ADP binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1367 |
| AarI | CACCTGC | 1 cut(s) | 550 |
| AatII | GACGTC | 1 cut(s) | 1872 |
| Acc36I | ACCTGC | 1 cut(s) | 550 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 309 |
| AccI | GTMKAC | 2 cut(s) | 1998, 2079 |
| AccII | CGCG | 3 cut(s) | 256, 430, 565 |
| AciI | CCGC | 5 cut(s) | 331, 428, 430, 605, 2492 |
| AclWI | GGATC | 7 cut(s) | 561, 603, 743, 756, 1424, 1969, 2048 |
| AcoI | YGGCCR | 2 cut(s) | 483, 1692 |
| AcsI | RAATTY | 8 cut(s) | 927, 1074, 1396, 1501, 1574, 1897, 1921, 2551 |
| AcuI | CTGAAG | 2 cut(s) | 344, 1790 |
| AcyI | GRCGYC | 1 cut(s) | 1869 |
| AdeI | CACNNNGTG | 1 cut(s) | 2262 |
| AfaI | GTAC | 2 cut(s) | 153, 1936 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 309, 345, 497, 802, 1858 |
| AflIII | ACRYGT | 2 cut(s) | 160, 254 |
| AjnI | CCWGG | 1 cut(s) | 480 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 800, 832, 1487, 1519 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 511, 543 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| Alw26I | GTCTC | 6 cut(s) | 55, 245, 1811, 2235, 2553, 2714 |
| Alw44I | GTGCAC | 1 cut(s) | 43 |
| AlwI | GGATC | 7 cut(s) | 561, 603, 743, 756, 1424, 1969, 2048 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1612 |
| Ama87I | CYCGRG | 2 cut(s) | 744, 1583 |
| AoxI | GGCC | 4 cut(s) | 477, 483, 1692, 2265 |
| ApaLI | GTGCAC | 1 cut(s) | 43 |
| ApeKI | GCWGC | 7 cut(s) | 170, 294, 297, 954, 1319, 1588, 1687 |
| ApoI | RAATTY | 8 cut(s) | 927, 1074, 1396, 1501, 1574, 1897, 1921, 2551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2588, 2620 |
| AspLEI | GCGC | 1 cut(s) | 565 |
| AspS9I | GGNCC | 6 cut(s) | 220, 328, 478, 1360, 1566, 2265 |
| AsuC2I | CCSGG | 2 cut(s) | 745, 746 |
| AsuHPI | GGTGA | 5 cut(s) | 45, 103, 785, 1007, 1183 |
| AvaI | CYCGRG | 2 cut(s) | 744, 1583 |
| AvaII | GGWCC | 4 cut(s) | 220, 328, 1360, 1566 |
| AxyI | CCTNAGG | 1 cut(s) | 514 |
| BaeGI | GKGCMC | 2 cut(s) | 47, 1663 |
| BalI | TGGCCA | 1 cut(s) | 485 |
| BamHI | GGATCC | 1 cut(s) | 748 |
| BanII | GRGCYC | 1 cut(s) | 2021 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2328, 2360 |
| BbsI | GAAGAC | 1 cut(s) | 2436 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BbvI | GCAGC | 7 cut(s) | 182, 281, 309, 941, 1331, 1575, 1674 |
| BceAI | ACGGC | 1 cut(s) | 1788 |
| BciT130I | CCWGG | 1 cut(s) | 482 |
| BciVI | GTATCC | 1 cut(s) | 2488 |
| BclI | TGATCA | 2 cut(s) | 1254, 2143 |
| BcnI | CCSGG | 2 cut(s) | 745, 746 |
| BcoDI | GTCTC | 6 cut(s) | 55, 245, 1811, 2235, 2553, 2714 |
| BfaI | CTAG | 5 cut(s) | 791, 1286, 1451, 1793, 2120 |
| BfmI | CTRYAG | 3 cut(s) | 295, 1596, 1647 |
| BfuAI | ACCTGC | 1 cut(s) | 550 |
| BfuI | GTATCC | 1 cut(s) | 2488 |
