Rroxscaffold_1G00019090

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000203
Physical Location & Seq
Forward (+)
23264775 .. 23267477
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019090.1

Sequence Viewer

Length: 2121 bp
ATGAGGACATTGCCTCCATCCTCAATACAACTATCACTTGCAGTTTTGAAAGACCTTCAAACACTGCGTGTAGAGTGTCACATTCTGCCGGGTGGTGTATCTGTCATTGGGGAGCTAAGGACACTTACGATGCTCAGTTTGCGTAAAACCAACATCAAGCAATTGCCTGATACATTTAAAAATTTATCTAATCTGAGATTGCTTGATTTGTTCAGATGTAAGAAGCTTAAAATAATCTCACCAGGGGTCATATCAAGTTTATCTCGACTTGAAGAGTTGTATATGTGGTCTAGCTTCGAGGATTGGGTGGTTGAGAAACTAGCCTTGACTGAAACAACCAATTGGATCTCTCAAGTGGAGGCTCAGGATGCTGCATCCAAAGAAGTAGACCACTGGGAAACGACACTGGACACGTGGAAGAGATTCAACAAATTAGCGGCTGAGCAACCAGCAAACGTTGGGAAGCAATTTAGAGAAGAGGTTCAAGGTCTCTTTAGAGCAAACAATGAGCTAACAAGGTGGGCCAACTCCATGGACTGGAAAACTGGTATACTTGCGGAGCTACTTTCCTTGTCCCATTTGACTACTTTAGAAGTTTTTCTACCACCGGTTAGTGAGATACTAACCAGCAATTTATTTAACAAGCTCGAAAAATTTAAGATCTCTATAGGATGGAAGCACCCTATGTATAATTGGGAACTAAAGCATGCTGACAACTACTTGGGAGTTCACGATCTTGAAGCAAGGGCTGCTGTGGGTAGTGGAATCACTTTGTTGCTAAAGAAAACCAGCATTCTTGAGTTTAGAATGAAGAATTGGACCAAACCTCAAGCTCTGAATGTCTTAGATACAGATCAGTACCATTTCGCAAAGATGAAGTCTCTTACACTCAAGGAGTGTGATGCTGTGGAGTATCTGATTGACAGGACACTTTCGAAACATAATACTCCACATAGCAGCAGCGGCCTCTTTCCTGTGTTGAATTCACTGGCTGAAATGATTTTTAATGGTGAGCTGCCGACGGGGTCTCTCAAGGAACTAAAACATTTGGAATTAAATTGTCTACCTGCATTGACATATATTTGGAAGACCAAGAGTCGGTCTGAACTGGGTCTCTGGAGAAACATTCTAGGACCTGTTCAAGTGCTGAGAATACAGTACTGCTCCTCCTTGGAAAAGATTTTTGCCTATGAAGATGATGAGGAAGTGCTCAACTTCCAAAGTCTGACAGAGTTGACTCTGTCAGATCTACCAAGCTTCACTGGGATAAGCAAAAATATCTCTAAGGGGTCGGAAAGGCTACCAGAAGACATCAGCCCGGAACTATCTGACGTCATCATACAACCTCTGTTCGACACCAAGGTTCATTTCCCAGCCTTGACAAAACTATACGTTAGATCCATGAACCTAACAGAGATATGGAACAGCCAACTTTCTGCAGAATCCTTCTGTGAACTACGGGTGAGCGAATGTCAACTAAAATCTCTATGGGTGAGCGAATGTCACAAACTGTTGCGTTTGGTACCAGCATATATGCAAAATAGATTGCAGAAATTGGAATACATATGGGCATGGCACTGTTCTTCACTAGAAGAGATTTTTGAATTTAGAAGATTGACCGTCGATGATGCTGCTTTAACAATTTCTGAGTCAGGGAGTCAAGGGACGCAAATGAACAAGATGATGTCTTACAAACAATCTGGTCAAGCCTTTCAGAATCTTAGACAGATATCAACTTTGTTTTGTGAAAGTTTGAGAACTCTGCTCTCTCCCTCAATTGCCAGAGGTCTCGTGAAGCTTCAAATACTAATGATACGTAACTGCAAGAAGATTGAAGTAGTAGTTGCAACAGCAGCAGAGGGTGAAGAAACAAATGATGACACCTTGTTCCCTCAGCTATTTACTTTGACACTTGACGATCTACCAAATCTCAGAAGCTTTTCGCAAGGTAAAGATAATTTCAAATGGCCACTATTGAAAAACATAAAAATCCTCAAATGCTACAATATGAAGAAGTTTTGTTTTGGATCCCTAAGCACACCAAAGGAAGTGAACATAGATCTCAAAGGTGCCCGTGTGAGTGTTTTGCAGGAGCTCAATAACAGTAGAAACATAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

