Rw0G009830

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00393
OG0000203
Physical Location & Seq
Forward (+)
14961 .. 23851
8891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009830.1

Sequence Viewer

Length: 4644 bp
ATGGAAAAAATCTGCTTTTCAGTTCTTGGAAAACTCACAGAGTACACAGTAGCACCAGTTCTGCGACAGTTTAGCTATCTGATTCACTGTGAGAGCAACATTGATAATCTCACCAGCCAGGCTGGGAGGCTGGCCGACAAAAGAGATGGAATACAGCTAGCCGTGGATGCGGCGACCAGAAACTTAGAGACTATTGCTCCTGAAGTTGAGTCCTGGCTGCATGATGTTAACAATACCATACAGGACAAGGAGAAGTGTTTTGAGGAAGAAACTGTAACAAAGGCAACATGCTGTAATGGATGGTTTCCAAATTTGAAGTATCGTCATTCCTTGAGTAGGAAAGCTAAGAAGATGACTGTGATTGTTGATAAGCTCCTTGGAGACGGGAGTTTCGCAGTCATTTCTCACCCAGCTCCTCCCCCAGAGATATTTCCATTTCCAAACAAAAAACATTCCGAGTCTGTTGATAAGGCTTTGGCCAAGTCCCATGAAGGGGCAAGCTCCTCAGGAACCTCCAACCCTGCTCCTCCATCACTTATGAAACTATTTGAGAATTTGGAATACAGATTACCTTATATGAAGGTCGTGAATGCTTTGCATAATGATGATATCAACATGATTGGCATTTGCGGGACAATCAAAGGAGGAGATACGATGACAGCAAAAGAATTCATCCAGATAGTAAAACACCAAGATATATTTGAGGAGGTTGTGATGGCAGTTGTGTCCCATGATCCAGACTTGAAGCGGATACAAGTCGAAATTGGAGATATGCTAGGGCTGAATTTGGAAAATATGAGTTTGATTGAAGGAGCAGAGATGCTTCATGCTAGAATGTTTAGCGATACAGAGAGGTTCCTTGTTGTATTGGCTGATGTTTGGAAAATACTTGATTTGGAAGCAGTTGGAATCCCTCATGGTGAAAGTAACCAAGGATGCAAGATCATATTTTTGTCAAGACTGCCAAATGTATTTAGTGAGTTGAGAACTCAGAGTAATTTCAAATTGTTATTGACATCTATATCCGTTGAAGGACCCATGGATTTTGAATCAAGAAGTTCAGTCCTTACAGAAGTAATGAATGCTCTCACCGATGACCAAATAAACCCAATTGTAATATGCGGAATGCCTGGTATAGGCAAGACAACCTTGGTGAAAGAAGTTGGAAAAAAGGCAAAAGAAGGCGGCCTATTCGATGAGGTTGCAATGGCTGTTATGACCCAGGATCCTGACTTGAGTCATATTCAAGATGAAATTGCAGATTTTCTGGGTTTGAAACTTACCGAACAGAGTTTATCTGGAAGAGCATATAAGTTACGTGGAAGATTATCGGGTAGTAAGAGGGTTCTTGTAATATTAGACAATGTTTCAACACCAGTAGATTTGGAAGCATTAGGTATTCCACTTTGTAGTGATAAACAGGGTTGCAAAATTCTGGTATCATCACGAAGCCAAGATAGATTCAATGAGATAAAAACCAAAAAGAATTTTCCTATTGGTGTTTTGAAAGAATCAGAAGCATGGTGTCTGTTTAAGGAGTCGGCAGGCGATTCCATTGAATCTCCAGAGCTACATTCTGTAGCACATCAGGTTCTGAGTGAGTGTGCTGGTTTGCCAATTGCAATTTCTACTGTTGGAAGGGCACTGCAACATAAAAGCAAGCAAATGTGGAAAGATGCGGTTAGACAACTAAGAAAGGCTTGTCCGGAGAACATTCCAGGAGTGATACAAGAAGTGTATGGGAAAATAAAGTTGAGTTACGAATGTTTAAGTAGCAAGGAAGCCAAATCATGTTTTTTACTCTGTTGCCTATATCCAGAAAGTGGTAATATACTGGTTGAAGATTTGGTTAAGTATGGGGTTGGGCTTGGGTTATTTAACAGCATTGATTCAATGGAAGAAGGAAGAAACAGTGTAGAAACATTGATTGACATACTCAAGAGTTGTTTTTTGTTGTTAGACAGCAACAAGAAAGGGTGCGTTAGAATGCATGATGTGGTCCGTGATGTTGCCCTGTTCATATTCTCTGAGGGTAATGAGAGATTTTTGGTAAGATGTGAAGTGGAACTGAAGGATTGGCCTAAGATTAATAGTGTTTCTAAGCAGTACATGTGCAGTACACTGATAAACAATCAAACTCATCAGCATACTGTGCTTTTATTATTGTCAAGCATGGATAAATTGTCTTTGGAACCACCATCCACCATATTTGAAGGAATGGGAGATCTTAAGGTTTTAGGCATGAGGAGCACAGTTGTTTTGCCAATACTGCCATCGCTTCCACTTTTAAGAAACCTTCAAACGTTGTGTCTGGAGCATTGCAATTTTAACAACGATCATGTCAAGATACTCAACAGTGTCCTTGGAAAGCTACGGACACTGATGATACTCAGCTTTCGTGGTTCTTGCATCAAAGAATTACCTGATGAACTTAAAAATTTGTCGAAGCTAAGGTTGCTAGATTTGACAGGATGTATTGGTCTTGAGTTGATTTCACCAGGTGTCATTTCTAGCTTAACCCAACTAGAGGAATTATACATGTGGAATAGCTTTGACAAATGGGTGGTCCTAAGATATGAACATGTCTCAAAAACCCAACTGATGCGAGAGAATCCACATCCAACGCCAGAGGAGTGGGTGAACAACTTTGAGTCAACTCGTTTTGAGAAACATAGGAACGTAAACACTAATGCAGAACTTTCAGAGCTACTTTCCTTGAGCTGTTTGACTAGTTTAGAAACTGCTCTTCCACCAACTAAAACTATGCAAAGCAGTGTGGCATTTCGTAAGCTTGAAAGATTTAAAATCTCTATAGGATTCATGGATGAGGAAAGAAGATTGGATGTAAGCCCTTCTGAGAACTACTTGAGACTTCATGATCTTGATGGAAACTCTCTTGTCGGAAGTACAATCTCTGTGTTACTGAAGAAAACCAACACACTAGATCTGAAAATGAAAAATCTCAAGGATGCTCTCAATTTCTTAGATGGAGACTGTTTTGTAAACTTGAAGTCTCTAACACTGCAAGATTGTGAGGCTATGGAATATCTCATTGACATGACGGATATAGTTCCACTTCCACGTAATGCAGTGCTTCCAGTCTTAGATACGCTGAATATCCGAAGTGCAGATAGGATGAAGGAGATATGTCATGGTCAGCTTCCAATGGGGTCATTTGAAAAGCTAATCCAGATATCTTTAAGCAATCTGTCTCAATTGACACATGTATGGAAGATAGAAGCTCAGTTTGAATGCCTCGAAAATCTAAGACGTGTCGTTGTGAAATCCTGTTCAGCTTTGAAGTTTGTCTTCCTGTTGTCTACTGGTAATGATCTTAAGCAACTTGAAGAACTAGAGATTGCATCTTGCCCGTCCTTGGAAGAGATATTTACCTTGGAAGGATCAGGACATCAGATCAAGTGCCTGAATTTGATACGATTGAGTCTTGTTGATCTAAGGCTTAAGGCAAGCACAAACGCATGCATGATGAACTTCCCTCAACTAATCACCTTGGAGCTCAGATGCCTACCAGAACTCATCAGTCTCTTTCCGAGTCATTTGGCTTCAAAACACAGCTCTAATGCCACTAATCTACGGTATATGGTGGTGAGTAGCTGTAACAATCTACTTGGTGTTTTCTCATCCAGTGTGGTGCAAAACTTACAGAATCTTGAACAACTTGAAGTAAGGTCTTGTGACTCACTGGAAACAGTATTTGAGCTTGAAGGTTTAGAAATAAAAGAAGAGGATGGTGTTACTGCAACACTATTGTCTTGCTTGGAAAAAATGGAGTTGTATAAGCTACCCATGTTGGCATACTTGTGGAAGCCACCTCAAAACATTCTGGCATTTCAAAACTTAACAATGCTCCAAGTTTTCCAGTGCAACAGATTGGAATATGTGTTCCCGCTCTTCATACTGGAAGGTCTAGTGAAACTAGAAGCCATGTTTGTCAGAGATTGCCCTGGGATAGCAGACATCTTTGCAAAAACTGAAGAACATGGCGATGAAGAGAAAACAAATGAAATTGTTATTCCTCAACTAAAAACTCTCCATTTTACCGATTTACTTAGACTCAAAAGATTTTGTCCTGGTTCATGCACTGTTGACTGCCCATCATTGAGAACGCTGGTGCTCACCGACTGCGGTGACCTGGAGACATTTGTTCCACCGGTCGTATCCACAGGAAGTGACCCGATCTACCTTTTTGGTGAACAGGTATGCACAGCTAGAACTGAAAAATCCGTCCTACATGTTTATATATTGTTGCCGAAACTAGAGAAGTTACATGTCAGTGACTGCAGGTCACTAGAAGGGATTTTTGAATTGAGAAAAATATCTACTGATGAAGGGGAAGCTGTAACCATTTCACAGTCAGGGGAAACACCTTCTATTTCCCAACCTGAACGAACAATAAACCAGATGGATTACAGACTAACCAAAGGCTTTCCAAATTTGACATCAATAAAGATTTCTGGTTGTAACAATTTGAGATATCTGCTTTCTCTCTCCATTGCCATAGGTCTGGTGAAGCTCACAAATCTATCCATAGATCACTGCCAGAAGATGGAAGAAATCATAGCAGCAGATGGCAAGGAAACAGAGGACACGGTGAGTATTAGTGTAAGGCTTGGTAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1547

Amino Acids

173.12

Weight (kDa)

5.55

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 194 - 331 8.8e-13 NB-ARC domain
NB-ARC PF00931 356 - 516 5.6e-24 NB-ARC domain
AAA_22 PF13401 370 - 456 5.3e-06 AAA domain
LRR_RPS2 PF23247 981 - 1123 1.4e-17 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1193 - 1321 3.8e-32 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1417 - 1521 2.2e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4293
AccB7I CCANNNNNTGG 2 cut(s) 1823, 4567
AccBSI CCGCTC 1 cut(s) 3910
AccI GTMKAC 1 cut(s) 3320
AccIII TCCGGA 1 cut(s) 1705
AciI CCGC 8 cut(s) 170, 630, 748, 1122, 1185, 1679, 3908, 4146
AclI AACGTT 1 cut(s) 2303
AclWI GGATC 4 cut(s) 728, 1220, 1233, 3409
AcoI YGGCCR 2 cut(s) 132, 477
AcsI RAATTY 9 cut(s) 310, 553, 668, 784, 1431, 1486, 2437, 3427, 4453
AcuI CTGAAG 4 cut(s) 222, 2090, 2945, 4014
AdeI CACNNNGTG 1 cut(s) 2501
AfaI GTAC 4 cut(s) 44, 2108, 2119, 2908
AfiI CCNNNNNNNGG 8 cut(s) 336, 492, 493, 1136, 1823, 2527, 3376, 4567
AflII CTTAAG 3 cut(s) 2228, 3335, 3461
AflIII ACRYGT 7 cut(s) 2109, 2538, 2581, 3223, 3271, 4252, 4288
AgeI ACCGGT 1 cut(s) 4171
AhdI GACNNNNNGTC 1 cut(s) 4303
AhlI ACTAGT 1 cut(s) 2729
AjiI CACGTC 1 cut(s) 3272
AjnI CCWGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
AjuI GAANNNNNNNTTGG 2 cut(s) 1609, 1641
AloI GAACNNNNNNTCC 2 cut(s) 3887, 3919
Alw21I GWGCWC 3 cut(s) 2252, 3519, 4137
Alw26I GTCTC 9 cut(s) 182, 375, 2590, 2863, 2985, 3018, 3216, 3548, 4151
AlwI GGATC 4 cut(s) 728, 1220, 1233, 3409
AlwNI CAGNNNCTG 2 cut(s) 1594, 4299
Aor13HI TCCGGA 1 cut(s) 1705
AoxI GGCC 4 cut(s) 132, 477, 1186, 2078
ApeKI GCWGC 2 cut(s) 217, 4583
ApoI RAATTY 9 cut(s) 310, 553, 668, 784, 1431, 1486, 2437, 3427, 4453
ArsI GACNNNNNNTTYG 6 cut(s) 374, 406, 2293, 2325, 2550, 2582
AseI ATTAAT 1 cut(s) 2088
AsiGI ACCGGT 1 cut(s) 4171
AspS9I GGNCC 3 cut(s) 1034, 1999, 2566
AsuNHI GCTAGC 1 cut(s) 157
AvaII GGWCC 3 cut(s) 1034, 1999, 2566
