Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004904.1

Orthogroup ID

OG0018103

Physical Location & Seq

Genomic Coordinates Forward (+)

55707 .. 61569

Gene Structure 5863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004904.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgagggaaatcaaggtccagaagctagtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaagaatgaaaaaccccctattaatctcagtctcagactctctatacgactggtgaatgagaatgtggcacaatatggtggggatgaagtgtgtgccccgatgccggttataagggacgtcctgtatgatgatgttgcactctatggggctggttatctctgcaatctcactcgaagcttcaaccttcagacaggaaccctcactgaaggaaaacctgttgtttctagcattgcttctttcaagttcaaacaattgtatatgttggacgtgaaggggaagggaagagttctggctggaagaagtgttgtggatgagtccatgctcacaggagaatcgcttcctatattcaaggaaaaagaacttaccgtctcagctggaacaataaattgggatggtcctctgagaattgaagcaacttcaactggctccaattcaatgatttccaagattgttcgcatggttgaggatgctcaaggccatgaagcaccaattcaaaggcttgctgattcaatagctggaccttttgtatacactataatgactctctcagctacaacatttgctttttggtactacattggaactcatatttttcctgatgttttgctcaatgatattgctgggccagatggagattcattgctgttgagcttgaaactagctgtggatgtcttggtagtttcttgcccttgtgcactgggtcttgcaacacccacagcaatcctagttggcacttctcttggagcaaggcaaggactccttgtgagaggagcagatgtattggaacgcttggccagtatagatcatattgctttagacaaggttggtgatggcataaatgatgcaccttctttggctcttgccgacgttgggattgctcttcagattgagggacaagaaaatgctgcttcaaatgctgcatcgattatactacttggaaacaaattatcacaagaacctctttctcatatggaccagaatgtccagaattgtccctatccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

360

Amino Acids

38.45

Weight (kDa)

5.05

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018103)