706

Amino Acids

80.73

Weight (kDa)

7.85

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 15 - 105 2.3e-08 Leucine-rich repeat region
LRR_8 PF13855 40 - 95 5e-07 Leucine rich repeat
LRR_RPS2 PF23247 461 - 609 5.4e-19 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 568 - 672 5.9e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1335
Acc36I ACCTGC 1 cut(s) 1075
Acc65I GGTACC 1 cut(s) 1522
AccB1I GGYRCC 2 cut(s) 1522, 2069
AccB7I CCANNNNNTGG 1 cut(s) 537
AccI GTMKAC 3 cut(s) 387, 550, 1063
AciI CCGC 3 cut(s) 437, 557, 963
AclI AACGTT 1 cut(s) 456
AclWI GGATC 4 cut(s) 353, 1392, 2022, 2035
AcoI YGGCCR 1 cut(s) 1967
AcsI RAATTY 4 cut(s) 181, 653, 982, 1604
AcvI CACGTG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 1332
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 3 cut(s) 860, 1160, 1524
AfiI CCNNNNNNNGG 2 cut(s) 537, 1098
AflIII ACRYGT 1 cut(s) 411
AgeI ACCGGT 1 cut(s) 607
AhdI GACNNNNNGTC 1 cut(s) 1095
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 4 cut(s) 799, 831, 1352, 1384
Alw21I GWGCWC 2 cut(s) 1212, 2097
Alw26I GTCTC 5 cut(s) 494, 885, 1032, 1118, 1793
AlwI GGATC 4 cut(s) 353, 1392, 2022, 2035
AoxI GGCC 3 cut(s) 522, 964, 1967
ApeKI GCWGC 7 cut(s) 371, 749, 957, 960, 1015, 1631, 1853
ApoI RAATTY 4 cut(s) 181, 653, 982, 1604
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AsiGI ACCGGT 1 cut(s) 607
Asp700I GAANNNNTTC 4 cut(s) 422, 480, 597, 1939
Asp718I GGTACC 1 cut(s) 1522
AspS9I GGNCC 3 cut(s) 522, 819, 1133
AsuC2I CCSGG 2 cut(s) 90, 1319
AsuHPI GGTGA 5 cut(s) 231, 1022, 1474, 1504, 1874
AsuII TTCGAA 1 cut(s) 935
AvaII GGWCC 2 cut(s) 819, 1133
BaeGI GKGCMC 1 cut(s) 2074
BalI TGGCCA 1 cut(s) 1969
BamHI GGATCC 1 cut(s) 2027
BanI GGYRCC 2 cut(s) 1522, 2069
BanII GRGCYC 1 cut(s) 2097
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BauI CACGAG 1 cut(s) 1790
BbrPI CACGTG 1 cut(s) 414
BbsI GAAGAC 2 cut(s) 1094, 1314
Bbv12I GWGCWC 2 cut(s) 1212, 2097
BbvCI CCTCAGC 1 cut(s) 1893
BbvI GCAGC 7 cut(s) 358, 736, 969, 972, 1002, 1618, 1865
BccI CCATC 2 cut(s) 25, 666
BcgI CGANNNNNNTGC 2 cut(s) 1613, 1647
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 2 cut(s) 90, 1319
BcoDI GTCTC 5 cut(s) 494, 885, 1032, 1118, 1793
BfaI CTAG 4 cut(s) 291, 320, 1130, 1589
BfmI CTRYAG 2 cut(s) 666, 1437
BfuAI ACCTGC 1 cut(s) 1075
BglII AGATCT 3 cut(s) 660, 1246, 2059
BisI GCNGC 9 cut(s) 372, 438, 750, 958, 961, 964, 1016, 1632, 1854
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 9 cut(s) 373, 439, 751, 959, 962, 965, 1017, 1633, 1855
BmcAI AGTACT 1 cut(s) 1160
Bme1390I CCNGG 3 cut(s) 90, 243, 1319
Bme18I GGWCC 2 cut(s) 819, 1133
BmeRI GACNNNNNGTC 1 cut(s) 1095
BmgT120I GGNCC 3 cut(s) 522, 819, 1133
BmiI GGNNCC 3 cut(s) 1524, 2029, 2071
BmrFI CCNGG 3 cut(s) 90, 243, 1319
BmrI ACTGGG 3 cut(s) 403, 1118, 1272