AxyI CCTNAGG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 1645
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 1225
BanII GRGCYC 1 cut(s) 3519
BbsI GAAGAC 1 cut(s) 3301
Bbv12I GWGCWC 3 cut(s) 2252, 3519, 4137
BbvI GCAGC 2 cut(s) 204, 4595
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
BciVI GTATCC 2 cut(s) 744, 4189
BcoDI GTCTC 9 cut(s) 182, 375, 2590, 2863, 2985, 3018, 3216, 3548, 4151
BcuI ACTAGT 1 cut(s) 2729
BfmI CTRYAG 3 cut(s) 1578, 2811, 4300
BfrI CTTAAG 3 cut(s) 2228, 3335, 3461
BfuAI ACCTGC 1 cut(s) 4293
BfuI GTATCC 2 cut(s) 744, 4189
BglII AGATCT 2 cut(s) 2224, 2944
BisI GCNGC 4 cut(s) 171, 218, 1186, 4584
BlsI GCNGC 4 cut(s) 172, 219, 1187, 4585
Bme1390I CCNGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
Bme18I GGWCC 3 cut(s) 1034, 1999, 2566
BmeRI GACNNNNNGTC 1 cut(s) 4303
BmgBI CACGTC 1 cut(s) 3272
BmgT120I GGNCC 3 cut(s) 1034, 1999, 2566
BmiI GGNNCC 5 cut(s) 511, 857, 1036, 1227, 2193
BmrFI CCNGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
BmsI GCATC 9 cut(s) 157, 810, 926, 1666, 2418, 2592, 2959, 3371, 3512
BmtI GCTAGC 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 1236
BpiI GAAGAC 1 cut(s) 3301
BpmI CTGGAG 3 cut(s) 1548, 2333, 4175
Bpu10I CCTNAGC 1 cut(s) 2450
BpuEI CTTGAG 7 cut(s) 352, 1255, 1922, 2504, 2737, 2887, 2948
BsaAI YACGTR 2 cut(s) 1319, 3083
BsaWI WCCGGW 2 cut(s) 1705, 4171
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 8 cut(s) 336, 492, 493, 1136, 1823, 2527, 3376, 4567
Bse118I RCCGGY 1 cut(s) 4171
Bse1I ACTGG 9 cut(s) 56, 1376, 1839, 3098, 3328, 3645, 3708, 3880, 3924
Bse21I CCTNAGG 1 cut(s) 505
Bse3DI GCAATG 3 cut(s) 1212, 2317, 4512
BseAI TCCGGA 1 cut(s) 1705
BseBI CCWGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
BseLI CCNNNNNNNGG 8 cut(s) 336, 492, 493, 1136, 1823, 2527, 3376, 4567
BseMI GCAATG 3 cut(s) 1212, 2317, 4512
BseMII CTCAG 8 cut(s) 519, 1004, 1586, 2019, 2404, 2847, 3257, 3532
BseNI ACTGG 9 cut(s) 56, 1376, 1839, 3098, 3328, 3645, 3708, 3880, 3924
BseRI GAGGAG 7 cut(s) 405, 493, 516, 660, 719, 2260, 2645
BseSI GKGCMC 1 cut(s) 1645
BseXI GCAGC 2 cut(s) 204, 4595
BseYI CCCAGC 2 cut(s) 122, 409
BsgI GTGCAG 2 cut(s) 2134, 3147
Bsh1285I CGRYCG 1 cut(s) 4176
BshFI GGCC 4 cut(s) 134, 479, 1188, 2080
BshTI ACCGGT 1 cut(s) 4171
BsiEI CGRYCG 1 cut(s) 4176
BsiHKAI GWGCWC 3 cut(s) 2252, 3519, 4137