| BglII | AGATCT | 5 cut(s) | 106, 1204, 1734, 2206, 2403 |
| BisI | GCNGC | 8 cut(s) | 171, 295, 298, 606, 955, 1320, 1589, 1688 |
| BlsI | GCNGC | 8 cut(s) | 172, 296, 299, 607, 956, 1321, 1590, 1689 |
| Bme1390I | CCNGG | 3 cut(s) | 482, 745, 746 |
| Bme18I | GGWCC | 4 cut(s) | 220, 328, 1360, 1566 |
| BmeT110I | CYCGRG | 2 cut(s) | 744, 1583 |
| BmgT120I | GGNCC | 6 cut(s) | 220, 328, 478, 1360, 1566, 2265 |
| BmiI | GGNNCC | 4 cut(s) | 366, 750, 1466, 1567 |
| BmrFI | CCNGG | 3 cut(s) | 482, 745, 746 |
| BmsI | GCATC | 7 cut(s) | 866, 907, 1090, 1522, 1876, 2050, 2155 |
| BoxI | GACNNNNGTC | 1 cut(s) | 893 |
| BpiI | GAAGAC | 1 cut(s) | 2436 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2548, 2580, 2550, 2582 |
| BpmI | CTGGAG | 3 cut(s) | 1703, 1759, 2302 |
| BpuEI | CTTGAG | 5 cut(s) | 361, 1224, 1706, 2479, 2555 |
| BpuMI | CCSGG | 2 cut(s) | 745, 746 |
| Bsa29I | ATCGAT | 1 cut(s) | 2707 |
| BsaAI | YACGTR | 1 cut(s) | 842 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1259 |
| BsaHI | GRCGYC | 1 cut(s) | 1869 |
| BsaI | GGTCTC | 1 cut(s) | 2553 |
| BsaJI | CCNNGG | 8 cut(s) | 428, 474, 480, 729, 744, 1167, 1264, 2200 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 309, 345, 497, 802, 1858 |
| Bse118I | RCCGGY | 1 cut(s) | 1690 |
| Bse1I | ACTGG | 5 cut(s) | 218, 1634, 1686, 2285, 2370 |
| Bse21I | CCTNAGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 2 cut(s) | 103, 1509 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1259 |
| BseBI | CCWGG | 1 cut(s) | 482 |
| BseCI | ATCGAT | 1 cut(s) | 2707 |
| BseDI | CCNNGG | 8 cut(s) | 428, 474, 480, 729, 744, 1167, 1264, 2200 |
| BseJI | GATNNNNATC | 1 cut(s) | 1259 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 309, 345, 497, 802, 1858 |
| BseMI | GCAATG | 2 cut(s) | 103, 1509 |
| BseMII | CTCAG | 2 cut(s) | 1022, 1901 |
| BseNI | ACTGG | 5 cut(s) | 218, 1634, 1686, 2285, 2370 |
| BseRI | GAGGAG | 2 cut(s) | 414, 499 |
| BseSI | GKGCMC | 2 cut(s) | 47, 1663 |
| BseXI | GCAGC | 7 cut(s) | 182, 281, 309, 941, 1331, 1575, 1674 |
| BsgI | GTGCAG | 1 cut(s) | 528 |
| Bsh1236I | CGCG | 3 cut(s) | 256, 430, 565 |
| BshFI | GGCC | 4 cut(s) | 479, 485, 1694, 2267 |
| BshVI | ATCGAT | 1 cut(s) | 2707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BsiHKCI | CYCGRG | 2 cut(s) | 744, 1583 |
| BsiSI | CCGG | 2 cut(s) | 745, 1691 |
| BslFI | GGGAC | 4 cut(s) | 661, 727, 1018, 2302 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 309, 345, 497, 802, 1858 |
| BsmAI | GTCTC | 6 cut(s) | 55, 245, 1811, 2235, 2553, 2714 |
| BsmBI | CGTCTC | 2 cut(s) | 245, 1811 |
| BsmFI | GGGAC | 4 cut(s) | 661, 727, 1018, 2302 |
| BsmI | GAATGC | 1 cut(s) | 1889 |
| BsnI | GGCC | 4 cut(s) | 479, 485, 1694, 2267 |
| Bso31I | GGTCTC | 1 cut(s) | 2553 |