BmsI GCATC 5 cut(s) 120, 358, 383, 892, 1618
BmuI ACTGGG 3 cut(s) 403, 1118, 1272
BpiI GAAGAC 2 cut(s) 1094, 1314
BpmI CTGGAG 1 cut(s) 1138
Bpu10I CCTNAGC 4 cut(s) 116, 363, 1893, 2033
Bpu1102I GCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 5 cut(s) 336, 813, 818, 875, 1016
BpuMI CCSGG 2 cut(s) 90, 1319
BsaAI YACGTR 2 cut(s) 414, 1817
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 1332
BsaI GGTCTC 4 cut(s) 494, 1032, 1118, 1793
BsaJI CCNNGG 4 cut(s) 242, 531, 1170, 1359
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 3 cut(s) 28, 1151, 1181
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 1098
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 7 cut(s) 398, 411, 542, 550, 993, 1113, 1267
Bse3DI GCAATG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 4 cut(s) 242, 531, 1170, 1359
BseGI GGATG 4 cut(s) 17, 373, 374, 677
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 2 cut(s) 537, 1098
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 8 cut(s) 148, 185, 377, 432, 1139, 1638, 1907, 1945
BseNI ACTGG 7 cut(s) 398, 411, 542, 550, 993, 1113, 1267
BseRI GAGGAG 1 cut(s) 1156
BseSI GKGCMC 1 cut(s) 2074
BseXI GCAGC 7 cut(s) 358, 736, 969, 972, 1002, 1618, 1865
BseYI CCCAGC 1 cut(s) 1372
BshFI GGCC 3 cut(s) 524, 966, 1969
BshNI GGYRCC 2 cut(s) 1522, 2069
BshTI ACCGGT 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 1212, 2097
BsiSI CCGG 3 cut(s) 89, 608, 1319
BslFI GGGAC 2 cut(s) 559, 1678
BslI CCNNNNNNNGG 2 cut(s) 537, 1098
BsmAI GTCTC 5 cut(s) 494, 885, 1032, 1118, 1793
BsmFI GGGAC 2 cut(s) 559, 1678
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 3 cut(s) 524, 966, 1969
Bso31I GGTCTC 4 cut(s) 494, 1032, 1118, 1793
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 3 cut(s) 1212, 2074, 2097
Bsp143I GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 3 cut(s) 437, 557, 963
BspANI GGCC 3 cut(s) 524, 966, 1969
BspCNI CTCAG 8 cut(s) 147, 186, 376, 433, 1140, 1639, 1906, 1944
BspLI GGNNCC 3 cut(s) 1524, 2029, 2071
BspMAI CTGCAG 1 cut(s) 1441
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 4 cut(s) 353, 1392, 2022, 2035
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 2 cut(s) 1522, 2069
BspTNI GGTCTC 4 cut(s) 494, 1032, 1118, 1793
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 7 cut(s) 398, 411, 542, 550, 993, 1113, 1267
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 4 cut(s) 242, 531, 1170, 1359
BssMI GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
BssNAI GTATAC 1 cut(s) 551
BssNI GRCGYC 1 cut(s) 1332
BssSI CACGAG 1 cut(s) 1790
BssT1I CCWWGG 3 cut(s) 531, 1170, 1359
Bst1107I GTATAC 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 1790
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 5 cut(s) 1158, 1512, 1580, 1621, 2105
