Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012487

Physical Location & Seq

Genomic Coordinates Forward (+)

10702896 .. 10707551

Gene Structure 4656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGCCCTCCTCTCCTTCTCTCTCTATAAATCCCTCTCTCTCTCCCCCCTCTCTCTCCACAGCCACTCCCACTTCTTCATCATCTTTTCCTCATTCGTCACCTCCAATATTCCTCAAATTCCCGGGCAACCAATATTCTCGGACAAAACCCATTAGCCTTTCTGCTCGTAAAGCTCGCTCGGGCTACTCAGAAAGTAGAAAACTTGAGGTTAGAGCAAGCAAGATGACGATTACAGAAGTTGAGATTGAAGAAGAGGAAGAGGGTCCTCCCCCTTATGTTGAATCGGAGACCAACTCGAGGCCTCGCCGCATTGCTCTGTTTGTTGAGCCTTCCCCTTTTGCATATGTGTCAGGGTATAAGAATCGATTCCAGAATTTCATTAGGTACTTGCGTGAAATGGGGGATGAGGTGATGGTTGTGACAACACACGAAGGAGTGCCCGAGGAATTTTATGGAGCAAAATGTATTGGATCGCGAAGCTTCCCCTGCCCTTGGTATCAGAAGGTGCCCCTTTCCCTTGCGCTCAGTCCTAGAATAATTTCAGAGGTTGCCCATTTCAAGCCTGACATCATACATGCATCCTCACCTGGAATCATGGTATTCGGTGCTCTCATCATCGCTAAATTATTGTCTGTCCCCATTGTGATGTCATACCATACTCATGTGCCAGTATATATTCCAAGATACACCTTCAGTTGGTTGGTGAAACCCATGTGGATGGTTATAAAATTCCTGCACACAGCTGCTGATCTCACACTAGTGCCATCAGCGGCAATCGCTAAGGATCTCCAAGTTGCTGGGGTCGCAGCAGCTAACACAATTCGTCTTTGGAATAAGGGTGTTGATTCAGAAAGCTTCCATCCTCGCTTCCGTTCTGATGAAATGCGTTCAAGACTAAGCAATGGTGAACCTGAGAAACCTTTAATAGTCCATGTTGGAAGACTTGGAGTCGAGAAGAGCTTGGATTTTCTAAAAAGTGTCATGGATAGGCTTCCAGAAGCACGAATTGCTTTTATTGGAGATGGACCATACAGGGCGGAGCTGGAAGAATTATTCTCTGGCATGCCTGCAGTATTTACAGGAATGTTAGGAGGTGAGGAGCTCTCTCAGGCGTATGCCAGCGGGGATGTTTTCGTGATGCCTTCAGAATCAGAGACACTTGGGCTTGTGGTATTGGAGGCTATGGCTTCAGGCATTCCTGTGGTAGGAGCTCGCTCAGGTGGAATCCCAGATATAATTCCGGAAGACCAGGAGGGGAAAACAGGATTTCTCTATAATTACAACGATCTTGATGACTGCTTAAGCAAATTGCGGCCTCTGTTGGAGAACAAGGAATTAAGGGAAACAATTGGCCAAGCCGCACGCAAAGAGACAGAGAAGTTTGACTGGAAGGCAGCCACTCGAGTGATACGAAATGAACAATACAATGCTGCCATTTGGTTTTGGAGGAGGAGAAGAGCACAATTCTTGAGACCTCTGCAATGGCTGATGAAACGTATCTTCCCACAAACCCCACCGGAAATTAAGTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006643 GO:0006664 GO:0006790 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009941 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031975 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046505 GO:0046506 GO:0050896 GO:0051716 GO:0070085 GO:0071496 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

511

Amino Acids

57.36

Weight (kDa)

8.7

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	118 - 284	9.8e-27	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	118 - 273	1.2e-16	Glycosyl transferase 4-like domain
Glycos_transf_1	PF00534	303 - 456	3.9e-28	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	307 - 443	1.1e-26	Glycosyl transferases group 1
Glyco_trans_1_2	PF13524	323 - 459	1.5e-10	Glycosyl transferase-like
GT4-conflict	PF20706	366 - 416	2.7e-07	Family 4 Glycosyltransferase in conflict systems

