FvH4_6g02713

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000203
Physical Location & Seq
Reverse (-)
1559116 .. 1560790
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02713.t1

Sequence Viewer

Length: 1164 bp
ATGGCAGATATTATCACTACAGTTGTTGGAAAGTTAGCAGAGTACACAGTCGCACCTCTCCTGCGACAGTTTGGTTATCTGATTAACTACAAGAGCAATGTTGAAGATCTCACCGAGAAGGTTAACACTCTGATTGCCAAAAGAGATGCGGTACAATTACGAGTGGATGGAGCAAAGAGGAACTTGGAGGATATTCTTCCCGACGTTCAGAAATGGTTGGAACGAGTGCAGCAGACCATACAAGAAAAGGAGACATGTTTTGAAGAAGGAAGAGTAGCCAAGGCAACAACATGCTGCAGCTCCAATGGATGGTGTCCAAATCTGAAGGGTCGTCATTCCTTGAGTAGGAAAGCAGCGAAGATGGCTGAAAAGCTTGATAATCTTATTACAGATGGAAATTTCACCACCATATCAAGTCCTGCTCGTCCGCCGAAGCTTCATTATCCTGCCATACCATATTATGGGGATTCCACTCCACATGAAGGGGCTAGCTCCTCCTCTGGAACATCCAAACCTGCTGAAGTACATGTGCCTATGGATCTCTCTGAGCGTCTGGAATACAGGCTGCCTTATACAAAGGATCTCTTGACGGCTCTGCAAGATGACAAGATCAGCATGATTGGCATTTCTGGGACATTCAGAGAGATAGATACGGTAACAACCAAAGAGTTCACCAAAAGAATGAAACACAGAAATCTCTTTGACGAGGTTGTGATGGCAGTTGTGTCTCAGCATCCAGACTTGAAACGAATACAAGATGAGATTGCAGAAATGCTGGACCTGAAATTAGAGGAGAATGGGAGTTTGGTGGAACGGGCTCTTTTACCGGCATCAGGTTCTAAGAGGATTCTTGTAATACTGACTGATGTCTGTGGAATACTTGATTTGGATGCAATTGGAATTCCTCATCTTGATATCATGGAAAGCTGCAAGATCGTGTTGATTTCAGAACTACAAGATGTGTTTGGTGAAATGGAGACTCAGAGCAATTTCAGATTGATATTACATTCCACTCCCAGAGCAAGACCTGTTGAGTTTGAGTCAAGAATTTCAGTCATCAGAGATAACAAGTTCTTGCTGAATGTGGTGGTTTACCCGTTGCAATTTCTACAGTTGGAAGGGCACTACAAGGTGAAAGTATTTCAAGCTGGAGAAATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

388

Amino Acids

43.61

Weight (kDa)

