RchiOBHm_Chr3g0494461

Copper-transporting ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018103
Physical Location & Seq
Reverse (-)
43200115 .. 43211409
11295 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45699

Sequence Viewer

Length: 378 bp
ATGCTCACAGGAGAATCGCTTCCTGTATTTAAGGAAAAAGAACTTACCGTCTCAGCTGGAACAATAAATTGGGATGGTCCTCTGAGAATTGAAGCAACTTCAACTGGCTCCAATTCAATGATTTCCAAGATTGTTCGCATGGTTGAGGATGCTCAAGGCCATGAAGCACCAATTCAAAGGCTTGCTGATTCAATAGCTGGACCTTTTGTATACACTATAATGACTCTCTCAGCTACAACATTTGCTTTTTGGTACTACATTGGAACTCATATTTTTCCTGATGTTTTGCTCAATGATATTGCTGGGCCAGATGGAGATTCATTGCTATTGAGCTTGAAACTAGCTGTGGATGTCTTGGTGTGTATGGTGAACAAATGA

Protein Analysis

125

Amino Acids

13.56

Weight (kDa)

4.64

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 1 - 49 2.7e-11 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 6 cut(s) 92, 102, 117, 176, 192, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 5 cut(s) 56, 197, 233, 333, 344
AluI AGCT 5 cut(s) 56, 197, 233, 333, 344
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 2 cut(s) 157, 305
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 3 cut(s) 77, 200, 305
AvaII GGWCC 2 cut(s) 77, 200
BccI CCATC 2 cut(s) 68, 305
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 77, 200
BmgT120I GGNCC 3 cut(s) 77, 200, 305
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 320
BseGI GGATG 3 cut(s) 79, 154, 355
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 3 cut(s) 66, 74, 243
BseNI ACTGG 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 159, 307
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 2 cut(s) 159, 307
BspANI GGCC 2 cut(s) 159, 307
BspCNI CTCAG 3 cut(s) 65, 75, 242
BspLI GGNNCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 211
Bst1107I GTATAC 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 52, 83, 229
BstF5I GGATG 3 cut(s) 79, 154, 355
BstMAI GTCTC 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 2 cut(s) 159, 307
BtsCI GGATG 3 cut(s) 79, 154, 355
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 77, 200, 305
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 139, 161
CviJI RGCY 9 cut(s) 56, 108, 159, 181, 197, 233, 307, 333, 344
CviKI_1 RGCY 9 cut(s) 56, 108, 159, 181, 197, 233, 307, 333, 344
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 52, 83, 229
Eco47I GGWCC 2 cut(s) 77, 200
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 2 cut(s) 142, 164
FaiI YATR 6 cut(s) 140, 162, 211, 218, 270, 365
FatI CATG 2 cut(s) 138, 160
FblI GTMKAC 1 cut(s) 210
FokI GGATG 3 cut(s) 86, 161, 362
FspBI CTAG 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 159, 307
Hin1II CATG 2 cut(s) 142, 164
HinfI GANTC 4 cut(s) 14, 188, 223, 317
Hpy166II GTNNAC 2 cut(s) 211, 370
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 211, 370
HpyCH4III ACNGT 1 cut(s) 49
HpyF3I CTNAG 3 cut(s) 52, 83, 229
Hsp92II CATG 2 cut(s) 142, 164
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 7 cut(s) 36, 42, 90, 183, 288, 291, 321
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 341
MluCI AATT 4 cut(s) 67, 87, 112, 171
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 90, 139
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 56
NlaIII CATG 2 cut(s) 142, 164
NlaIV GGNNCC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 3 cut(s) 14, 188, 317
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 3 cut(s) 77, 200, 305
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 77, 200, 305
SchI GAGTC 1 cut(s) 217
SetI ASST 6 cut(s) 58, 199, 205, 235, 335, 346
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 2 cut(s) 77, 200
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 4 cut(s) 67, 87, 112, 171
SspMI CTAG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 49
TasI AATT 4 cut(s) 67, 87, 112, 171
TfiI GAWTC 3 cut(s) 14, 188, 317
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 177, 309
VpaK11BI GGWCC 2 cut(s) 77, 200
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.