BsiSI CCGG 2 cut(s) 1706, 4172
BslFI GGGAC 3 cut(s) 469, 646, 712
BslI CCNNNNNNNGG 8 cut(s) 336, 492, 493, 1136, 1823, 2527, 3376, 4567
BsmAI GTCTC 9 cut(s) 182, 375, 2590, 2863, 2985, 3018, 3216, 3548, 4151
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 3 cut(s) 469, 646, 712
BsmI GAATGC 5 cut(s) 595, 1087, 1131, 1992, 3257
BsnI GGCC 4 cut(s) 134, 479, 1188, 2080
Bsp1286I GDGCHC 4 cut(s) 1645, 2252, 3519, 4137
Bsp13I TCCGGA 1 cut(s) 1705
Bsp19I CCATGG 1 cut(s) 1038
BspACI CCGC 8 cut(s) 170, 630, 748, 1122, 1185, 1679, 3908, 4146
BspANI GGCC 4 cut(s) 134, 479, 1188, 2080
BspCNI CTCAG 8 cut(s) 518, 1003, 1587, 2020, 2403, 2848, 3256, 3531
BspEI TCCGGA 1 cut(s) 1705
BspHI TCATGA 1 cut(s) 2875
BspLI GGNNCC 5 cut(s) 511, 857, 1036, 1227, 2193
BspMAI CTGCAG 1 cut(s) 4304
BspMI ACCTGC 1 cut(s) 4293
BspOI GCTAGC 1 cut(s) 161
BspPI GGATC 4 cut(s) 728, 1220, 1233, 3409
BspQI GCTCTTC 3 cut(s) 1297, 2751, 3917
BspTI CTTAAG 3 cut(s) 2228, 3335, 3461
BsrBI CCGCTC 1 cut(s) 3910
BsrDI GCAATG 3 cut(s) 1212, 2317, 4512
BsrFI RCCGGY 1 cut(s) 4171
BsrI ACTGG 9 cut(s) 56, 1376, 1839, 3098, 3328, 3645, 3708, 3880, 3924
BssAI RCCGGY 1 cut(s) 4171
BssT1I CCWWGG 8 cut(s) 376, 931, 1038, 1149, 2362, 3375, 3393, 3510
Bst2UI CCWGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
Bst6I CTCTTC 6 cut(s) 1297, 2751, 3375, 3738, 3917, 4005
BstAFI CTTAAG 3 cut(s) 2228, 3335, 3461
BstAPI GCANNNNNTGC 1 cut(s) 2152
BstBAI YACGTR 2 cut(s) 1319, 3083
BstC8I GCNNGC 7 cut(s) 132, 159, 499, 1546, 1661, 3469, 3481
BstDSI CCRYGG 2 cut(s) 162, 1038
BstEII GGTNACC 1 cut(s) 4148
BstENI CCTNNNNNAGG 2 cut(s) 334, 1134
BstMAI GTCTC 9 cut(s) 182, 375, 2590, 2863, 2985, 3018, 3216, 3548, 4151
BstMCI CGRYCG 1 cut(s) 4176
BstMWI GCNNNNNNNGC 5 cut(s) 167, 2152, 2247, 2269, 2455
BstNI CCWGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
BstNSI RCATGY 8 cut(s) 291, 2113, 2542, 2585, 3227, 3483, 4256, 4292
BstPAI GACNNNNGTC 1 cut(s) 1236
BstPI GGTNACC 1 cut(s) 4148
BstSCI CCNGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
BstSFI CTRYAG 3 cut(s) 1578, 2811, 4300
BstSLI GKGCMC 1 cut(s) 1645
BstV1I GCAGC 2 cut(s) 204, 4595
BstV2I GAAGAC 1 cut(s) 3301
BstX2I RGATCY 3 cut(s) 1225, 2224, 2944
BstXI CCANNNNNNTGG 2 cut(s) 2634, 4525
BstYI RGATCY 3 cut(s) 1225, 2224, 2944