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01220 AT5G01220
fragaria_vesca	FvH4_6g11930
malus_domestica	MD04G1148000.v1.1 MD12G1161400.v1.1
prunus_persica	Prupe.6G271800_v2.0.a1
pyrus_communis	pycom04g13380 pycom12g15320
rosa_chinensis	RchiOBHm_Chr3g0463701
rosa_laevigata	RLG00000024763
rosa_multiflora	Rmu_sc0003267.1_g000033
rosa_roxburghii	Rroxscaffold_6G00416360
rosa_rugosa	Rorug03G0067000 Rorug03G0067100
rosa_samantha	Rh3AG124100 Rh3BG128700 Rh3CG130900 Rh3DG129300
rosa_wichuraiana	Rw3G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	1240
AciI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
AclWI	GGATC	2 cut(s)	478, 792
AcoI	YGGCCR	1 cut(s)	1351
AcsI	RAATTY	4 cut(s)	116, 373, 446, 728
AcuI	CTGAAG	3 cut(s)	676, 1128, 1173
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
AflII	CTTAAG	1 cut(s)	1300
AgsI	TTSAA	4 cut(s)	248, 281, 559, 891
AhdI	GACNNNNNGTC	1 cut(s)	947
AhlI	ACTAGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	586, 1248
AleI	CACNNNNGTG	2 cut(s)	758, 1403
AluBI	AGCT	9 cut(s)	173, 480, 743, 812, 855, 960, 1042, 1102, 1211
AluI	AGCT	9 cut(s)	173, 480, 743, 812, 855, 960, 1042, 1102, 1211
Alw21I	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
Alw26I	GTCTC	4 cut(s)	281, 1148, 1364, 1465
AlwI	GGATC	2 cut(s)	478, 792
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
Aor13HI	TCCGGA	1 cut(s)	1240
AoxI	GGCC	3 cut(s)	299, 1313, 1351
ApeKI	GCWGC	5 cut(s)	743, 806, 809, 1394, 1430
ApoI	RAATTY	4 cut(s)	116, 373, 446, 728
Asp700I	GAANNNNTTC	2 cut(s)	365, 538
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	263, 1025
AsuC2I	CCSGG	2 cut(s)	122, 123
AsuHPI	GGTGA	6 cut(s)	90, 421, 576, 715, 917, 1106
AvaI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
AvaII	GGWCC	2 cut(s)	263, 1025
BaeGI	GKGCMC	2 cut(s)	441, 510
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BalI	TGGCCA	1 cut(s)	1353
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	1104, 1213
BbsI	GAAGAC	2 cut(s)	946, 1251
Bbv12I	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
BbvI	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BccI	CCATC	5 cut(s)	406, 712, 772, 867, 1016
BciT130I	CCWGG	2 cut(s)	588, 1250
BcnI	CCSGG	2 cut(s)	122, 123
BcoDI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	531, 758
BfmI	CTRYAG	1 cut(s)	1068
BfrI	CTTAAG	1 cut(s)	1300
BisI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
BlsI	GCNGC	9 cut(s)	308, 745, 772, 808, 811, 1314, 1360, 1396, 1432
Bme1390I	CCNGG	4 cut(s)	122, 123, 588, 1250
Bme18I	GGWCC	2 cut(s)	263, 1025
BmeRI	GACNNNNNGTC	1 cut(s)	947
BmeT110I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
BmgT120I	GGNCC	2 cut(s)	263, 1025
BmiI	GGNNCC	2 cut(s)	264, 507
BmrFI	CCNGG	4 cut(s)	122, 123, 588, 1250
BmsI	GCATC	2 cut(s)	587, 1128
BpiI	GAAGAC	2 cut(s)	946, 1251
BplI	GAGNNNNNCTC	4 cut(s)	278, 310, 1088, 1120
Bpu10I	CCTNAGC	2 cut(s)	780, 1216
BpuEI	CTTGAG	2 cut(s)	224, 1489
BpuMI	CCSGG	2 cut(s)	122, 123
Bsa29I	ATCGAT	1 cut(s)	364
BsaI	GGTCTC	2 cut(s)	281, 1465
BsaJI	CCNNGG	3 cut(s)	121, 441, 491
BsaWI	WCCGGW	2 cut(s)	1240, 1516
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
Bse1I	ACTGG	2 cut(s)	668, 1391
Bse3DI	GCAATG	3 cut(s)	309, 907, 1487