| BsoBI | CYCGRG | 2 cut(s) | 744, 1583 |
| Bsp1286I | GDGCHC | 3 cut(s) | 47, 1663, 2021 |
| Bsp1407I | TGTACA | 1 cut(s) | 1934 |
| Bsp19I | CCATGG | 1 cut(s) | 729 |
| BspACI | CCGC | 5 cut(s) | 331, 428, 430, 605, 2492 |
| BspANI | GGCC | 4 cut(s) | 479, 485, 1694, 2267 |
| BspCNI | CTCAG | 2 cut(s) | 1021, 1902 |
| BspDI | ATCGAT | 1 cut(s) | 2707 |
| BspFNI | CGCG | 3 cut(s) | 256, 430, 565 |
| BspHI | TCATGA | 2 cut(s) | 687, 1842 |
| BspLI | GGNNCC | 4 cut(s) | 366, 750, 1466, 1567 |
| BspMAI | CTGCAG | 1 cut(s) | 299 |
| BspMI | ACCTGC | 1 cut(s) | 550 |
| BspPI | GGATC | 7 cut(s) | 561, 603, 743, 756, 1424, 1969, 2048 |
| BspTNI | GGTCTC | 1 cut(s) | 2553 |
| BsrDI | GCAATG | 2 cut(s) | 103, 1509 |
| BsrFI | RCCGGY | 1 cut(s) | 1690 |
| BsrGI | TGTACA | 1 cut(s) | 1934 |
| BsrI | ACTGG | 5 cut(s) | 218, 1634, 1686, 2285, 2370 |
| BssAI | RCCGGY | 1 cut(s) | 1690 |
| BssECI | CCNNGG | 8 cut(s) | 428, 474, 480, 729, 744, 1167, 1264, 2200 |
| BssNI | GRCGYC | 1 cut(s) | 1869 |
| BssT1I | CCWWGG | 4 cut(s) | 729, 1167, 1264, 2200 |
| Bst2UI | CCWGG | 1 cut(s) | 482 |
| Bst4CI | ACNGT | 9 cut(s) | 49, 69, 115, 652, 670, 1651, 1836, 1878, 2624 |
| Bst6I | CTCTTC | 1 cut(s) | 714 |
| BstACI | GRCGYC | 1 cut(s) | 1869 |
| BstAUI | TGTACA | 1 cut(s) | 1934 |
| BstBAI | YACGTR | 1 cut(s) | 842 |
| BstC8I | GCNNGC | 1 cut(s) | 1692 |
| BstDEI | CTNAG | 6 cut(s) | 514, 867, 1008, 1910, 2443, 2575 |
| BstDSI | CCRYGG | 2 cut(s) | 428, 729 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 343 |
| BstFNI | CGCG | 3 cut(s) | 256, 430, 565 |
| BstHHI | GCGC | 1 cut(s) | 565 |
| BstMAI | GTCTC | 6 cut(s) | 55, 245, 1811, 2235, 2553, 2714 |
| BstNI | CCWGG | 1 cut(s) | 482 |
| BstNSI | RCATGY | 1 cut(s) | 294 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 893 |
| BstSCI | CCNGG | 3 cut(s) | 480, 743, 744 |
| BstSFI | CTRYAG | 3 cut(s) | 295, 1596, 1647 |
| BstSLI | GKGCMC | 2 cut(s) | 47, 1663 |
| BstUI | CGCG | 3 cut(s) | 256, 430, 565 |
| BstV1I | GCAGC | 7 cut(s) | 182, 281, 309, 941, 1331, 1575, 1674 |
| BstV2I | GAAGAC | 1 cut(s) | 2436 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2275 |
| Bsu15I | ATCGAT | 1 cut(s) | 2707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 514 |
| BsuI | GTATCC | 1 cut(s) | 2488 |
| BsuRI | GGCC | 4 cut(s) | 479, 485, 1694, 2267 |
| BsuTUI | ATCGAT | 1 cut(s) | 2707 |
| BtgI | CCRYGG | 2 cut(s) | 428, 729 |
| BveI | ACCTGC | 1 cut(s) | 550 |
| Cac8I | GCNNGC | 1 cut(s) | 1692 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1612 |
| CciI | TCATGA | 2 cut(s) | 687, 1842 |
| CfoI | GCGC | 1 cut(s) | 565 |
| Cfr10I | RCCGGY | 1 cut(s) | 1690 |
| Cfr13I | GGNCC | 6 cut(s) | 220, 328, 478, 1360, 1566, 2265 |
| Cfr42I | CCGCGG | 1 cut(s) | 431 |