Bsu36I CCTNAGG 1 cut(s) 505
BsuI GTATCC 2 cut(s) 744, 4189
BsuRI GGCC 4 cut(s) 134, 479, 1188, 2080
BtgI CCRYGG 2 cut(s) 162, 1038
BtgZI GCGATG 2 cut(s) 2259, 4020
BtrI CACGTC 1 cut(s) 3272
BtsI GCAGTG 5 cut(s) 1643, 2779, 3020, 3096, 4555
BveI ACCTGC 1 cut(s) 4293
Cac8I GCNNGC 7 cut(s) 132, 159, 499, 1546, 1661, 3469, 3481
CaiI CAGNNNCTG 2 cut(s) 1594, 4299
CciI TCATGA 1 cut(s) 2875
Cfr10I RCCGGY 1 cut(s) 4171
Cfr13I GGNCC 3 cut(s) 1034, 1999, 2566
CsiI ACCWGGT 1 cut(s) 2497
Csp6I GTAC 4 cut(s) 43, 2107, 2118, 2907
CspAI ACCGGT 1 cut(s) 4171
CspCI CAANNNNNGTGG 2 cut(s) 2191, 2226
CviQI GTAC 4 cut(s) 43, 2107, 2118, 2907
DraI TTTAAA 1 cut(s) 2803
DraIII CACNNNGTG 1 cut(s) 2501
DriI GACNNNNNGTC 1 cut(s) 4303
EaeI YGGCCR 2 cut(s) 132, 477
Eam1104I CTCTTC 6 cut(s) 1297, 2751, 3375, 3738, 3917, 4005
Eam1105I GACNNNNNGTC 1 cut(s) 4303
EarI CTCTTC 6 cut(s) 1297, 2751, 3375, 3738, 3917, 4005
Ecl136II GAGCTC 1 cut(s) 3517
Eco130I CCWWGG 8 cut(s) 376, 931, 1038, 1149, 2362, 3375, 3393, 3510
Eco24I GRGCYC 1 cut(s) 3519
Eco32I GATATC 3 cut(s) 610, 3195, 4496
Eco47I GGWCC 3 cut(s) 1034, 1999, 2566
Eco53kI GAGCTC 1 cut(s) 3517
Eco57I CTGAAG 4 cut(s) 222, 2090, 2945, 4014
Eco81I CCTNAGG 1 cut(s) 505
Eco91I GGTNACC 1 cut(s) 4148
EcoICRI GAGCTC 1 cut(s) 3517
EcoNI CCTNNNNNAGG 2 cut(s) 334, 1134
EcoO109I RGGNCCY 1 cut(s) 1034
EcoO65I GGTNACC 1 cut(s) 4148
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
EcoRV GATATC 3 cut(s) 610, 3195, 4496
EcoT14I CCWWGG 8 cut(s) 376, 931, 1038, 1149, 2362, 3375, 3393, 3510
EcoT22I ATGCAT 2 cut(s) 1992, 3485
EcoT38I GRGCYC 1 cut(s) 3519
ErhI CCWWGG 8 cut(s) 376, 931, 1038, 1149, 2362, 3375, 3393, 3510
Esp3I CGTCTC 1 cut(s) 375
FalI AAGNNNNNCTT 6 cut(s) 1133, 1165, 1684, 1716, 3293, 3325
FaqI GGGAC 3 cut(s) 469, 646, 712
FauI CCCGC 2 cut(s) 623, 3915
FblI GTMKAC 1 cut(s) 3320
Fnu4HI GCNGC 4 cut(s) 171, 218, 1186, 4584
FriOI GRGCYC 1 cut(s) 3519
Fsp4HI GCNGC 4 cut(s) 171, 218, 1186, 4584
GluI GCNGC 4 cut(s) 171, 218, 1186, 4584
GsaI CCCAGC 2 cut(s) 126, 413
GsuI CTGGAG 3 cut(s) 1548, 2333, 4175
HaeIII GGCC 4 cut(s) 134, 479, 1188, 2080
HapII CCGG 2 cut(s) 1706, 4172
HincII GTYRAC 3 cut(s) 229, 2655, 4108
HindII GTYRAC 3 cut(s) 229, 2655, 4108
HindIII AAGCTT 1 cut(s) 2789
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 2 cut(s) 1706, 4172