BseAI	TCCGGA	1 cut(s)	1240
BseBI	CCWGG	2 cut(s)	588, 1250
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	121, 441, 491
BseGI	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BseLI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
BseMI	GCAATG	3 cut(s)	309, 907, 1487
BseMII	CTCAG	5 cut(s)	201, 538, 903, 1121, 1230
BseNI	ACTGG	2 cut(s)	668, 1391
BseRI	GAGGAG	3 cut(s)	1112, 1462, 1465
BseSI	GKGCMC	2 cut(s)	441, 510
BseXI	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	301, 1315, 1353
BshNI	GGYRCC	1 cut(s)	505
BshVI	ATCGAT	1 cut(s)	364
BsiHKAI	GWGCWC	4 cut(s)	610, 1104, 1213, 1462
BsiHKCI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
BsiSI	CCGG	3 cut(s)	122, 1241, 1517
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	4 cut(s)	297, 492, 696, 1205
BsmAI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	1194
BsnI	GGCC	3 cut(s)	301, 1315, 1353
Bso31I	GGTCTC	2 cut(s)	281, 1465
BsoBI	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
Bsp1286I	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
Bsp13I	TCCGGA	1 cut(s)	1240
Bsp143I	GATC	4 cut(s)	470, 748, 784, 1285
Bsp68I	TCGCGA	1 cut(s)	475
BspACI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
BspANI	GGCC	3 cut(s)	301, 1315, 1353
BspCNI	CTCAG	5 cut(s)	200, 537, 904, 1120, 1229
BspDI	ATCGAT	1 cut(s)	364
BspEI	TCCGGA	1 cut(s)	1240
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	264, 507
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	2 cut(s)	478, 792
BspQI	GCTCTTC	2 cut(s)	950, 1450
BspT107I	GGYRCC	1 cut(s)	505
BspTI	CTTAAG	1 cut(s)	1300
BspTNI	GGTCTC	2 cut(s)	281, 1465
BsrDI	GCAATG	3 cut(s)	309, 907, 1487
BsrI	ACTGG	2 cut(s)	668, 1391
BssECI	CCNNGG	3 cut(s)	121, 441, 491
BssMI	GATC	4 cut(s)	470, 748, 784, 1285
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	588, 1250
Bst6I	CTCTTC	4 cut(s)	246, 252, 950, 1450
BstAFI	CTTAAG	1 cut(s)	1300
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	7 cut(s)	175, 217, 1064, 1068, 1120, 1213, 1363
BstDEI	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
BstENI	CCTNNNNNAGG	1 cut(s)	1203
BstF5I	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	473, 751, 787, 1288
BstMAI	GTCTC	4 cut(s)	281, 1148, 1364, 1465
BstMBI	GATC	4 cut(s)	470, 748, 784, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
BstNI	CCWGG	2 cut(s)	588, 1250
BstNSI	RCATGY	2 cut(s)	578, 1066
BstSCI	CCNGG	4 cut(s)	120, 121, 586, 1248
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	2 cut(s)	441, 510
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
BstV2I	GAAGAC	2 cut(s)	946, 1251
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	2 cut(s)	718, 797
BstYI	RGATCY	1 cut(s)	784
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	301, 1315, 1353
BsuTUI	ATCGAT	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	601
BtsCI	GGATG	5 cut(s)	409, 578, 723, 859, 1132
BtuMI	TCGCGA	1 cut(s)	475
Cac8I	GCNNGC	7 cut(s)	175, 217, 1064, 1068, 1120, 1213, 1363
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	263, 1025
Cfr9I	CCCGGG	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	7 cut(s)	575, 595, 662, 712, 932, 982, 1063
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
