Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012487

Physical Location & Seq

Genomic Coordinates Forward (+)

4934295 .. 4935551

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCAAAGTTTTGCAAATTATCAGAAGAAATGAACGTACAACTCCTGACAAGATTGCCTCCTAAAGCTTTGATGCGATTCAAATGTGTTTGTAGGTCGTTGTGCAATCTAATTAATAGTCCAAGCTTCGTGGCCAAGAACCTTTCTAATTCCTTGAACAACAAATTCGCTTCCTCCACTAGCATCCTTTTTAAGCGTACTGTCCTTAAAGACAATACCAAAGACAATACCATTGTAGATAAGAGAGAAATTTTTTATATACTGAGGGACGGCAACAATGAAAAGAAGGAAGTGTTGCTTTCATTACTTAGTTTGTGCAACCATGATCATAGTGAAGACCAAAACCTTTGTTCTGTTGTTGAGGACCTTAATCTTCCTTTTCCTATGGGTATAAATCCCTTTAGTCTAAAAATTGCTGGTCACTGTGACGGGATTGTTTGTCTTACTTCCGAAGAGCATGTTGTTCTATGCAATCCAGCAATCAAGGAATTCAAATTTCTTCCCAAATCTTGTCTTCTTCTCCCTCCCAAACATCCAGATGATTATGATAATATAGATGATTATCATGAAGCATTAGAATCAGAACCGAAGGCTGTGGGATTTGGTTATGATTCTGGAGGTGAAGTTTACAAGGTTGTTAGAATAGTACAATTTTCGTCAGGGTACGTGTTTACTTCACATCCTTCAAGAGCGGAGGTATACACCTTGGGTTCTCATTCTTGGAGAGAGATTAACATGGCTACAGACACTTCTATCATGTGGACTCCTTCTTTTGAAATATACTTTAAGGGATTCTTTTATTGGAATGGATATATTTATCCTACTCCAGGCAAGGCTAAGGATGTTATCCTTTCATTTGATATGGGTGCCGAGACATTTCATGAGATATCAATTCCAGAGAGTATCTCTATCTATTCGGGAGTTCTTACGAGCCTTGCTGTGTGGAAAGAATCCATTGTCCTTATTGCATATAAAGACATTGATTCTAAATACTTGGATATATGGGTGATGGGTGATTATGATGGTTTTAGAAATACATGGATAAAACAGTTATCTATCGGACTTATAGAAGGTGACATGCCATTAGTCTTTTGGAGAAGTGACGAGGTTCTTATGGTTGCTGTTGATGGACGTGTAGTCTCATATAATCTTACTACCCAAATGCTTAAATATTTTCCAATATATGGCGTAGAAGATCATGAATCTATTCAAGCAGTTGTTTATGTAAATAGTATTATTTCACTAGGGAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006643 GO:0006664 GO:0006790 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009941 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031975 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046505 GO:0046506 GO:0050896 GO:0051716 GO:0070085 GO:0071496 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

418

Amino Acids

47.48

Weight (kDa)

