RLG00000003533

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000203
Physical Location & Seq
Reverse (-)
49752881 .. 49756995
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003533

Sequence Viewer

Length: 366 bp
ATGAAGAAGACTATTAAAATGGAGATTCTTGTTGCAATTGCCGGAAAACTTGCCGAGTACACAGTTGCACCAATTGGACGTCAAGTGGGTTATCTAGCTCACTACAAAAGCAACTATCAAAACCTCCTGACCAAGGTTGAAGACCTGCGTGGTGCCAGAGACGAGGTTCAACAAAAGGCTGATGAAGTTGAGAGCAGCGGTAAAAGAATCTCGACTAGTGTCCGGAAGTGGAAGACAAGACTGAGCAAGAAATCAACAATATTGGTGAAAGGAATTGTTGAGCTCCTTGGAAAAAAGGAGTTTTCCAATTTTGCATTTAATGTTCGCCCACAAGAGGTTCATAACATGAATCTATGTTATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

9.92

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 222
AciI CCGC 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 133, 334
AgsI TTSAA 2 cut(s) 140, 170
AhlI ACTAGT 1 cut(s) 215
AluBI AGCT 2 cut(s) 98, 283
AluI AGCT 2 cut(s) 98, 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 277
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 3 cut(s) 14, 147, 239
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 95, 216
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 218
BpiI GAAGAC 3 cut(s) 14, 147, 239
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 132, 286
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 334
BseAI TCCGGA 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 132, 286
BseLI CCNNNNNNNGG 2 cut(s) 133, 334
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 42, 223
BslI CCNNNNNNNGG 2 cut(s) 133, 334
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 222
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 234
BspEI TCCGGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 132, 286
BssNI GRCGYC 1 cut(s) 79
BssT1I CCWWGG 2 cut(s) 132, 286
Bst4CI ACNGT 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 3 cut(s) 14, 147, 239
BveI ACCTGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 346
CviJI RGCY 3 cut(s) 98, 179, 283
CviKI_1 RGCY 3 cut(s) 98, 179, 283
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 132, 286
Eco24I GRGCYC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 132, 286
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 132, 286
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 349
FaiI YATR 4 cut(s) 342, 347, 355, 360
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 95, 216
GluI GCNGC 1 cut(s) 196
HapII CCGG 2 cut(s) 42, 223
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 1 cut(s) 349
HinfI GANTC 3 cut(s) 25, 207, 349
HpaII CCGG 2 cut(s) 42, 223
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 60
Hpy188III TCNNGA 3 cut(s) 127, 211, 223
Hpy8I GTNNAC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 35, 68, 314
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 1 cut(s) 349
Kpn2I TCCGGA 1 cut(s) 222
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 5 cut(s) 55, 140, 158, 169, 236
Lsp1109I GCAGC 1 cut(s) 207
MaeI CTAG 2 cut(s) 95, 216
MaeII ACGT 1 cut(s) 79
MboII GAAGA 4 cut(s) 16, 19, 152, 244
MfeI CAATTG 2 cut(s) 36, 72
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 36, 72, 273, 307
MnlI CCTC 3 cut(s) 134, 157, 328
MroI TCCGGA 1 cut(s) 222
MseI TTAA 2 cut(s) 15, 318
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 2 cut(s) 42, 223
MunI CAATTG 2 cut(s) 36, 72
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 79
PfeI GAWTC 3 cut(s) 25, 207, 349
PkrI GCNGC 1 cut(s) 197
PshAI GACNNNNGTC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 15, 318
SatI GCNGC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 285
SetI ASST 9 cut(s) 82, 100, 126, 138, 147, 168, 285, 339, 365
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 4 cut(s) 36, 72, 273, 307
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 95, 216
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 2 cut(s) 132, 286
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 212
TasI AATT 4 cut(s) 36, 72, 273, 307
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 3 cut(s) 25, 207, 349
Tru1I TTAA 2 cut(s) 15, 318
Tru9I TTAA 2 cut(s) 15, 318
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 17, 198, 329, 362
XagI CCTNNNNNAGG 1 cut(s) 131
XspI CTAG 2 cut(s) 95, 216
ZraI GACGTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.