DpnI	GATC	4 cut(s)	472, 750, 786, 1287
DpnII	GATC	4 cut(s)	470, 748, 784, 1285
DriI	GACNNNNNGTC	1 cut(s)	947
EaeI	YGGCCR	1 cut(s)	1351
Eam1104I	CTCTTC	4 cut(s)	246, 252, 950, 1450
Eam1105I	GACNNNNNGTC	1 cut(s)	947
EarI	CTCTTC	4 cut(s)	246, 252, 950, 1450
EciI	GGCGGA	1 cut(s)	1052
Ecl136II	GAGCTC	2 cut(s)	1102, 1211
Eco130I	CCWWGG	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	1104, 1213
Eco31I	GGTCTC	2 cut(s)	281, 1465
Eco47I	GGWCC	2 cut(s)	263, 1025
Eco53kI	GAGCTC	2 cut(s)	1102, 1211
Eco57I	CTGAAG	3 cut(s)	676, 1128, 1173
Eco88I	CYCGRG	5 cut(s)	121, 178, 295, 440, 1401
EcoICRI	GAGCTC	2 cut(s)	1102, 1211
EcoNI	CCTNNNNNAGG	1 cut(s)	1203
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	586, 1248
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	1104, 1213
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	7 cut(s)	574, 594, 661, 711, 931, 981, 1062
FauI	CCCGC	1 cut(s)	1115
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
FokI	GGATG	5 cut(s)	416, 565, 730, 846, 1139
FriOI	GRGCYC	2 cut(s)	1104, 1213
Fsp4HI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
FspBI	CTAG	2 cut(s)	531, 758
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	301, 1315, 1353
HapII	CCGG	3 cut(s)	122, 1241, 1517
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HindIII	AAGCTT	2 cut(s)	478, 853
HinfI	GANTC	8 cut(s)	281, 361, 366, 591, 845, 948, 1148, 1224
HpaII	CCGG	3 cut(s)	122, 1241, 1517
HphI	GGTGA	6 cut(s)	90, 421, 576, 715, 917, 1106
Hpy166II	GTNNAC	1 cut(s)	908
Hpy188I	TCNGA	9 cut(s)	141, 190, 286, 501, 544, 850, 877, 1147, 1153
Hpy188III	TCNNGA	9 cut(s)	370, 474, 891, 952, 995, 1135, 1241, 1289, 1468
Hpy8I	GTNNAC	1 cut(s)	908
HpyAV	CCTTC	7 cut(s)	24, 339, 425, 496, 700, 1152, 1384
HpyCH4IV	ACGT	1 cut(s)	1495
HpyCH4V	TGCA	5 cut(s)	341, 578, 736, 1070, 1480
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
HpyF3I	CTNAG	7 cut(s)	187, 524, 780, 896, 912, 1107, 1216
HpySE526I	ACGT	1 cut(s)	1495
Hsp92II	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
HspAI	GCGC	1 cut(s)	521
Kpn2I	TCCGGA	1 cut(s)	1240
Kzo9I	GATC	4 cut(s)	470, 748, 784, 1285
LguI	GCTCTTC	2 cut(s)	950, 1450
LmnI	GCTCC	4 cut(s)	455, 1039, 1099, 1208
Lsp1109I	GCAGC	5 cut(s)	730, 818, 821, 1406, 1417
LweI	GCATC	2 cut(s)	587, 1128
MaeI	CTAG	2 cut(s)	531, 758
MaeII	ACGT	1 cut(s)	1495
MaeIII	GTNAC	2 cut(s)	96, 418
MalI	GATC	4 cut(s)	472, 750, 786, 1287
MboI	GATC	4 cut(s)	470, 748, 784, 1285
MfeI	CAATTG	1 cut(s)	1347
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
MlsI	TGGCCA	1 cut(s)	1353
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	1 cut(s)	957
MmeI	TCCRAC	2 cut(s)	916, 1302
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	1240
MroXI	GAANNNNTTC	2 cut(s)	365, 538
MscI	TGGCCA	1 cut(s)	1353
MseI	TTAA	4 cut(s)	923, 1301, 1337, 1524
MslI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
Msp20I	TGGCCA	1 cut(s)	1353
MspA1I	CMGCKG	3 cut(s)	743, 770, 1122
MspCI	CTTAAG	1 cut(s)	1300
MspI	CCGG	3 cut(s)	122, 1241, 1517
MspR9I	CCNGG	4 cut(s)	122, 123, 588, 1250
MunI	CAATTG	1 cut(s)	1347
Mva1269I	GAATGC	1 cut(s)	1194
MvaI	CCWGG	2 cut(s)	588, 1250
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	170, 486, 776, 803, 1007
