RLG00000035492

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000203
Physical Location & Seq
Reverse (-)
67609198 .. 67612111
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035492

Sequence Viewer

Length: 624 bp
ATGAAGTCTAGATACCACCATGATCATGTTACGTGTGAATGGACAGTGAAACCGATTGGGAGACAGTTGAGTTATGTGTTTAACTACAAGAGCAACATTGAGGATCTCACCGGACAGGTTCGGGAATTGCGTCATAAAAGAGATGGAGTGGACCTAGAGGTGAAACCTACAAGAGAAGCTTTAAAGACTATTGATCTTGGAGTTAATGGCTGGCTCGGTGATGTAGACAAGATCAAAAAAGAAAAGGTGACAAGTTTCAGTGAAGAAACTGTAGCAGCAAAGAGATGTGATGGAAGTTCTCAAGGGGAATCAAATCAATCCAGTTATCATATGCGGCATGGGCGATGCCGCATCGGGAAGACAACATTGATAGGACAAATTTTTGAGAAAGTAAAAGAAGAGTGTCTGTTCGATGAGTATACAAAGGCAACCGTTAAGGAATCTCTTGGCAAAGCTCCTGGCATGATTCAAATTCAAGATGAACTTGCAGAATATCTAGGTCTGATACTTGAAGTAAAAGAGAGAGCTCCAAGAGCAAGTATGCTACGTCAAAGATTATCTGAAGGTAGCAAAAAGATCCTTGTAATGTTAGACAGCATTTCGACAACAACCCCAGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

8.58

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 225, 419
AciI CCGC 2 cut(s) 334, 349
AclWI GGATC 2 cut(s) 111, 571
AcsI RAATTY 2 cut(s) 378, 471
AcuI CTGAAG 1 cut(s) 582
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 3 cut(s) 470, 476, 512
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 3 cut(s) 179, 455, 527
AluI AGCT 3 cut(s) 179, 455, 527
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 111, 571
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 378, 471
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 4 cut(s) 100, 172, 230, 259
AvaII GGWCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 529
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 137, 284
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 3 cut(s) 9, 155, 497
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 3 cut(s) 276, 335, 349
BlsI GCNGC 3 cut(s) 277, 336, 350
Bme1390I CCNGG 1 cut(s) 459
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 335, 360
BpiI GAAGAC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 5 cut(s) 22, 103, 193, 231, 576
BspACI CCGC 2 cut(s) 334, 349
BspPI GGATC 2 cut(s) 111, 571
BsrI ACTGG 1 cut(s) 321
BssMI GATC 5 cut(s) 22, 103, 193, 231, 576
BssNAI GTATAC 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 4 cut(s) 46, 66, 271, 433
Bst6I CTCTTC 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 212
BstKTI GATC 5 cut(s) 25, 106, 196, 234, 579
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 5 cut(s) 22, 103, 193, 231, 576
BstMWI GCNNNNNNNGC 2 cut(s) 340, 533
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 457
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 103, 576
BstYI RGATCY 2 cut(s) 103, 576
BstZ17I GTATAC 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 51, 265
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 119
CviAII CATG 4 cut(s) 20, 26, 338, 463
CviJI RGCY 5 cut(s) 179, 210, 214, 455, 527
CviKI_1 RGCY 5 cut(s) 179, 210, 214, 455, 527
DpnI GATC 5 cut(s) 24, 105, 195, 233, 578
DpnII GATC 5 cut(s) 22, 103, 193, 231, 576
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 529
FaeI CATG 4 cut(s) 23, 29, 341, 466
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 468, 500
FatI CATG 4 cut(s) 19, 25, 337, 462
FauNDI CATATG 1 cut(s) 330
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 2 cut(s) 225, 419
Fnu4HI GCNGC 3 cut(s) 276, 335, 349
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 276, 335, 349
FspBI CTAG 3 cut(s) 9, 155, 497
GluI GCNGC 3 cut(s) 276, 335, 349
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 119
Hin1II CATG 4 cut(s) 23, 29, 341, 466
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 3 cut(s) 308, 440, 466
HpaII CCGG 1 cut(s) 111
HphI GGTGA 4 cut(s) 100, 172, 230, 259
Hpy166II GTNNAC 3 cut(s) 151, 226, 420
Hpy188I TCNGA 2 cut(s) 504, 562
Hpy188III TCNNGA 4 cut(s) 9, 122, 355, 476
Hpy8I GTNNAC 3 cut(s) 151, 226, 420
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 4 cut(s) 46, 66, 271, 433
HpyCH4IV ACGT 2 cut(s) 32, 547
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 533
HpySE526I ACGT 2 cut(s) 32, 547
Hsp92II CATG 4 cut(s) 23, 29, 341, 466
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 22, 103, 193, 231, 576
LmnI GCTCC 2 cut(s) 460, 532
LpnPI CCDG 6 cut(s) 101, 124, 196, 334, 444, 471
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 335, 360
MaeI CTAG 3 cut(s) 9, 155, 497
MaeII ACGT 2 cut(s) 32, 547
MaeIII GTNAC 2 cut(s) 28, 247
MalI GATC 5 cut(s) 24, 105, 195, 233, 578
MboI GATC 5 cut(s) 22, 103, 193, 231, 576
MboII GAAGA 3 cut(s) 275, 370, 410
MflI RGATCY 2 cut(s) 103, 576
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 3 cut(s) 125, 378, 471
MnlI CCTC 2 cut(s) 94, 151
MseI TTAA 4 cut(s) 81, 182, 204, 435
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 340, 533
NdeI CATATG 1 cut(s) 330
NdeII GATC 5 cut(s) 22, 103, 193, 231, 576
NlaIII CATG 4 cut(s) 23, 29, 341, 466
NmuCI GTSAC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 3 cut(s) 308, 440, 466
PkrI GCNGC 3 cut(s) 277, 336, 350
Ppu21I YACGTR 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspPI GGNCC 1 cut(s) 151
PsuI RGATCY 2 cut(s) 103, 576
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 4 cut(s) 81, 182, 204, 435
SatI GCNGC 3 cut(s) 276, 335, 349
Sau3AI GATC 5 cut(s) 22, 103, 193, 231, 576
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 2 cut(s) 335, 360
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 3 cut(s) 125, 378, 471
SsiI CCGC 2 cut(s) 334, 349
SspMI CTAG 3 cut(s) 9, 155, 497
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 457
TaaI ACNGT 4 cut(s) 46, 66, 271, 433
TaiI ACGT 2 cut(s) 35, 550
TaqI TCGA 2 cut(s) 411, 602
TasI AATT 3 cut(s) 125, 378, 471
TauI GCSGC 2 cut(s) 337, 351
TfiI GAWTC 3 cut(s) 308, 440, 466
Tru1I TTAA 4 cut(s) 81, 182, 204, 435
Tru9I TTAA 4 cut(s) 81, 182, 204, 435
TscAI CASTG 2 cut(s) 51, 265
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 17, 495
TspRI CASTG 2 cut(s) 51, 265
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 378, 471
XbaI TCTAGA 1 cut(s) 8
XmiI GTMKAC 2 cut(s) 225, 419
XspI CTAG 3 cut(s) 9, 155, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.