Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012487

Physical Location & Seq

Genomic Coordinates Forward (+)

4982155 .. 4983535

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGACAGAGTTTTGCAAAATGCAAGAAGAAGCATTGGTGGCGCAAATTCTATCAAGGTTGCCTCCCAGATCTCTAATGCGATTCAAATGCATCCGTAAGTCATGGCATGCACTCATCAATAGCCCTTGGTTTGCATCCCAACACCTCCAAGTGTACAACAAACTCTCCTCCTCTACTCGAATCCTATTGAAGCGTTGCGTCCGCATTAGAACCGAAGCTAACAAGGAGGAAATTGTGTTCTCATTTCTTAATCTTCCTAATAATGCCGGTGACCACGAAAACAATAATTTTCCTTGTGTTGTTGAGGACCTCGTTTTTCCACCTTCTTTGGGTTTACAGACTAGGGACCAATATATTGAGCTCCCTGGTGGTGATAGCACTGTACATATTGTAGGTCATTGTGATGGGATAATTTGTCTGAATCTTTATACCGGCAACCTTGTTTTATACAATCCAGCAAACAAGGAATTGAAAATTCTTCCGAAACCATGCCTTCCGCTTGAAGATAAAGATACATTTATAACTGTTCTGGGATTTGGCTATGATTCCAAATCTAATGATTACATACTTGTTAACATTGCTGTTTATGGTGAGGAACTCTTAGGAGACTACGAGAATACCATTCTTCATATTCCCAAGGCAGAAATGTACACACTAGGTACTGATTCTTGGAAAGAGATCCAGACTGATTATCTAGAAACCGGAAGCGCAATCTTTTGGCCTACTGATTTCGAGATGTACTTCCAGGGAAATATTTATTGGTTGGGATATGAGGGAAAGAAGGAATTCGGCTCTCAAATTGGTGAATATAATGGGAAATTTGAGCGTATGATCATTTTGTTTGATACGAGTGTTGAGGCTCTTTGTACTATGTTGCTTCCGGATAGCTTCTACGAGCCAGGGCACCAATCATATGGTTACACCGCGAACGCGCACCTTGCAATATGGCATGACACCATTGCTGTTTTTGGTTTTCATCTTTACCTCGAGTCATTTCACTTATGGGTAATGGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006643 GO:0006664 GO:0006790 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009941 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031975 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046505 GO:0046506 GO:0050896 GO:0051716 GO:0070085 GO:0071496 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

339

Amino Acids

38.95

Weight (kDa)