NciI	CCSGG	2 cut(s)	122, 123
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	470, 748, 784, 1285
NlaIII	CATG	7 cut(s)	578, 598, 665, 715, 935, 985, 1066
NlaIV	GGNNCC	2 cut(s)	264, 507
NmuCI	GTSAC	2 cut(s)	96, 418
NruI	TCGCGA	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	2 cut(s)	578, 1066
OliI	CACNNNNGTG	2 cut(s)	758, 1403
PaeI	GCATGC	1 cut(s)	1066
PaeR7I	CTCGAG	2 cut(s)	295, 1401
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	2 cut(s)	950, 1450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	1 cut(s)	1194
PdmI	GAANNNNTTC	2 cut(s)	365, 538
PfeI	GAWTC	7 cut(s)	281, 361, 366, 591, 845, 1148, 1224
PkrI	GCNGC	9 cut(s)	308, 745, 772, 808, 811, 1314, 1360, 1396, 1432
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PpuMI	RGGWCCY	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	725
Psp124BI	GAGCTC	2 cut(s)	1104, 1213
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	586, 1248
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	2 cut(s)	586, 1248
PspN4I	GGNNCC	2 cut(s)	264, 507
PspPI	GGNCC	2 cut(s)	263, 1025
PspPPI	RGGWCCY	1 cut(s)	263
PspXI	VCTCGAGB	2 cut(s)	295, 1401
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	743
RruI	TCGCGA	1 cut(s)	475
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
SacI	GAGCTC	2 cut(s)	1104, 1213
SapI	GCTCTTC	2 cut(s)	950, 1450
SaqAI	TTAA	4 cut(s)	923, 1301, 1337, 1524
SatI	GCNGC	9 cut(s)	307, 744, 771, 807, 810, 1313, 1359, 1395, 1431
Sau3AI	GATC	4 cut(s)	470, 748, 784, 1285
Sau96I	GGNCC	2 cut(s)	263, 1025
SchI	GAGTC	1 cut(s)	957
ScrFI	CCNGG	4 cut(s)	122, 123, 588, 1250
SduI	GDGCHC	6 cut(s)	441, 510, 610, 1104, 1213, 1462
SfaNI	GCATC	2 cut(s)	587, 1128
SfcI	CTRYAG	1 cut(s)	1068
Sfr274I	CTCGAG	2 cut(s)	295, 1401
SinI	GGWCC	2 cut(s)	263, 1025
SlaI	CTCGAG	2 cut(s)	295, 1401
SmaI	CCCGGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	6 cut(s)	644, 660, 716, 758, 1199, 1403
SmlI	CTYRAG	5 cut(s)	203, 295, 1300, 1401, 1468
SmoI	CTYRAG	5 cut(s)	203, 295, 1300, 1401, 1468
SpeI	ACTAGT	1 cut(s)	757
SphI	GCATGC	1 cut(s)	1066
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	6 cut(s)	307, 770, 1037, 1122, 1312, 1359
SspI	AATATT	2 cut(s)	108, 134
SspMI	CTAG	2 cut(s)	531, 758
SstI	GAGCTC	2 cut(s)	1104, 1213
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	4 cut(s)	120, 121, 586, 1248
StyI	CCWWGG	1 cut(s)	491
TaiI	ACGT	1 cut(s)	1498
TaqI	TCGA	4 cut(s)	296, 364, 951, 1402
TauI	GCSGC	4 cut(s)	309, 773, 1315, 1361
TfiI	GAWTC	7 cut(s)	281, 361, 366, 591, 845, 1148, 1224
Tru1I	TTAA	4 cut(s)	923, 1301, 1337, 1524
Tru9I	TTAA	4 cut(s)	923, 1301, 1337, 1524
TseFI	GTSAC	2 cut(s)	96, 418
TseI	GCWGC	5 cut(s)	743, 806, 809, 1394, 1430
Tsp45I	GTSAC	2 cut(s)	96, 418
TspDTI	ATGAA	5 cut(s)	66, 367, 894, 1431, 1505
TspGWI	ACGGA	1 cut(s)	860
TspMI	CCCGGG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	1300
VpaK11BI	GGWCC	2 cut(s)	263, 1025
XagI	CCTNNNNNAGG	1 cut(s)	1203
XapI	RAATTY	4 cut(s)	116, 373, 446, 728
XceI	RCATGY	2 cut(s)	578, 1066
XhoI	CTCGAG	2 cut(s)	295, 1401
XmaI	CCCGGG	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	365, 538
XspI	CTAG	2 cut(s)	531, 758
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.