| Cfr9I | CCCGGG | 1 cut(s) | 744 |
| ClaI | ATCGAT | 1 cut(s) | 2707 |
| CseI | GACGC | 4 cut(s) | 262, 554, 1580, 2666 |
| Csp6I | GTAC | 2 cut(s) | 152, 1935 |
| CviQI | GTAC | 2 cut(s) | 152, 1935 |
| DdeI | CTNAG | 6 cut(s) | 514, 867, 1008, 1910, 2443, 2575 |
| DraIII | CACNNNGTG | 1 cut(s) | 2262 |
| EaeI | YGGCCR | 2 cut(s) | 483, 1692 |
| Eam1104I | CTCTTC | 1 cut(s) | 714 |
| EarI | CTCTTC | 1 cut(s) | 714 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 4 cut(s) | 729, 1167, 1264, 2200 |
| Eco24I | GRGCYC | 1 cut(s) | 2021 |
| Eco31I | GGTCTC | 1 cut(s) | 2553 |
| Eco32I | GATATC | 2 cut(s) | 943, 1474 |
| Eco47I | GGWCC | 4 cut(s) | 220, 328, 1360, 1566 |
| Eco57I | CTGAAG | 2 cut(s) | 344, 1790 |
| Eco81I | CCTNAGG | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 2 cut(s) | 744, 1583 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 343 |
| EcoO109I | RGGNCCY | 2 cut(s) | 478, 1360 |
| EcoRII | CCWGG | 1 cut(s) | 480 |
| EcoRV | GATATC | 2 cut(s) | 943, 1474 |
| EcoT14I | CCWWGG | 4 cut(s) | 729, 1167, 1264, 2200 |
| EcoT22I | ATGCAT | 1 cut(s) | 1891 |
| EcoT38I | GRGCYC | 1 cut(s) | 2021 |
| ErhI | CCWWGG | 4 cut(s) | 729, 1167, 1264, 2200 |
| Esp3I | CGTCTC | 2 cut(s) | 245, 1811 |
| FaqI | GGGAC | 4 cut(s) | 661, 727, 1018, 2302 |
| FauNDI | CATATG | 1 cut(s) | 2084 |
| FbaI | TGATCA | 2 cut(s) | 1254, 2143 |
| FblI | GTMKAC | 2 cut(s) | 1998, 2079 |
| Fnu4HI | GCNGC | 8 cut(s) | 171, 295, 298, 606, 955, 1320, 1589, 1688 |
| FriOI | GRGCYC | 1 cut(s) | 2021 |
| Fsp4HI | GCNGC | 8 cut(s) | 171, 295, 298, 606, 955, 1320, 1589, 1688 |
| FspBI | CTAG | 5 cut(s) | 791, 1286, 1451, 1793, 2120 |
| GlaI | GCGC | 1 cut(s) | 564 |
| GluI | GCNGC | 8 cut(s) | 171, 295, 298, 606, 955, 1320, 1589, 1688 |
| GsuI | CTGGAG | 3 cut(s) | 1703, 1759, 2302 |
| HaeIII | GGCC | 4 cut(s) | 479, 485, 1694, 2267 |
| HapII | CCGG | 2 cut(s) | 745, 1691 |
| HgaI | GACGC | 4 cut(s) | 262, 554, 1580, 2666 |
| HhaI | GCGC | 1 cut(s) | 565 |
| Hin1I | GRCGYC | 1 cut(s) | 1869 |
| Hin6I | GCGC | 1 cut(s) | 563 |
| HinP1I | GCGC | 1 cut(s) | 563 |
| HincII | GTYRAC | 1 cut(s) | 2080 |
| HindII | GTYRAC | 1 cut(s) | 2080 |
| HindIII | AAGCTT | 2 cut(s) | 2387, 2531 |
| HpaII | CCGG | 2 cut(s) | 745, 1691 |
| HphI | GGTGA | 5 cut(s) | 45, 103, 785, 1007, 1183 |
| Hpy166II | GTNNAC | 7 cut(s) | 45, 229, 1236, 1445, 1999, 2080, 2584 |
| Hpy8I | GTNNAC | 7 cut(s) | 45, 229, 1236, 1445, 1999, 2080, 2584 |
| Hpy99I | CGWCG | 1 cut(s) | 2252 |
| HpyAV | CCTTC | 7 cut(s) | 112, 274, 319, 386, 491, 1546, 2231 |
| HpyCH4III | ACNGT | 9 cut(s) | 49, 69, 115, 652, 670, 1651, 1836, 1878, 2624 |
| HpyCH4IV | ACGT | 4 cut(s) | 160, 841, 987, 1869 |
| HpyF3I | CTNAG | 6 cut(s) | 514, 867, 1008, 1910, 2443, 2575 |
