RLG00000022668

Copper-transporting ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018103
Physical Location & Seq
Reverse (-)
7173034 .. 7174737
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022668

Sequence Viewer

Length: 419 bp
ATGAGCAGGAGCAAGGCAAGGACTCCTTGTGAGAGGAGCAAATGTATTGGATTGCTTGGCCAGGGAAGGTATATCGGTGCTATTGCAATATCCGACAGCCTGCGGGAAGATGCTGAGTTTACTGTAACTAGACTCCAGCAGAAGGGTATCAGAACTGTCCTGTTTTCTGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAATCAGTTGGAATAGAAAAGGAATTTATCAAGTCATCATTGACTCCACAGGGAAAATCTGGAGCTATTTCTAGTCTTAAAGCTGCAGGGCATCATGTTTCAATGGTTGGTGATGGCATAAATGATGCACCTTCTTTCGCTCTTGCCGACGTTGGGATTGCTCTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCGTTTCTTGAGCGTGAGCATAG

Protein Analysis

139

Amino Acids

14.79

Weight (kDa)

9.0

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 23 - 117 8e-15 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 224, 393
AfiI CCNNNNNNNGG 2 cut(s) 142, 354
AgsI TTSAA 1 cut(s) 303
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 266, 284
AluI AGCT 2 cut(s) 266, 284
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 224, 393
AsuHPI GGTGA 1 cut(s) 323
BalI TGGCCA 1 cut(s) 60
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 62
BfaI CTAG 3 cut(s) 129, 273, 389
BfmI CTRYAG 2 cut(s) 195, 285
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 100, 301, 316
BpmI CTGGAG 2 cut(s) 119, 282
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 354
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 142, 354
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 142, 354
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 60
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 124, 157
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 2 cut(s) 195, 285
BstV1I GCAGC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 101
CviAII CATG 1 cut(s) 296
CviJI RGCY 4 cut(s) 60, 99, 266, 284
CviKI_1 RGCY 4 cut(s) 60, 99, 266, 284
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 299
FaiI YATR 5 cut(s) 72, 197, 297, 320, 417
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 295
FauI CCCGC 1 cut(s) 96
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 3 cut(s) 129, 273, 389
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 119, 282
HaeIII GGCC 1 cut(s) 60
Hin1II CATG 1 cut(s) 299
HinfI GANTC 3 cut(s) 22, 132, 244
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 120, 370
Hpy188I TCNGA 2 cut(s) 94, 152
Hpy188III TCNNGA 2 cut(s) 261, 404
Hpy8I GTNNAC 2 cut(s) 120, 370
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 3 cut(s) 60, 136, 342
HpyCH4III ACNGT 2 cut(s) 124, 157
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 4 cut(s) 86, 191, 287, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 299
LmnI GCTCC 3 cut(s) 9, 36, 263
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 3 cut(s) 100, 301, 316
MaeI CTAG 3 cut(s) 129, 273, 389
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 124
MboII GAAGA 2 cut(s) 119, 191
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 224, 393
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 3 cut(s) 16, 126, 238
MmeI TCCRAC 2 cut(s) 117, 190
MnlI CCTC 2 cut(s) 27, 175
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 3 cut(s) 16, 126, 238
PpsI GAGTC 3 cut(s) 16, 126, 238
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PstI CTGCAG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 285
SchI GAGTC 3 cut(s) 16, 126, 238
ScrFI CCNGG 1 cut(s) 62
SetI ASST 5 cut(s) 71, 268, 286, 334, 354
SfaNI GCATC 3 cut(s) 100, 301, 316
SfcI CTRYAG 2 cut(s) 195, 285
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 2 cut(s) 224, 393
SsiI CCGC 1 cut(s) 103
SspMI CTAG 3 cut(s) 129, 273, 389
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 124, 157
TaiI ACGT 1 cut(s) 354
TasI AATT 2 cut(s) 224, 393
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseI GCWGC 1 cut(s) 284
XapI RAATTY 2 cut(s) 224, 393
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 3 cut(s) 129, 273, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.