HpyCH4IV ACGT 5 cut(s) 1318, 2303, 2679, 3082, 3271
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 2152, 2247, 2269, 2455
HpySE526I ACGT 5 cut(s) 1318, 2303, 2679, 3082, 3271
Kpn2I TCCGGA 1 cut(s) 1705
KspAI GTTAAC 1 cut(s) 229
LguI GCTCTTC 3 cut(s) 1297, 2751, 3917
Lsp1109I GCAGC 2 cut(s) 204, 4595
LweI GCATC 9 cut(s) 157, 810, 926, 1666, 2418, 2592, 2959, 3371, 3512
MabI ACCWGGT 1 cut(s) 2497
MaeII ACGT 5 cut(s) 1318, 2303, 2679, 3082, 3271
MbiI CCGCTC 1 cut(s) 3910
MfeI CAATTG 3 cut(s) 1110, 1617, 3215
MflI RGATCY 3 cut(s) 1225, 2224, 2944
MhlI GDGCHC 4 cut(s) 1645, 2252, 3519, 4137
MlsI TGGCCA 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 9 cut(s) 218, 467, 1246, 1547, 2660, 3451, 3562, 3692, 4068
MmeI TCCRAC 6 cut(s) 540, 886, 1144, 1615, 2645, 2881
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 2 cut(s) 1992, 3485
MroI TCCGGA 1 cut(s) 1705
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 6 cut(s) 603, 3056, 3226, 3820, 4005, 4293
Msp20I TGGCCA 1 cut(s) 479
MspCI CTTAAG 3 cut(s) 2228, 3335, 3461
MspI CCGG 2 cut(s) 1706, 4172
MspR9I CCNGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
MunI CAATTG 3 cut(s) 1110, 1617, 3215
Mva1269I GAATGC 5 cut(s) 595, 1087, 1131, 1992, 3257
MvaI CCWGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
MwoI GCNNNNNNNGC 5 cut(s) 167, 2152, 2247, 2269, 2455
NcoI CCATGG 1 cut(s) 1038
NheI GCTAGC 1 cut(s) 157
NlaIV GGNNCC 5 cut(s) 511, 857, 1036, 1227, 2193
NmuCI GTSAC 5 cut(s) 3695, 4148, 4190, 4295, 4305
NsiI ATGCAT 2 cut(s) 1992, 3485
NspI RCATGY 8 cut(s) 291, 2113, 2542, 2585, 3227, 3483, 4256, 4292
PaeI GCATGC 1 cut(s) 3483
PagI TCATGA 1 cut(s) 2875
PasI CCCWGGG 1 cut(s) 3965
PciI ACATGT 6 cut(s) 2109, 2538, 2581, 3223, 4252, 4288
PciSI GCTCTTC 3 cut(s) 1297, 2751, 3917
PctI GAATGC 5 cut(s) 595, 1087, 1131, 1992, 3257
PflMI CCANNNNNTGG 2 cut(s) 1823, 4567
PfoI TCCNGGA 1 cut(s) 1717
PinAI ACCGGT 1 cut(s) 4171
PkrI GCNGC 4 cut(s) 172, 219, 1187, 4585
PleI GAGTC 9 cut(s) 217, 466, 1245, 1546, 2659, 3450, 3561, 3692, 4068
PpsI GAGTC 9 cut(s) 217, 466, 1245, 1546, 2659, 3450, 3561, 3692, 4068
Ppu21I YACGTR 2 cut(s) 1319, 3083
PpuMI RGGWCCY 1 cut(s) 1034
PscI ACATGT 6 cut(s) 2109, 2538, 2581, 3223, 4252, 4288
PshAI GACNNNNGTC 1 cut(s) 1236
PshBI ATTAAT 1 cut(s) 2088