5.99

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 217 - 329 5.7e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 523
AccB7I CCANNNNNTGG 2 cut(s) 309, 461
AciI CCGC 2 cut(s) 149, 428
AclWI GGATC 2 cut(s) 546, 588
AcsI RAATTY 3 cut(s) 397, 900, 1047
AcuI CTGAAG 2 cut(s) 344, 540
AfaI GTAC 3 cut(s) 44, 153, 525
AfiI CCNNNNNNNGG 5 cut(s) 309, 345, 461, 482, 833
AflIII ACRYGT 2 cut(s) 254, 526
AgsI TTSAA 4 cut(s) 104, 263, 745, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 300, 373, 436, 492, 927, 1148
AluI AGCT 6 cut(s) 300, 373, 436, 492, 927, 1148
Alw26I GTCTC 3 cut(s) 245, 732, 971
AlwI GGATC 2 cut(s) 546, 588
ApeKI GCWGC 6 cut(s) 229, 294, 297, 353, 565, 927
ApoI RAATTY 3 cut(s) 397, 900, 1047
AspS9I GGNCC 1 cut(s) 778
AsuHPI GGTGA 5 cut(s) 103, 394, 664, 980, 1144
AsuNHI GCTAGC 1 cut(s) 488
AvaII GGWCC 1 cut(s) 778
BaeGI GKGCMC 1 cut(s) 1125
BanII GRGCYC 1 cut(s) 820
BbvI GCAGC 6 cut(s) 241, 281, 309, 365, 552, 914
BccI CCATC 5 cut(s) 161, 303, 355, 386, 709
BceAI ACGGC 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 245, 732, 971
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 3 cut(s) 18, 295, 1109
BfuAI ACCTGC 1 cut(s) 523
BglII AGATCT 1 cut(s) 106
BisI GCNGC 6 cut(s) 230, 295, 298, 354, 566, 928
BlsI GCNGC 6 cut(s) 231, 296, 299, 355, 567, 929
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 778
BmsI GCATC 4 cut(s) 136, 742, 839, 880
BmtI GCTAGC 1 cut(s) 492
BoxI GACNNNNGTC 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 345, 461, 482, 833
Bse118I RCCGGY 1 cut(s) 826
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 5 cut(s) 172, 314, 506, 733, 895
BseLI CCNNNNNNNGG 5 cut(s) 309, 345, 461, 482, 833
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 3 cut(s) 537, 743, 995
BseRI GAGGAG 3 cut(s) 484, 487, 806
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 6 cut(s) 241, 281, 309, 365, 552, 914
BsgI GTGCAG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 5 cut(s) 309, 345, 461, 482, 833
BsmAI GTCTC 3 cut(s) 245, 732, 971
BsmFI GGGAC 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 820, 1125
Bsp143I GATC 5 cut(s) 106, 538, 580, 609, 933
BspACI CCGC 2 cut(s) 149, 428
BspCNI CTCAG 3 cut(s) 538, 742, 994
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 523
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 2 cut(s) 546, 588
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 826
BssAI RCCGGY 1 cut(s) 826
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 5 cut(s) 106, 538, 580, 609, 933
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 5 cut(s) 22, 49, 69, 655, 1113
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 4 cut(s) 546, 729, 840, 981
BstENI CCTNNNNNAGG 1 cut(s) 343
BstF5I GGATG 5 cut(s) 172, 314, 506, 733, 895
BstKTI GATC 5 cut(s) 109, 541, 583, 612, 936
BstMAI GTCTC 3 cut(s) 245, 732, 971
BstMBI GATC 5 cut(s) 106, 538, 580, 609, 933
BstMWI GCNNNNNNNGC 2 cut(s) 362, 621
BstNSI RCATGY 3 cut(s) 258, 294, 530
BstPAI GACNNNNGTC 1 cut(s) 866
BstSFI CTRYAG 3 cut(s) 18, 295, 1109
BstSLI GKGCMC 1 cut(s) 1125
BstV1I GCAGC 6 cut(s) 241, 281, 309, 365, 552, 914
BstX2I RGATCY 3 cut(s) 106, 538, 580
BstYI RGATCY 3 cut(s) 106, 538, 580
BtsCI GGATG 5 cut(s) 172, 314, 506, 733, 895
BtsIMutI CAGTG 1 cut(s) 1159
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 778
CseI GACGC 1 cut(s) 539
Csp6I GTAC 3 cut(s) 43, 152, 524
CviAII CATG 6 cut(s) 255, 291, 479, 527, 616, 919
CviQI GTAC 3 cut(s) 43, 152, 524
DdeI CTNAG 4 cut(s) 546, 729, 840, 981
DpnI GATC 5 cut(s) 108, 540, 582, 611, 935
DpnII GATC 5 cut(s) 106, 538, 580, 609, 933
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 820
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 344, 540
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 900