| HpySE526I | ACGT | 4 cut(s) | 160, 841, 987, 1869 |
| Hsp92I | GRCGYC | 1 cut(s) | 1869 |
| HspAI | GCGC | 1 cut(s) | 563 |
| KroI | GCCGGC | 1 cut(s) | 1690 |
| KroNI | GCCGGC | 1 cut(s) | 1692 |
| Ksp22I | TGATCA | 2 cut(s) | 1254, 2143 |
| KspI | CCGCGG | 1 cut(s) | 431 |
| LmnI | GCTCC | 5 cut(s) | 305, 370, 427, 1684, 2712 |
| Lsp1109I | GCAGC | 7 cut(s) | 182, 281, 309, 941, 1331, 1575, 1674 |
| LweI | GCATC | 7 cut(s) | 866, 907, 1090, 1522, 1876, 2050, 2155 |
| MaeI | CTAG | 5 cut(s) | 791, 1286, 1451, 1793, 2120 |
| MaeII | ACGT | 4 cut(s) | 160, 841, 987, 1869 |
| MaeIII | GTNAC | 6 cut(s) | 121, 670, 1326, 1836, 2450, 2604 |
| MfeI | CAATTG | 3 cut(s) | 921, 1956, 2352 |
| MhlI | GDGCHC | 3 cut(s) | 47, 1663, 2021 |
| MlsI | TGGCCA | 1 cut(s) | 485 |
| MluI | ACGCGT | 1 cut(s) | 254 |
| MluNI | TGGCCA | 1 cut(s) | 485 |
| MlyI | GAGTC | 2 cut(s) | 1000, 2612 |
| MmeI | TCCRAC | 5 cut(s) | 198, 1146, 1633, 2008, 2269 |
| Mox20I | TGGCCA | 1 cut(s) | 485 |
| Mph1103I | ATGCAT | 1 cut(s) | 1891 |
| MroNI | GCCGGC | 1 cut(s) | 1690 |
| MscI | TGGCCA | 1 cut(s) | 485 |
| MseI | TTAA | 8 cut(s) | 84, 1299, 1548, 1919, 1944, 1979, 2400, 2540 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1793 |
| Msp20I | TGGCCA | 1 cut(s) | 485 |
| MspA1I | CMGCKG | 1 cut(s) | 430 |
| MspI | CCGG | 2 cut(s) | 745, 1691 |
| MspR9I | CCNGG | 3 cut(s) | 482, 745, 746 |
| MunI | CAATTG | 3 cut(s) | 921, 1956, 2352 |
| Mva1269I | GAATGC | 1 cut(s) | 1889 |
| MvaI | CCWGG | 1 cut(s) | 482 |
| MvnI | CGCG | 3 cut(s) | 256, 430, 565 |
| NaeI | GCCGGC | 1 cut(s) | 1692 |
| NciI | CCSGG | 2 cut(s) | 745, 746 |
| NcoI | CCATGG | 1 cut(s) | 729 |
| NdeI | CATATG | 1 cut(s) | 2084 |
| NgoMIV | GCCGGC | 1 cut(s) | 1690 |
| NlaIV | GGNNCC | 4 cut(s) | 366, 750, 1466, 1567 |
| NmeAIII | GCCGAG | 1 cut(s) | 581 |
| NmuCI | GTSAC | 2 cut(s) | 1836, 2604 |
| NsiI | ATGCAT | 1 cut(s) | 1891 |
| NspI | RCATGY | 1 cut(s) | 294 |
| PaeR7I | CTCGAG | 1 cut(s) | 1583 |
| PagI | TCATGA | 2 cut(s) | 687, 1842 |
| PaqCI | CACCTGC | 1 cut(s) | 550 |
| PctI | GAATGC | 1 cut(s) | 1889 |
| PdiI | GCCGGC | 1 cut(s) | 1692 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 309 |
| PkrI | GCNGC | 8 cut(s) | 172, 296, 299, 607, 956, 1321, 1590, 1689 |
| PleI | GAGTC | 2 cut(s) | 1000, 2611 |
| PpsI | GAGTC | 2 cut(s) | 1000, 2611 |
| Ppu21I | YACGTR | 1 cut(s) | 842 |
| PpuMI | RGGWCCY | 1 cut(s) | 1360 |
| PshAI | GACNNNNGTC | 1 cut(s) | 893 |
| PsiI | TTATAA | 1 cut(s) | 1367 |
| Psp5II | RGGWCCY | 1 cut(s) | 1360 |
| Psp6I | CCWGG | 1 cut(s) | 480 |
| PspGI | CCWGG | 1 cut(s) | 480 |
| PspN4I | GGNNCC | 4 cut(s) | 366, 750, 1466, 1567 |
| PspPI | GGNCC | 6 cut(s) | 220, 328, 478, 1360, 1566, 2265 |
