RchiOBHm_Chr3g0496731

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018167
Physical Location & Seq
Forward (+)
47977403 .. 47978377
975 bp
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UTR
Exon/CDS
Intron
PRQ45903

Sequence Viewer

Length: 498 bp
ATGGGGAGTGGGATTGAGCTTGAGGGATGGACATGGAGCGAAGAAGGATTTGAATTTGGGGGTGGGGGGTCTCAATTATCTCCTTCATCTCTCTCTCAATCTTTGATTTCCCCTAATCTTTTCAATTTCAAAATCCGATGTGTGCAGGTATCGTTATGCAGAATGTTCCACTCGCCAGTGACACAGGCACTGTGGGAAGTCACGTCTCTGAAGTTCGAGAGGCTCTTGGACCCACTAGTAGACGCTCCTCCGCAGAGCCAATTGATAAAGAAGAGTCCATCACAGAGCAGGACTGCAATTCCCTACAATTTCTCTACTGATTTTATACTGAGGGAGCAGTATGGGGATCCTTGGAATGAGGTCAGAATTGGGAAACTGCTTGAAGACCTTGATGCTTTAGCTAAAACCATTTCTGTTAAGGTTGGGAAAATGGTGCAAGTGGAGTGGCGTTCAAGGTGCTTAATATTATCAAGCTTTATGGAAACTCAATCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

165

Amino Acids

18.56

Weight (kDa)

5.47

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018167)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0496731 RchiOBHm_Chr6g0282071
rosa_laevigata RLG00000012911 RLG00000012915 RLG00000036813
rosa_multiflora Rmu_sc0001700.1_g000034 Rmu_sc0005149.1_g000003 Rmu_sc0011075.1_g000010
rosa_rugosa Rorug06G0145200
rosa_samantha Rh6CG260400
rosa_wichuraiana Rw6G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 251
AclWI GGATC 2 cut(s) 341, 354
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 230
AgsI TTSAA 5 cut(s) 53, 124, 130, 383, 453
AhlI ACTAGT 1 cut(s) 235
AjiI CACGTC 1 cut(s) 204
AluBI AGCT 3 cut(s) 19, 401, 474
AluI AGCT 3 cut(s) 19, 401, 474
Alw26I GTCTC 2 cut(s) 75, 210
AlwI GGATC 2 cut(s) 341, 354
AlwNI CAGNNNCTG 1 cut(s) 190
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 229
BamHI GGATCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 390
BccI CCATC 2 cut(s) 21, 286
BcoDI GTCTC 2 cut(s) 75, 210
BcuI ACTAGT 1 cut(s) 235
BfaI CTAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 231, 348
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 75, 210
BsmBI CGTCTC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 231, 348
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 341, 354
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 75, 210
BstMBI GATC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 183, 188
BveI ACCTGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 425, 460
CviAII CATG 1 cut(s) 33
CviJI RGCY 5 cut(s) 19, 223, 258, 401, 474
CviKI_1 RGCY 5 cut(s) 19, 223, 258, 401, 474
DdeI CTNAG 1 cut(s) 329
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 1 cut(s) 36
FaiI YATR 5 cut(s) 34, 157, 326, 342, 479
FatI CATG 1 cut(s) 32
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 39
FspBI CTAG 1 cut(s) 236
HgaI GACGC 1 cut(s) 251
Hin1II CATG 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 137, 210, 365
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 38, 93
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 145, 159, 296, 436
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 1 cut(s) 36
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 3 cut(s) 36, 250, 334
LpnPI CCDG 4 cut(s) 131, 170, 189, 274
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 178, 199
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 53, 283, 395
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 346
MluCI AATT 7 cut(s) 53, 74, 124, 260, 297, 307, 366
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 5 cut(s) 16, 213, 258, 324, 352
MseI TTAA 2 cut(s) 417, 461
MunI CAATTG 1 cut(s) 260
NdeII GATC 1 cut(s) 346
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 231, 348
NmuCI GTSAC 2 cut(s) 178, 199
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 231, 348
PspPI GGNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 346
SaqAI TTAA 2 cut(s) 417, 461
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 283
SetI ASST 9 cut(s) 21, 150, 206, 363, 390, 403, 423, 458, 476
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 235
Sse9I AATT 7 cut(s) 53, 74, 124, 260, 297, 307, 366
SsiI CCGC 1 cut(s) 251
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 216
TasI AATT 7 cut(s) 53, 74, 124, 260, 297, 307, 366
Tru1I TTAA 2 cut(s) 417, 461
Tru9I TTAA 2 cut(s) 417, 461
TscAI CASTG 2 cut(s) 183, 195
TseFI GTSAC 2 cut(s) 178, 199
Tsp45I GTSAC 2 cut(s) 178, 199
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 183, 195
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.