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 258, 294, 482, 530, 619, 922
FalI AAGNNNNNCTT 4 cut(s) 167, 199, 569, 601
FaqI GGGAC 1 cut(s) 646
FatI CATG 6 cut(s) 254, 290, 478, 526, 615, 918
Fnu4HI GCNGC 6 cut(s) 230, 295, 298, 354, 566, 928
FokI GGATG 5 cut(s) 179, 321, 493, 720, 902
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 6 cut(s) 230, 295, 298, 354, 566, 928
FspBI CTAG 1 cut(s) 489
GluI GCNGC 6 cut(s) 230, 295, 298, 354, 566, 928
HapII CCGG 1 cut(s) 827
HgaI GACGC 1 cut(s) 539
Hin1II CATG 6 cut(s) 258, 294, 482, 530, 619, 922
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 371, 434
HinfI GANTC 4 cut(s) 467, 847, 979, 1040
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 827
HphI GGTGA 5 cut(s) 103, 394, 664, 980, 1144
Hpy166II GTNNAC 4 cut(s) 45, 124, 672, 1093
Hpy188III TCNNGA 7 cut(s) 200, 501, 554, 586, 737, 911, 1044
Hpy8I GTNNAC 4 cut(s) 45, 124, 672, 1093
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 5 cut(s) 112, 260, 319, 476, 1112
HpyCH4III ACNGT 5 cut(s) 22, 49, 69, 655, 1113
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 8 cut(s) 229, 297, 598, 767, 893, 930, 1102, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 621
HpyF3I CTNAG 4 cut(s) 546, 729, 840, 981
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 258, 294, 482, 530, 619, 922
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 5 cut(s) 106, 538, 580, 609, 933
LmnI GCTCC 3 cut(s) 170, 305, 497
Lsp1109I GCAGC 6 cut(s) 241, 281, 309, 365, 552, 914
LweI GCATC 4 cut(s) 136, 742, 839, 880
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 655
MalI GATC 5 cut(s) 108, 540, 582, 611, 935
MboI GATC 5 cut(s) 106, 538, 580, 609, 933
MboII GAAGA 5 cut(s) 116, 188, 275, 282, 370
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 3 cut(s) 106, 538, 580
MhlI GDGCHC 2 cut(s) 820, 1125
MluCI AATT 8 cut(s) 155, 397, 785, 894, 900, 988, 1047, 1103
MlyI GAGTC 2 cut(s) 973, 1049
MmeI TCCRAC 3 cut(s) 7, 198, 1095
MnlI CCTC 9 cut(s) 66, 171, 181, 505, 508, 700, 784, 837, 915
MseI TTAA 2 cut(s) 84, 123
MspI CCGG 1 cut(s) 827
MunI CAATTG 1 cut(s) 894
MwoI GCNNNNNNNGC 2 cut(s) 362, 621
NdeII GATC 5 cut(s) 106, 538, 580, 609, 933
NheI GCTAGC 1 cut(s) 488
NlaIII CATG 6 cut(s) 258, 294, 482, 530, 619, 922
NspI RCATGY 3 cut(s) 258, 294, 530
PciI ACATGT 2 cut(s) 254, 526
PfeI GAWTC 2 cut(s) 467, 847
PflMI CCANNNNNTGG 2 cut(s) 309, 461
PkrI GCNGC 6 cut(s) 231, 296, 299, 355, 567, 929
PleI GAGTC 2 cut(s) 973, 1048
PpsI GAGTC 2 cut(s) 973, 1048
PscI ACATGT 2 cut(s) 254, 526
PshAI GACNNNNGTC 1 cut(s) 866
PspPI GGNCC 1 cut(s) 778
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 3 cut(s) 106, 538, 580
RsaI GTAC 3 cut(s) 44, 153, 525
RsaNI GTAC 3 cut(s) 43, 152, 524
SaqAI TTAA 2 cut(s) 84, 123
SatI GCNGC 6 cut(s) 230, 295, 298, 354, 566, 928
Sau3AI GATC 5 cut(s) 106, 538, 580, 609, 933
Sau96I GGNCC 1 cut(s) 778
SchI GAGTC 2 cut(s) 973, 1049
SduI GDGCHC 2 cut(s) 820, 1125
SfaNI GCATC 4 cut(s) 136, 742, 839, 880
SfcI CTRYAG 3 cut(s) 18, 295, 1109
SinI GGWCC 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 8 cut(s) 155, 397, 785, 894, 900, 988, 1047, 1103
SsiI CCGC 2 cut(s) 149, 428
SspMI CTAG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 5 cut(s) 22, 49, 69, 655, 1113
TaiI ACGT 1 cut(s) 207
TasI AATT 8 cut(s) 155, 397, 785, 894, 900, 988, 1047, 1103
TatI WGTACW 2 cut(s) 42, 523
TfiI GAWTC 2 cut(s) 467, 847
Tru1I TTAA 2 cut(s) 84, 123
Tru9I TTAA 2 cut(s) 84, 123
TseI GCWGC 6 cut(s) 229, 294, 297, 353, 565, 927
TspDTI ATGAA 3 cut(s) 428, 495, 698
Van91I CCANNNNNTGG 2 cut(s) 309, 461
VpaK11BI GGWCC 1 cut(s) 778
XagI CCTNNNNNAGG 1 cut(s) 343
XapI RAATTY 3 cut(s) 397, 900, 1047
XceI RCATGY 3 cut(s) 258, 294, 530
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.