
PspPI	GGNCC	2 cut(s)	263, 1025
PspPPI	RGGWCCY	1 cut(s)	263
PspXI	VCTCGAGB	2 cut(s)	295, 1401
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	743
RruI	TCGCGA	1 cut(s)	475
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
SacI	GAGCTC	2 cut(s)	1104, 1213
SapI	GCTCTTC	2 cut(s)	950, 1450
SaqAI	TTAA	4 cut(s)	923, 1301, 1337, 1524
SatI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
Sau3AI	GATC	4 cut(s)	470, 748, 784, 1285
Sau96I	GGNCC	2 cut(s)	263, 1025
SchI	GAGTC	1 cut(s)	957
ScrFI	CCNGG	4 cut(s)	122, 123, 588, 1250
SduI	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
SfaNI	GCATC	2 cut(s)	587, 1128
SfcI	CTRYAG	1 cut(s)	1068
Sfr274I	CTCGAG	2 cut(s)	295, 1401
SinI	GGWCC	2 cut(s)	263, 1025
SlaI	CTCGAG	2 cut(s)	295, 1401
SmaI	CCCGGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
SmlI	CTYRAG	5 cut(s)	203, 295, 1300, 1401, 1468
SmoI	CTYRAG	5 cut(s)	203, 295, 1300, 1401, 1468
SpeI	ACTAGT	1 cut(s)	757
SphI	GCATGC	1 cut(s)	1066
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
SspI	AATATT	2 cut(s)	108, 134
SspMI	CTAG	2 cut(s)	531, 758
SstI	GAGCTC	2 cut(s)	1104, 1213
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	4 cut(s)	120, 121, 586, 1248
StyI	CCWWGG	1 cut(s)	491
TaiI	ACGT	1 cut(s)	1498
TaqI	TCGA	4 cut(s)	296, 364, 951, 1402
TauI	GCSGC	4 cut(s)	309, 773, 1315, 1361
TfiI	GAWTC	7 cut(s)	281, 361, 366, 591, 845, 1148, 1224
Tru1I	TTAA	4 cut(s)	923, 1301, 1337, 1524
Tru9I	TTAA	4 cut(s)	923, 1301, 1337, 1524
TseFI	GTSAC	2 cut(s)	96, 418
TseI	GCWGC	5 cut(s)	743, 806, 809, 1394, 1430
Tsp45I	GTSAC	2 cut(s)	96, 418
TspDTI	ATGAA	5 cut(s)	66, 367, 894, 1431, 1505
TspGWI	ACGGA	1 cut(s)	860
TspMI	CCCGGG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	1300
VpaK11BI	GGWCC	2 cut(s)	263, 1025
XagI	CCTNNNNNAGG	1 cut(s)	1203
XapI	RAATTY	4 cut(s)	116, 373, 446, 728
XceI	RCATGY	2 cut(s)	578, 1066
XhoI	CTCGAG	2 cut(s)	295, 1401
XmaI	CCCGGG	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	365, 538
XspI	CTAG	2 cut(s)	531, 758
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.