Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018103

Physical Location & Seq

Genomic Coordinates Reverse (-)

33501835 .. 33502466

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG323700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATTCTCTCAGCTACAACATTTGCTTTTTGGTACTACATTGGAACTCATATTTTTCCTGATGTTTTGCTCAATGATATTGCTGGGCCAGATGGAGATTCATTGCTGTTGAGCTTGAAACTAGCTGTGGATGTCTTGAAGGGTATCAGAACTGTCCTGTTTTCTGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAATCAGTTGGAATAGAAAAGGAATTTATCAAGTCATCATTGACTCCACAGGGAAAATCTGGAGCTATTTCTAGTCTTAAAGCTACAGGGCATCATGTTGCAATGCTATGCCAAAGCTGTTGTAACATTGAAATCCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

113

Amino Acids

12.1

Weight (kDa)

5.83

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018103)

Species	Orthologous Gene IDs
malus_domestica	MD09G1288500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0494461 RchiOBHm_Chr5g0017581
rosa_laevigata	RLG00000022668
rosa_multiflora	Rmu_sc0004142.1_g000030 Rmu_sc0004904.1_g000014 Rmu_sc0005381.1_g000001 Rmu_sc0006413.1_g000025
rosa_roxburghii	Rroxscaffold_4G00314810
rosa_samantha	Rh3BG323700 Rh5DG520900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	118, 139, 329
AluBI	AGCT	6 cut(s)	14, 114, 125, 263, 281, 315
AluI	AGCT	6 cut(s)	14, 114, 125, 263, 281, 315
AoxI	GGCC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	122, 270
BfmI	CTRYAG	2 cut(s)	192, 282
BmgT120I	GGNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	279
Bse3DI	GCAATG	2 cut(s)	101, 306
BseGI	GGATG	1 cut(s)	136
BseMI	GCAATG	2 cut(s)	101, 306
BseMII	CTCAG	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	101, 306
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	192, 282
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	7 cut(s)	14, 88, 114, 125, 263, 281, 315
CviKI_1	RGCY	7 cut(s)	14, 88, 114, 125, 263, 281, 315
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	296
FaiI	YATR	4 cut(s)	51, 194, 294, 307
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	292
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	2 cut(s)	122, 270
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	296
HinfI	GANTC	3 cut(s)	4, 98, 241
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	3 cut(s)	59, 136, 258
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	188, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	9 cut(s)	69, 72, 102, 150, 157, 170, 233, 243, 270
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	122, 270
MaeIII	GTNAC	1 cut(s)	320
MboII	GAAGA	1 cut(s)	188
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	4, 98
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	235
SetI	ASST	6 cut(s)	16, 116, 127, 265, 283, 317
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	2 cut(s)	192, 282
Sse9I	AATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	122, 270
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	4, 98
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	90
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	2 cut(s)	122, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.