5.03

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	116 - 339	4.1e-10	F-box associated beta propeller domain
FBA_1	PF07734	125 - 295	3.8e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01220 AT5G01220
fragaria_vesca	FvH4_6g11930
malus_domestica	MD04G1148000.v1.1 MD12G1161400.v1.1
prunus_persica	Prupe.6G271800_v2.0.a1
pyrus_communis	pycom04g13380 pycom12g15320
rosa_chinensis	RchiOBHm_Chr3g0463701
rosa_laevigata	RLG00000024763
rosa_multiflora	Rmu_sc0003267.1_g000033
rosa_roxburghii	Rroxscaffold_6G00416360
rosa_rugosa	Rorug03G0067000 Rorug03G0067100
rosa_samantha	Rh3AG124100 Rh3BG128700 Rh3CG130900 Rh3DG129300
rosa_wichuraiana	Rw3G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	903
AccII	CGCG	2 cut(s)	926, 932
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	3 cut(s)	202, 497, 924
AclWI	GGATC	1 cut(s)	673
AcsI	RAATTY	4 cut(s)	45, 474, 785, 818
AfaI	GTAC	6 cut(s)	155, 384, 650, 661, 740, 868
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	85, 190, 472, 503
AjnI	CCWGG	3 cut(s)	364, 744, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	218, 361, 888
AluI	AGCT	3 cut(s)	218, 361, 888
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	986
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	1 cut(s)	719
ApoI	RAATTY	4 cut(s)	45, 474, 785, 818
Asp700I	GAANNNNTTC	1 cut(s)	785
AspLEI	GCGC	3 cut(s)	43, 710, 934
AspS9I	GGNCC	2 cut(s)	307, 346
AsuHPI	GGTGA	4 cut(s)	281, 383, 602, 815
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	2 cut(s)	307, 346
BaeGI	GKGCMC	1 cut(s)	906
BaeI	ACNNNNGTAYC	2 cut(s)	837, 870
BanI	GGYRCC	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	3 cut(s)	366, 746, 900
BclI	TGATCA	1 cut(s)	831
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	4 cut(s)	342, 656, 695, 1018
BglII	AGATCT	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	366, 746, 900
Bme18I	GGWCC	2 cut(s)	307, 346
BmeT110I	CYCGRG	1 cut(s)	986
BmgT120I	GGNCC	2 cut(s)	307, 346
BmiI	GGNNCC	2 cut(s)	347, 905
BmrFI	CCNGG	3 cut(s)	366, 746, 900
BmsI	GCATC	2 cut(s)	99, 143
BsaJI	CCNNGG	5 cut(s)	125, 364, 636, 745, 899
BsaWI	WCCGGW	2 cut(s)	701, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	2 cut(s)	266, 431
Bse3DI	GCAATG	2 cut(s)	576, 957
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	3 cut(s)	366, 746, 900
BseDI	CCNNGG	5 cut(s)	125, 364, 636, 745, 899
BseGI	GGATG	3 cut(s)	90, 134, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	2 cut(s)	576, 957
BseRI	GAGGAG	2 cut(s)	157, 160
BseSI	GKGCMC	1 cut(s)	906
Bsh1236I	CGCG	2 cut(s)	926, 932
BshFI	GGCC	1 cut(s)	721
BshNI	GGYRCC	1 cut(s)	903
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	4 cut(s)	267, 432, 702, 881
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	363, 906
Bsp13I	TCCGGA	1 cut(s)	880
Bsp1407I	TGTACA	3 cut(s)	153, 382, 648
Bsp143I	GATC	3 cut(s)	68, 678, 831
BspACI	CCGC	3 cut(s)	202, 497, 924
BspANI	GGCC	1 cut(s)	721
BspEI	TCCGGA	1 cut(s)	880
BspFNI	CGCG	2 cut(s)	926, 932
BspLI	GGNNCC	2 cut(s)	347, 905
BspPI	GGATC	1 cut(s)	673
BspT107I	GGYRCC	1 cut(s)	903
BsrDI	GCAATG	2 cut(s)	576, 957
BsrFI	RCCGGY	2 cut(s)	266, 431
BsrGI	TGTACA	3 cut(s)	153, 382, 648
BssAI	RCCGGY	2 cut(s)	266, 431
BssECI	CCNNGG	5 cut(s)	125, 364, 636, 745, 899
BssMI	GATC	3 cut(s)	68, 678, 831
BssT1I	CCWWGG	2 cut(s)	125, 636
Bst2UI	CCWGG	3 cut(s)	366, 746, 900
Bst4CI	ACNGT	2 cut(s)	382, 526
BstAUI	TGTACA	3 cut(s)	153, 382, 648
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	601
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	90, 134, 1018
BstFNI	CGCG	2 cut(s)	926, 932
BstHHI	GCGC	3 cut(s)	43, 710, 934
BstKTI	GATC	3 cut(s)	71, 681, 834
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	3 cut(s)	68, 678, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 938
BstNI	CCWGG	3 cut(s)	366, 746, 900
BstNSI	RCATGY	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	364, 744, 898
BstSLI	GKGCMC	1 cut(s)	906
BstUI	CGCG	2 cut(s)	926, 932
BstX2I	RGATCY	2 cut(s)	68, 678
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	2 cut(s)	68, 678
BsuRI	GGCC	1 cut(s)	721
BtsCI	GGATG	3 cut(s)	90, 134, 1018
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	3 cut(s)	43, 710, 934
Cfr10I	RCCGGY	2 cut(s)	266, 431
Cfr13I	GGNCC	2 cut(s)	307, 346
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	6 cut(s)	154, 383, 649, 660, 739, 867
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	4 cut(s)	102, 107, 489, 950
CviJI	RGCY	9 cut(s)	123, 218, 361, 540, 721, 792, 860, 888, 898
CviKI_1	RGCY	9 cut(s)	123, 218, 361, 540, 721, 792, 860, 888, 898
CviQI	GTAC	6 cut(s)	154, 383, 649, 660, 739, 867
DdeI	CTNAG	1 cut(s)	601