5.45

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	103 - 351	1.9e-22	F-box associated beta propeller domain
FBA_1	PF07734	133 - 383	2.7e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01220 AT5G01220
fragaria_vesca	FvH4_6g11930
malus_domestica	MD04G1148000.v1.1 MD12G1161400.v1.1
prunus_persica	Prupe.6G271800_v2.0.a1
pyrus_communis	pycom04g13380 pycom12g15320
rosa_chinensis	RchiOBHm_Chr3g0463701
rosa_laevigata	RLG00000024763
rosa_multiflora	Rmu_sc0003267.1_g000033
rosa_roxburghii	Rroxscaffold_6G00416360
rosa_rugosa	Rorug03G0067000 Rorug03G0067100
rosa_samantha	Rh3AG124100 Rh3BG128700 Rh3CG130900 Rh3DG129300
rosa_wichuraiana	Rw3G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	4 cut(s)	164, 249, 488, 494
AfaI	GTAC	4 cut(s)	39, 199, 648, 665
AfiI	CCNNNNNNNGG	2 cut(s)	827, 1184
AflIII	ACRYGT	2 cut(s)	666, 1132
AgsI	TTSAA	6 cut(s)	82, 157, 493, 687, 776, 1211
AhdI	GACNNNNNGTC	1 cut(s)	1136
AjiI	CACGTC	1 cut(s)	1133
AjnI	CCWGG	1 cut(s)	826
AluBI	AGCT	2 cut(s)	68, 126
AluI	AGCT	2 cut(s)	68, 126
Alw26I	GTCTC	3 cut(s)	866, 1144, 1243
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	4 cut(s)	164, 249, 488, 494
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	1206
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	632, 1018, 1025, 1085
AvaII	GGWCC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	866
BbsI	GAAGAC	2 cut(s)	342, 506
BccI	CCATC	3 cut(s)	1003, 1016, 1121
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	828
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	3 cut(s)	866, 1144, 1243
BfaI	CTAG	2 cut(s)	180, 1244
BfmI	CTRYAG	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	364
BmeRI	GACNNNNNGTC	1 cut(s)	1136
BmgBI	CACGTC	1 cut(s)	1133
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	2 cut(s)	63, 192
BpiI	GAAGAC	2 cut(s)	342, 506
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BpmI	CTGGAG	2 cut(s)	636, 810
Bpu10I	CCTNAGC	1 cut(s)	837
BsaAI	YACGTR	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 1184
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	4 cut(s)	183, 532, 679, 847
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	827, 1184
BseMII	CTCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	866
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	827, 1184
BsmAI	GTCTC	3 cut(s)	866, 1144, 1243
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	325, 1195
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	3 cut(s)	565, 880, 1198
BspLI	GGNNCC	1 cut(s)	868
BspQI	GCTCTTC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	866
BsrBI	CCGCTC	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	2 cut(s)	325, 1195
BssNAI	GTATAC	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	3 cut(s)	202, 425, 1050
Bst6I	CTCTTC	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	263, 308, 837
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	4 cut(s)	183, 532, 679, 847
BstKTI	GATC	2 cut(s)	328, 1198
BstMAI	GTCTC	3 cut(s)	866, 1144, 1243
BstMBI	GATC	2 cut(s)	325, 1195
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	2 cut(s)	461, 1081
BstSCI	CCNGG	1 cut(s)	826
BstSFI	CTRYAG	1 cut(s)	741
BstV2I	GAAGAC	2 cut(s)	342, 506
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	1133
BtsCI	GGATG	4 cut(s)	183, 532, 679, 847
BtsIMutI	CAGTG	1 cut(s)	421
CciI	TCATGA	3 cut(s)	565, 880, 1198
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	4 cut(s)	38, 198, 647, 664
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	9 cut(s)	323, 458, 566, 736, 757, 881, 1038, 1078, 1199
CviJI	RGCY	7 cut(s)	68, 126, 134, 593, 740, 836, 933
CviKI_1	RGCY	7 cut(s)	68, 126, 134, 593, 740, 836, 933
CviQI	GTAC	4 cut(s)	38, 198, 647, 664
DdeI	CTNAG	3 cut(s)	263, 308, 837
DpnI	GATC	2 cut(s)	327, 1197
DpnII	GATC	2 cut(s)	325, 1195
DriI	GACNNNNNGTC	1 cut(s)	1136
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	447
Eam1105I	GACNNNNNGTC	1 cut(s)	1136
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	888
