Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018103

Physical Location & Seq

Genomic Coordinates Reverse (-)

38974700 .. 38976978

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTTCTTTCAAATTATTCAAAAACAATTGTATATGTTGGACGTGAAGGGGAAGGTATCATCGGTGCTATTGCAATATCCGACGACTGCGGGAAGATGCTGAGTTTACTTGTAACTAGGATTATCGGCGTTTTTTCTGCATGGTGTGCTGACTTGTTTTTGCTTCGATTGGAAGACTCCAGCAGAAGAGTATCGAACTGTCCTGTTTTCGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAATCAGTTGGAATAGAAAAGGAATTTATCAACTCATCATTGACTCCACAGGGAAAATCTGGAGCTATTTCTAGTCTTAAAGCTGCAGGGCATCATGTTGCAATGTCCAGCAAACAAGCTGTCTTCCTCCTTCTCATTATAATACACGGGAGAGCTCTTCCCATGCACAACACCATAAGGAGAACGAACAACATTCCCTGCAACACCACAAAGATCACTTACAAGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

158

Amino Acids

17.12

Weight (kDa)

9.47

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018103)

Species	Orthologous Gene IDs
malus_domestica	MD09G1288500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0494461 RchiOBHm_Chr5g0017581
rosa_laevigata	RLG00000022668
rosa_multiflora	Rmu_sc0004142.1_g000030 Rmu_sc0004904.1_g000014 Rmu_sc0005381.1_g000001 Rmu_sc0006413.1_g000025
rosa_roxburghii	Rroxscaffold_4G00314810
rosa_samantha	Rh3BG323700 Rh5DG520900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	12, 21
AjiI	CACGTC	1 cut(s)	44
AluBI	AGCT	4 cut(s)	308, 326, 362, 398
AluI	AGCT	4 cut(s)	308, 326, 362, 398
Alw21I	GWGCWC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	266
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	2 cut(s)	180, 358
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	117, 315
BfmI	CTRYAG	2 cut(s)	237, 327
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	44
BmsI	GCATC	2 cut(s)	87, 343
BpiI	GAAGAC	2 cut(s)	180, 358
BpmI	CTGGAG	2 cut(s)	163, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	351
BssMI	GATC	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	3 cut(s)	181, 216, 405
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 239
BstSFI	CTRYAG	2 cut(s)	237, 327
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	2 cut(s)	180, 358
BtrI	CACGTC	1 cut(s)	44
CviAII	CATG	3 cut(s)	141, 338, 406
CviJI	RGCY	4 cut(s)	308, 326, 362, 398
CviKI_1	RGCY	4 cut(s)	308, 326, 362, 398
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
Eam1104I	CTCTTC	3 cut(s)	181, 216, 405
EarI	CTCTTC	3 cut(s)	181, 216, 405
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	3 cut(s)	144, 341, 409
FaiI	YATR	8 cut(s)	34, 36, 142, 239, 339, 383, 407, 419
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	140, 337, 405
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	117, 315
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	163, 324
Hin1II	CATG	3 cut(s)	144, 341, 409
HinfI	GANTC	2 cut(s)	176, 286
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	41, 47, 383
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	7 cut(s)	74, 140, 233, 329, 344, 409, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 239
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	144, 341, 409
Kzo9I	GATC	1 cut(s)	456
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	8 cut(s)	193, 202, 216, 278, 288, 315, 364, 454
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	87, 343
MaeI	CTAG	2 cut(s)	117, 315
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	6 cut(s)	106, 185, 198, 233, 358, 392
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	13, 27, 266
MlyI	GAGTC	2 cut(s)	170, 280
MmeI	TCCRAC	3 cut(s)	19, 105, 232
MnlI	CCTC	2 cut(s)	217, 380
MseI	TTAA	1 cut(s)	321
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	146, 239
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	3 cut(s)	144, 341, 409
PciSI	GCTCTTC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	170, 280
PpsI	GAGTC	2 cut(s)	170, 280
PsiI	TTATAA	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	456
SchI	GAGTC	2 cut(s)	170, 280
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	6 cut(s)	46, 58, 310, 328, 364, 400
SfaNI	GCATC	2 cut(s)	87, 343
SfcI	CTRYAG	2 cut(s)	237, 327
Sse9I	AATT	3 cut(s)	13, 27, 266
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	117, 315
SstI	GAGCTC	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	166, 194
TasI	AATT	3 cut(s)	13, 27, 266
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	2 cut(s)	117, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.