DpnI	GATC	3 cut(s)	70, 680, 833
DpnII	GATC	3 cut(s)	68, 678, 831
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	125, 636
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	307, 346
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	986
Eco91I	GGTNACC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	3 cut(s)	364, 744, 898
EcoT14I	CCWWGG	2 cut(s)	125, 636
EcoT22I	ATGCAT	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	125, 636
FaeI	CATG	4 cut(s)	105, 110, 492, 953
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	4 cut(s)	101, 106, 488, 949
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	1 cut(s)	831
FokI	GGATG	2 cut(s)	77, 121
FriOI	GRGCYC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	342, 656, 695, 1018
GlaI	GCGC	3 cut(s)	42, 709, 933
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	4 cut(s)	267, 432, 702, 881
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	3 cut(s)	43, 710, 934
Hin1II	CATG	4 cut(s)	105, 110, 492, 953
Hin6I	GCGC	3 cut(s)	41, 708, 932
HinP1I	GCGC	3 cut(s)	41, 708, 932
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	6 cut(s)	81, 180, 421, 545, 665, 989
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	4 cut(s)	267, 432, 702, 881
HphI	GGTGA	4 cut(s)	281, 383, 602, 815
Hpy166II	GTNNAC	4 cut(s)	154, 335, 574, 651
Hpy188I	TCNGA	2 cut(s)	420, 483
Hpy188III	TCNNGA	4 cut(s)	682, 695, 733, 881
Hpy8I	GTNNAC	4 cut(s)	154, 335, 574, 651
HpyAV	CCTTC	3 cut(s)	333, 503, 775
HpyCH4III	ACNGT	2 cut(s)	382, 526
HpyCH4V	TGCA	6 cut(s)	15, 22, 90, 110, 134, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 938
HpyF3I	CTNAG	1 cut(s)	601
Hsp92II	CATG	4 cut(s)	105, 110, 492, 953
HspAI	GCGC	3 cut(s)	41, 708, 932
Kpn2I	TCCGGA	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	831
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	68, 678, 831
LmnI	GCTCC	1 cut(s)	366
LweI	GCATC	2 cut(s)	99, 143
MaeI	CTAG	4 cut(s)	342, 656, 695, 1018
MaeIII	GTNAC	2 cut(s)	269, 917
MalI	GATC	3 cut(s)	70, 680, 833
MboI	GATC	3 cut(s)	68, 678, 831
MboII	GAAGA	5 cut(s)	38, 245, 470, 515, 617
MflI	RGATCY	2 cut(s)	68, 678
MhlI	GDGCHC	2 cut(s)	363, 906
MluCI	AATT	9 cut(s)	45, 231, 286, 411, 467, 474, 785, 798, 818
MlyI	GAGTC	1 cut(s)	998
Mph1103I	ATGCAT	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	785
MseI	TTAA	2 cut(s)	249, 573
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	4 cut(s)	267, 432, 702, 881
MspR9I	CCNGG	3 cut(s)	366, 746, 900
MvaI	CCWGG	3 cut(s)	366, 746, 900
MvnI	CGCG	2 cut(s)	926, 932
MwoI	GCNNNNNNNGC	2 cut(s)	38, 938
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	3 cut(s)	68, 678, 831
NlaIII	CATG	4 cut(s)	105, 110, 492, 953
NlaIV	GGNNCC	2 cut(s)	347, 905
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	92
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	5 cut(s)	81, 180, 421, 545, 665
PleI	GAGTC	1 cut(s)	997
PpsI	GAGTC	1 cut(s)	997
PpuMI	RGGWCCY	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	3 cut(s)	364, 744, 898
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	364, 744, 898
PspN4I	GGNNCC	2 cut(s)	347, 905
PspPI	GGNCC	2 cut(s)	307, 346
PspPPI	RGGWCCY	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	986
PsuI	RGATCY	2 cut(s)	68, 678
RsaI	GTAC	6 cut(s)	155, 384, 650, 661, 740, 868
RsaNI	GTAC	6 cut(s)	154, 383, 649, 660, 739, 867
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	249, 573
Sau3AI	GATC	3 cut(s)	68, 678, 831
Sau96I	GGNCC	2 cut(s)	307, 346
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	3 cut(s)	366, 746, 900
SduI	GDGCHC	2 cut(s)	363, 906
SfaNI	GCATC	2 cut(s)	99, 143
Sfr274I	CTCGAG	1 cut(s)	986
SinI	GGWCC	2 cut(s)	307, 346
SlaI	CTCGAG	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	9 cut(s)	45, 231, 286, 411, 467, 474, 785, 798, 818
SsiI	CCGC	3 cut(s)	202, 497, 924
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	4 cut(s)	342, 656, 695, 1018
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	364, 744, 898
StyI	CCWWGG	2 cut(s)	125, 636
TaaI	ACNGT	2 cut(s)	382, 526
TaqI	TCGA	3 cut(s)	178, 732, 987
TasI	AATT	9 cut(s)	45, 231, 286, 411, 467, 474, 785, 798, 818
TatI	WGTACW	5 cut(s)	153, 382, 648, 738, 866
TfiI	GAWTC	5 cut(s)	81, 180, 421, 545, 665
Tru1I	TTAA	2 cut(s)	249, 573
Tru9I	TTAA	2 cut(s)	249, 573
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	617, 965
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	307, 346
XapI	RAATTY	4 cut(s)	45, 474, 785, 818
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	986
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	4 cut(s)	342, 656, 695, 1018
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.