Psp124BI GAGCTC 1 cut(s) 3519
Psp1406I AACGTT 1 cut(s) 2303
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
PspEI GGTNACC 1 cut(s) 4148
PspFI CCCAGC 2 cut(s) 122, 409
PspGI CCWGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
PspN4I GGNNCC 5 cut(s) 511, 857, 1036, 1227, 2193
PspPI GGNCC 3 cut(s) 1034, 1999, 2566
PspPPI RGGWCCY 1 cut(s) 1034
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
PstI CTGCAG 1 cut(s) 4304
PstNI CAGNNNCTG 2 cut(s) 1594, 4299
PsuI RGATCY 3 cut(s) 1225, 2224, 2944
RsaI GTAC 4 cut(s) 44, 2108, 2119, 2908
RsaNI GTAC 4 cut(s) 43, 2107, 2118, 2907
RseI CAYNNNNRTG 6 cut(s) 603, 3056, 3226, 3820, 4005, 4293
SacI GAGCTC 1 cut(s) 3519
SapI GCTCTTC 3 cut(s) 1297, 2751, 3917
SatI GCNGC 4 cut(s) 171, 218, 1186, 4584
Sau96I GGNCC 3 cut(s) 1034, 1999, 2566
SchI GAGTC 9 cut(s) 218, 467, 1246, 1547, 2660, 3451, 3562, 3692, 4068
ScrFI CCNGG 9 cut(s) 119, 214, 1131, 1223, 1719, 2499, 3966, 4092, 4154
SduI GDGCHC 4 cut(s) 1645, 2252, 3519, 4137
SexAI ACCWGGT 1 cut(s) 2497
SfaNI GCATC 9 cut(s) 157, 810, 926, 1666, 2418, 2592, 2959, 3371, 3512
SfcI CTRYAG 3 cut(s) 1578, 2811, 4300
SinI GGWCC 3 cut(s) 1034, 1999, 2566
SmiMI CAYNNNNRTG 6 cut(s) 603, 3056, 3226, 3820, 4005, 4293
SpeI ACTAGT 1 cut(s) 2729
SphI GCATGC 1 cut(s) 3483
SsiI CCGC 8 cut(s) 170, 630, 748, 1122, 1185, 1679, 3908, 4146
SspI AATATT 1 cut(s) 1356
SstI GAGCTC 1 cut(s) 3519
StyD4I CCNGG 9 cut(s) 117, 212, 1129, 1221, 1717, 2497, 3964, 4090, 4152
StyI CCWWGG 8 cut(s) 376, 931, 1038, 1149, 2362, 3375, 3393, 3510
TaiI ACGT 5 cut(s) 1321, 2306, 2682, 3085, 3274
TaqI TCGA 4 cut(s) 759, 1194, 2444, 3258
TatI WGTACW 4 cut(s) 42, 2106, 2117, 2906
TauI GCSGC 2 cut(s) 173, 1188
TseFI GTSAC 5 cut(s) 3695, 4148, 4190, 4295, 4305
TseI GCWGC 2 cut(s) 217, 4583
Tsp45I GTSAC 5 cut(s) 3695, 4148, 4190, 4295, 4305
TspGWI ACGGA 5 cut(s) 1015, 1991, 2389, 3077, 4234
Van91I CCANNNNNTGG 2 cut(s) 1823, 4567
Vha464I CTTAAG 3 cut(s) 2228, 3335, 3461
VpaK11BI GGWCC 3 cut(s) 1034, 1999, 2566
VspI ATTAAT 1 cut(s) 2088
XagI CCTNNNNNAGG 2 cut(s) 334, 1134
XapI RAATTY 9 cut(s) 310, 553, 668, 784, 1431, 1486, 2437, 3427, 4453
XceI RCATGY 8 cut(s) 291, 2113, 2542, 2585, 3227, 3483, 4256, 4292
XmiI GTMKAC 1 cut(s) 3320
Zsp2I ATGCAT 2 cut(s) 1992, 3485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.