Rorug06G0145200

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000203
Physical Location & Seq
Reverse (-)
20754894 .. 20758618
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0145200.1

Sequence Viewer

Length: 537 bp
ATGGCATTGCAGAAGTGCGTGCTCAAGCTTGCAGGCCTGTGCGCTCGTTCAAAGTATCGCAGTGGCTTGTTGAGCAAGCAGCAGCTTCCTCAGCCCAAACTCCATGGAACTCGTGCCCTGTCTGAAGAAGGGCTTCGAGGATCAAGGTCGTCAAAACCTAGCTCCGAATCTGGAAGTTCACAGGAGCATCCTCTTTCATTGATGGAAACTGAATATGAAAAGCTTCGGGTTGAGATGAAGAAGATGCACAGTGAATTATTGAGGCACATTTCCGAGTCAGTAAAACCTAATACAAGTCAGCAGCAGAAGCGTCGTTTTTCAAAGATGGAATTTGAAACAGATAAGGTTCAGAAAGACTTCCAAAACATGATCAGTGATGAGATTGGCGAGAAATTCAACAAAATAAGTCAAGAACTTGCTGCACAAAGTGCTGAGATCAAAGTCATACGCAATTATACGGCAGTTTGTCAGGTGGCCTCAGGCTGGATCATTGGGACTGCACTCGGCACTATAATTGGTAGTCTGCTGTATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

9.54

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 148, 494
AcsI RAATTY 2 cut(s) 329, 392
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 4 cut(s) 51, 321, 335, 397
AluBI AGCT 4 cut(s) 28, 85, 162, 223
AluI AGCT 4 cut(s) 28, 85, 162, 223
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 2 cut(s) 148, 494
AoxI GGCC 2 cut(s) 34, 474
ApeKI GCWGC 4 cut(s) 79, 82, 301, 419
ApoI RAATTY 2 cut(s) 329, 392
Asp700I GAANNNNTTC 3 cut(s) 132, 222, 356
AspLEI GCGC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 118
BauI CACGAG 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 91, 94, 313, 406
BccI CCATC 2 cut(s) 196, 319
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BclI TGATCA 1 cut(s) 369
BfaI CTAG 1 cut(s) 159
BisI GCNGC 4 cut(s) 80, 83, 302, 420
BlsI GCNGC 4 cut(s) 81, 84, 303, 421
BmsI GCATC 2 cut(s) 196, 234
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse21I CCTNAGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 3 cut(s) 104, 423, 492
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 4 cut(s) 91, 94, 313, 406
BsgI GTGCAG 2 cut(s) 405, 483
BshFI GGCC 2 cut(s) 36, 476
BsiHKAI GWGCWC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 2 cut(s) 36, 476
Bsp1286I GDGCHC 2 cut(s) 24, 118
Bsp143I GATC 4 cut(s) 140, 369, 435, 486
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 2 cut(s) 36, 476
BspCNI CTCAG 3 cut(s) 103, 424, 491
BspPI GGATC 2 cut(s) 148, 494
BsrDI GCAATG 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 4 cut(s) 140, 369, 435, 486
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 4 cut(s) 20, 30, 34, 77
BstDEI CTNAG 3 cut(s) 90, 432, 478
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 143, 372, 438, 489
BstMBI GATC 4 cut(s) 140, 369, 435, 486
BstMWI GCNNNNNNNGC 4 cut(s) 72, 91, 307, 428
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 4 cut(s) 91, 94, 313, 406
Bsu36I CCTNAGG 1 cut(s) 478
BsuRI GGCC 2 cut(s) 36, 476
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 67, 256, 379
Cac8I GCNNGC 4 cut(s) 20, 30, 34, 77
CfoI GCGC 1 cut(s) 44
CseI GACGC 1 cut(s) 299
CviAII CATG 2 cut(s) 104, 367
DdeI CTNAG 3 cut(s) 90, 432, 478
DpnI GATC 4 cut(s) 142, 371, 437, 488
DpnII GATC 4 cut(s) 140, 369, 435, 486
DraIII CACNNNGTG 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 107, 370
FaiI YATR 7 cut(s) 105, 216, 368, 446, 456, 512, 531
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 103, 366
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 80, 83, 302, 420
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 80, 83, 302, 420
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 43
GluI GCNGC 4 cut(s) 80, 83, 302, 420
HaeIII GGCC 2 cut(s) 36, 476
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 107, 370
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 26, 221
HinfI GANTC 2 cut(s) 167, 275
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 4 cut(s) 124, 166, 274, 351
Hpy188III TCNNGA 2 cut(s) 171, 410
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 10, 32, 247, 422, 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 91, 307, 428
HpyF3I CTNAG 3 cut(s) 90, 432, 478
Hsp92II CATG 2 cut(s) 107, 370
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 140, 369, 435, 486
LmnI GCTCC 2 cut(s) 167, 184
LpnPI CCDG 8 cut(s) 18, 50, 131, 156, 167, 455, 465, 469
Lsp1109I GCAGC 4 cut(s) 91, 94, 313, 406
LweI GCATC 2 cut(s) 196, 234
MaeI CTAG 1 cut(s) 159
MalI GATC 4 cut(s) 142, 371, 437, 488
MboI GATC 4 cut(s) 140, 369, 435, 486
MboII GAAGA 3 cut(s) 137, 250, 253
MhlI GDGCHC 2 cut(s) 24, 118
MluCI AATT 5 cut(s) 254, 329, 392, 451, 513
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 5 cut(s) 99, 131, 201, 255, 487
MroXI GAANNNNTTC 3 cut(s) 132, 222, 356
MwoI GCNNNNNNNGC 4 cut(s) 72, 91, 307, 428
NcoI CCATGG 1 cut(s) 103
NdeII GATC 4 cut(s) 140, 369, 435, 486
NlaIII CATG 2 cut(s) 107, 370
NmeAIII GCCGAG 1 cut(s) 483
PceI AGGCCT 1 cut(s) 36
PdmI GAANNNNTTC 3 cut(s) 132, 222, 356
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 81, 84, 303, 421
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
SatI GCNGC 4 cut(s) 80, 83, 302, 420
Sau3AI GATC 4 cut(s) 140, 369, 435, 486
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 24, 118
SetI ASST 9 cut(s) 30, 87, 149, 160, 164, 225, 289, 348, 474
SfaNI GCATC 2 cut(s) 196, 234
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 254, 329, 392, 451, 513
SseBI AGGCCT 1 cut(s) 36
SspMI CTAG 1 cut(s) 159
StuI AGGCCT 1 cut(s) 36
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 136
TasI AATT 5 cut(s) 254, 329, 392, 451, 513
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 3 cut(s) 67, 256, 379
TseI GCWGC 4 cut(s) 79, 82, 301, 419
TspDTI ATGAA 3 cut(s) 186, 231, 251
TspRI CASTG 3 cut(s) 67, 256, 379
XapI RAATTY 2 cut(s) 329, 392
XmnI GAANNNNTTC 3 cut(s) 132, 222, 356
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.