Species	Orthologous Gene IDs
malus_domestica	MD09G1288500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0494461 RchiOBHm_Chr5g0017581
rosa_laevigata	RLG00000022668
rosa_multiflora	Rmu_sc0004142.1_g000030 Rmu_sc0004904.1_g000014 Rmu_sc0005381.1_g000001 Rmu_sc0006413.1_g000025
rosa_roxburghii	Rroxscaffold_4G00314810
rosa_samantha	Rh3BG323700 Rh5DG520900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	1058
AatII	GACGTC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	2 cut(s)	54, 75
AcoI	YGGCCR	1 cut(s)	870
AcuI	CTGAAG	3 cut(s)	248, 303, 944
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	2 cut(s)	181, 948
AjiI	CACGTC	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	7 cut(s)	25, 255, 452, 593, 629, 729, 740
AluI	AGCT	7 cut(s)	25, 255, 452, 593, 629, 729, 740
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	3 cut(s)	68, 113, 451
Alw44I	GTGCAC	1 cut(s)	771
AoxI	GGCC	4 cut(s)	72, 553, 701, 870
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	983, 995
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
AsuHPI	GGTGA	3 cut(s)	58, 142, 917
AvaII	GGWCC	4 cut(s)	16, 473, 596, 1051
BaeGI	GKGCMC	2 cut(s)	175, 775
BalI	TGGCCA	1 cut(s)	872
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	970, 982
BccI	CCATC	3 cut(s)	464, 701, 902
BcoDI	GTCTC	3 cut(s)	68, 113, 451
BfaI	CTAG	4 cut(s)	26, 303, 737, 803
BisI	GCNGC	4 cut(s)	55, 75, 984, 996
BlsI	GCNGC	4 cut(s)	56, 76, 985, 997
Bme18I	GGWCC	4 cut(s)	16, 473, 596, 1051
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
BmiI	GGNNCC	2 cut(s)	274, 505
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	4 cut(s)	168, 535, 910, 1007
BmuI	ACTGGG	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	1001
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 948
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	4 cut(s)	132, 505, 780, 873
Bse3DI	GCAATG	2 cut(s)	306, 716
BseCI	ATCGAT	1 cut(s)	1001
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	5 cut(s)	166, 394, 475, 550, 751
BseLI	CCNNNNNNNGG	2 cut(s)	181, 948
BseMI	GCAATG	2 cut(s)	306, 716
BseMII	CTCAG	5 cut(s)	118, 124, 462, 470, 639
BseNI	ACTGG	4 cut(s)	132, 505, 780, 873
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	2 cut(s)	175, 775
BseXI	GCAGC	2 cut(s)	970, 982
BseYI	CCCAGC	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	4 cut(s)	74, 555, 703, 872
BshVI	ATCGAT	1 cut(s)	1001
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	3 cut(s)	206, 984, 1056
BslI	CCNNNNNNNGG	2 cut(s)	181, 948
BsmAI	GTCTC	3 cut(s)	68, 113, 451
BsmBI	CGTCTC	2 cut(s)	68, 451
BsmFI	GGGAC	3 cut(s)	206, 984, 1056
BsnI	GGCC	4 cut(s)	74, 555, 703, 872
Bsp1286I	GDGCHC	2 cut(s)	175, 775
Bsp143I	GATC	2 cut(s)	58, 880
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	4 cut(s)	74, 555, 703, 872
BspCNI	CTCAG	5 cut(s)	117, 123, 461, 471, 638
BspDI	ATCGAT	1 cut(s)	1001
BspLI	GGNNCC	2 cut(s)	274, 505
BspQI	GCTCTTC	1 cut(s)	963
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	306, 716
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	4 cut(s)	132, 505, 780, 873
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	58, 880
BssNAI	GTATAC	1 cut(s)	607
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	355, 963
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
BstF5I	GGATG	5 cut(s)	166, 394, 475, 550, 751
BstKTI	GATC	2 cut(s)	61, 883
BstMAI	GTCTC	3 cut(s)	68, 113, 451
BstMBI	GATC	2 cut(s)	58, 880
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 992
BstSLI	GKGCMC	2 cut(s)	175, 775
BstV1I	GCAGC	2 cut(s)	970, 982
BstZ17I	GTATAC	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	1001
BsuRI	GGCC	4 cut(s)	74, 555, 703, 872
BsuTUI	ATCGAT	1 cut(s)	1001
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	5 cut(s)	166, 394, 475, 550, 751
BtsIMutI	CAGTG	2 cut(s)	279, 773
Cac8I	GCNNGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
ClaI	ATCGAT	1 cut(s)	1001
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	3 cut(s)	397, 535, 557
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
DpnI	GATC	2 cut(s)	60, 882
DpnII	GATC	2 cut(s)	58, 880
DrdI	GACNNNNNNGTC	1 cut(s)	1058
DseDI	GACNNNNNNGTC	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	355, 963
EarI	CTCTTC	2 cut(s)	355, 963
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	4 cut(s)	16, 473, 596, 1051
Eco57I	CTGAAG	3 cut(s)	248, 303, 944
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	2 cut(s)	68, 451
FaeI	CATG	3 cut(s)	400, 538, 560
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 1023, 1055
FaqI	GGGAC	3 cut(s)	206, 984, 1056
FatI	CATG	3 cut(s)	396, 534, 556
FauNDI	CATATG	1 cut(s)	1047
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	55, 75, 984, 996
FokI	GGATG	5 cut(s)	173, 401, 482, 557, 758
Fsp4HI	GCNGC	4 cut(s)	55, 75, 984, 996
FspBI	CTAG	4 cut(s)	26, 303, 737, 803
GluI	GCNGC	4 cut(s)	55, 75, 984, 996
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	74, 555, 703, 872
HapII	CCGG	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	400, 538, 560
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	7 cut(s)	114, 392, 410, 584, 619, 713, 834
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	58, 142, 917
Hpy166II	GTNNAC	2 cut(s)	607, 773
Hpy188I	TCNGA	4 cut(s)	113, 267, 480, 963
Hpy188III	TCNNGA	3 cut(s)	19, 674, 1063
Hpy8I	GTNNAC	2 cut(s)	607, 773
Hpy99I	CGWCG	2 cut(s)	47, 947
HpyAV	CCTTC	5 cut(s)	272, 278, 343, 349, 936
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	3 cut(s)	195, 345, 945
HpyCH4V	TGCA	6 cut(s)	215, 240, 773, 785, 923, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 992
HpyF3I	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
HpySE526I	ACGT	3 cut(s)	195, 345, 945
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	400, 538, 560
Kzo9I	GATC	2 cut(s)	58, 880
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	509, 821, 848
Lsp1109I	GCAGC	2 cut(s)	970, 982
LweI	GCATC	4 cut(s)	168, 535, 910, 1007
MaeI	CTAG	4 cut(s)	26, 303, 737, 803
MaeII	ACGT	3 cut(s)	195, 345, 945
MalI	GATC	2 cut(s)	60, 882
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	58, 880
MboII	GAAGA	3 cut(s)	372, 387, 950
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	175, 775
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
MluNI	TGGCCA	1 cut(s)	872
MlyI	GAGTC	4 cut(s)	108, 401, 613, 828
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	7 cut(s)	41, 287, 486, 535, 839, 961, 1047
Mox20I	TGGCCA	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	872
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	54, 992
NdeI	CATATG	1 cut(s)	1047
NdeII	GATC	2 cut(s)	58, 880
NlaIII	CATG	3 cut(s)	400, 538, 560
NlaIV	GGNNCC	2 cut(s)	274, 505
PciSI	GCTCTTC	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	410, 584, 713
PkrI	GCNGC	4 cut(s)	56, 76, 985, 997
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	4 cut(s)	108, 400, 613, 828
PpsI	GAGTC	4 cut(s)	108, 400, 613, 828
PshBI	ATTAAT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	274, 505
PspPI	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	55, 75, 984, 996
Sau3AI	GATC	2 cut(s)	58, 880
Sau96I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
SchI	GAGTC	4 cut(s)	108, 401, 613, 828
SduI	GDGCHC	2 cut(s)	175, 775
SfaNI	GCATC	4 cut(s)	168, 535, 910, 1007
SinI	GGWCC	4 cut(s)	16, 473, 596, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
Sse9I	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	4 cut(s)	26, 303, 737, 803
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	3 cut(s)	198, 348, 948
TaqI	TCGA	2 cut(s)	250, 1001
TasI	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	3 cut(s)	410, 584, 713
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	286, 780
TseI	GCWGC	2 cut(s)	983, 995
TspDTI	ATGAA	4 cut(s)	99, 177, 573, 705
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	286, 780
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	4 cut(s)	16, 473, 596, 1051
VspI	ATTAAT	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	4 cut(s)	26, 303, 737, 803
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.