Eco47I	GGWCC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	826
EcoRV	GATATC	1 cut(s)	888
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	9 cut(s)	326, 461, 569, 739, 760, 884, 1041, 1081, 1202
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 779, 811
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	9 cut(s)	322, 457, 565, 735, 756, 880, 1037, 1077, 1198
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	699
FokI	GGATG	4 cut(s)	170, 519, 666, 854
FspBI	CTAG	2 cut(s)	180, 1244
GsuI	CTGGAG	2 cut(s)	636, 810
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	9 cut(s)	326, 461, 569, 739, 760, 884, 1041, 1081, 1202
HindIII	AAGCTT	2 cut(s)	66, 124
HinfI	GANTC	8 cut(s)	78, 578, 611, 763, 792, 950, 983, 1202
HphI	GGTGA	4 cut(s)	632, 1018, 1025, 1085
Hpy166II	GTNNAC	4 cut(s)	628, 672, 700, 762
Hpy188I	TCNGA	4 cut(s)	25, 451, 583, 1061
Hpy188III	TCNNGA	9 cut(s)	46, 536, 566, 615, 687, 881, 896, 918, 1199
Hpy8I	GTNNAC	4 cut(s)	628, 672, 700, 762
HpyAV	CCTTC	5 cut(s)	280, 583, 693, 777, 1064
HpyCH4III	ACNGT	3 cut(s)	202, 425, 1050
HpyCH4IV	ACGT	3 cut(s)	36, 666, 1132
HpyCH4V	TGCA	5 cut(s)	15, 105, 318, 471, 968
HpyF3I	CTNAG	3 cut(s)	263, 308, 837
HpySE526I	ACGT	3 cut(s)	36, 666, 1132
Hsp92II	CATG	9 cut(s)	326, 461, 569, 739, 760, 884, 1041, 1081, 1202
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	325, 1195
LguI	GCTCTTC	1 cut(s)	447
LpnPI	CCDG	9 cut(s)	59, 402, 489, 549, 600, 645, 813, 840, 909
LweI	GCATC	2 cut(s)	63, 192
MaeI	CTAG	2 cut(s)	180, 1244
MaeII	ACGT	3 cut(s)	36, 666, 1132
MaeIII	GTNAC	4 cut(s)	419, 425, 1073, 1100
MalI	GATC	2 cut(s)	327, 1197
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	2 cut(s)	325, 1195
MboII	GAAGA	8 cut(s)	38, 347, 365, 464, 491, 506, 509, 1205
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	8 cut(s)	69, 184, 258, 355, 534, 611, 688, 1099
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	1206
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	7 cut(s)	114, 192, 207, 369, 732, 786, 1167
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	828
NdeII	GATC	2 cut(s)	325, 1195
NlaIII	CATG	9 cut(s)	326, 461, 569, 739, 760, 884, 1041, 1081, 1202
NlaIV	GGNNCC	1 cut(s)	868
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	4 cut(s)	419, 425, 1073, 1100
NspI	RCATGY	2 cut(s)	461, 1081
PagI	TCATGA	3 cut(s)	565, 880, 1198
PciSI	GCTCTTC	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	1206
PfeI	GAWTC	7 cut(s)	78, 578, 611, 792, 950, 983, 1202
PflMI	CCANNNNNTGG	1 cut(s)	1184
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
Ppu21I	YACGTR	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	1 cut(s)	364
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	4 cut(s)	39, 199, 648, 665
RsaNI	GTAC	4 cut(s)	38, 198, 647, 664
RseI	CAYNNNNRTG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	7 cut(s)	114, 192, 207, 369, 732, 786, 1167
Sau3AI	GATC	2 cut(s)	325, 1195
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	63, 192
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	537
SsiI	CCGC	1 cut(s)	692
SspI	AATATT	1 cut(s)	1172
SspMI	CTAG	2 cut(s)	180, 1244
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	3 cut(s)	202, 425, 1050
TaiI	ACGT	3 cut(s)	39, 669, 1135
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	7 cut(s)	78, 578, 611, 792, 950, 983, 1202
Tru1I	TTAA	7 cut(s)	114, 192, 207, 369, 732, 786, 1167
Tru9I	TTAA	7 cut(s)	114, 192, 207, 369, 732, 786, 1167
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	4 cut(s)	419, 425, 1073, 1100
Tsp45I	GTSAC	4 cut(s)	419, 425, 1073, 1100
TspDTI	ATGAA	7 cut(s)	47, 291, 294, 582, 843, 869, 1215
TspRI	CASTG	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	1184
VpaK11BI	GGWCC	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	4 cut(s)	164, 249, 488, 494
XceI	RCATGY	2 cut(s)	461, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1089
XmiI	GTMKAC	1 cut(s)	699
XmnI	GAANNNNTTC	1 cut(s)	1206
XspI	CTAG	2 cut(s)	180, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.