| PspPPI | RGGWCCY | 1 cut(s) | 1360 |
| PstI | CTGCAG | 1 cut(s) | 299 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1612 |
| RsaI | GTAC | 2 cut(s) | 153, 1936 |
| RsaNI | GTAC | 2 cut(s) | 152, 1935 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1793 |
| SacII | CCGCGG | 1 cut(s) | 431 |
| SalI | GTCGAC | 1 cut(s) | 2078 |
| SaqAI | TTAA | 8 cut(s) | 84, 1299, 1548, 1919, 1944, 1979, 2400, 2540 |
| SatI | GCNGC | 8 cut(s) | 171, 295, 298, 606, 955, 1320, 1589, 1688 |
| Sau96I | GGNCC | 6 cut(s) | 220, 328, 478, 1360, 1566, 2265 |
| SchI | GAGTC | 2 cut(s) | 1000, 2612 |
| ScrFI | CCNGG | 3 cut(s) | 482, 745, 746 |
| SduI | GDGCHC | 3 cut(s) | 47, 1663, 2021 |
| SfaNI | GCATC | 7 cut(s) | 866, 907, 1090, 1522, 1876, 2050, 2155 |
| SfcI | CTRYAG | 3 cut(s) | 295, 1596, 1647 |
| Sfr274I | CTCGAG | 1 cut(s) | 1583 |
| Sfr303I | CCGCGG | 1 cut(s) | 431 |
| SgrBI | CCGCGG | 1 cut(s) | 431 |
| SinI | GGWCC | 4 cut(s) | 220, 328, 1360, 1566 |
| SlaI | CTCGAG | 1 cut(s) | 1583 |
| SmaI | CCCGGG | 1 cut(s) | 746 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1793 |
| SmlI | CTYRAG | 6 cut(s) | 340, 1239, 1583, 1721, 2458, 2534 |
| SmoI | CTYRAG | 6 cut(s) | 340, 1239, 1583, 1721, 2458, 2534 |
| SsiI | CCGC | 5 cut(s) | 331, 428, 430, 605, 2492 |
| SspI | AATATT | 3 cut(s) | 458, 1371, 1813 |
| SspMI | CTAG | 5 cut(s) | 791, 1286, 1451, 1793, 2120 |
| StyD4I | CCNGG | 3 cut(s) | 480, 743, 744 |
| StyI | CCWWGG | 4 cut(s) | 729, 1167, 1264, 2200 |
| TaaI | ACNGT | 9 cut(s) | 49, 69, 115, 652, 670, 1651, 1836, 1878, 2624 |
| TaiI | ACGT | 4 cut(s) | 163, 844, 990, 1872 |
| TaqI | TCGA | 8 cut(s) | 278, 316, 1584, 1704, 2079, 2193, 2227, 2707 |
| TatI | WGTACW | 1 cut(s) | 1934 |
| TauI | GCSGC | 1 cut(s) | 608 |
| Tru1I | TTAA | 8 cut(s) | 84, 1299, 1548, 1919, 1944, 1979, 2400, 2540 |
| Tru9I | TTAA | 8 cut(s) | 84, 1299, 1548, 1919, 1944, 1979, 2400, 2540 |
| TseFI | GTSAC | 2 cut(s) | 1836, 2604 |
| TseI | GCWGC | 7 cut(s) | 170, 294, 297, 954, 1319, 1588, 1687 |
| Tsp45I | GTSAC | 2 cut(s) | 1836, 2604 |
| TspGWI | ACGGA | 1 cut(s) | 1477 |
| TspMI | CCCGGG | 1 cut(s) | 744 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 309 |
| VneI | GTGCAC | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 4 cut(s) | 220, 328, 1360, 1566 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 343 |
| XapI | RAATTY | 8 cut(s) | 927, 1074, 1396, 1501, 1574, 1897, 1921, 2551 |
| XceI | RCATGY | 1 cut(s) | 294 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 478 |
| XhoI | CTCGAG | 1 cut(s) | 1583 |
| XmaI | CCCGGG | 1 cut(s) | 744 |
| XmiI | GTMKAC | 2 cut(s) | 1998, 2079 |
| XspI | CTAG | 5 cut(s) | 791, 1286, 1451, 1793, 2120 |
| ZraI | GACGTC | 1 cut(s) | 1870 |
| Zsp2I | ATGCAT | 1 cut(s) | 1891 |