Bst6I CTCTTC 4 cut(s) 267, 413, 471, 1587
BstACI GRCGYC 1 cut(s) 1332
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBAI YACGTR 2 cut(s) 414, 1817
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 1 cut(s) 708
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 17, 373, 374, 677
BstKTI GATC 9 cut(s) 348, 663, 736, 856, 1249, 1400, 1921, 2030, 2062
BstMAI GTCTC 5 cut(s) 494, 885, 1032, 1118, 1793
BstMBI GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
BstMWI GCNNNNNNNGC 5 cut(s) 139, 368, 749, 963, 1853
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 3 cut(s) 88, 241, 1317
BstSFI CTRYAG 2 cut(s) 666, 1437
BstSLI GKGCMC 1 cut(s) 2074
BstSNI TACGTA 1 cut(s) 1817
BstV1I GCAGC 7 cut(s) 358, 736, 969, 972, 1002, 1618, 1865
BstV2I GAAGAC 2 cut(s) 1094, 1314
BstX2I RGATCY 6 cut(s) 345, 660, 1246, 1397, 2027, 2059
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 6 cut(s) 345, 660, 1246, 1397, 2027, 2059
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 3 cut(s) 524, 966, 1969
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 4 cut(s) 17, 373, 374, 677
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 6 cut(s) 62, 391, 404, 986, 1260, 1576
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 522, 819, 1133
CseI GACGC 1 cut(s) 1675
Csp6I GTAC 3 cut(s) 859, 1159, 1523
CspAI ACCGGT 1 cut(s) 607
CviAII CATG 4 cut(s) 532, 707, 1402, 1572
CviQI GTAC 3 cut(s) 859, 1159, 1523
DpnI GATC 9 cut(s) 347, 662, 735, 855, 1248, 1399, 1920, 2029, 2061
DpnII GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
DraI TTTAAA 1 cut(s) 178
DraIII CACNNNGTG 1 cut(s) 68
DriI GACNNNNNGTC 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 1967
Eam1104I CTCTTC 4 cut(s) 267, 413, 471, 1587
Eam1105I GACNNNNNGTC 1 cut(s) 1095
EarI CTCTTC 4 cut(s) 267, 413, 471, 1587
Ecl136II GAGCTC 1 cut(s) 2095
Eco105I TACGTA 1 cut(s) 1817
Eco130I CCWWGG 3 cut(s) 531, 1170, 1359
Eco24I GRGCYC 1 cut(s) 2097
Eco31I GGTCTC 4 cut(s) 494, 1032, 1118, 1793
Eco32I GATATC 1 cut(s) 1731
Eco47I GGWCC 2 cut(s) 819, 1133
Eco53kI GAGCTC 1 cut(s) 2095
Eco72I CACGTG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 2095
EcoO109I RGGNCCY 1 cut(s) 1133
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 1731
EcoT14I CCWWGG 3 cut(s) 531, 1170, 1359
EcoT38I GRGCYC 1 cut(s) 2097
ErhI CCWWGG 3 cut(s) 531, 1170, 1359
FaeI CATG 4 cut(s) 535, 710, 1405, 1575
FaqI GGGAC 2 cut(s) 559, 1678
FatI CATG 4 cut(s) 531, 706, 1401, 1571
FauNDI CATATG 1 cut(s) 1565
FblI GTMKAC 3 cut(s) 387, 550, 1063
Fnu4HI GCNGC 9 cut(s) 372, 438, 750, 958, 961, 964, 1016, 1632, 1854
FokI GGATG 4 cut(s) 4, 361, 380, 684
FriOI GRGCYC 1 cut(s) 2097
Fsp4HI GCNGC 9 cut(s) 372, 438, 750, 958, 961, 964, 1016, 1632, 1854
FspBI CTAG 4 cut(s) 291, 320, 1130, 1589
GluI GCNGC 9 cut(s) 372, 438, 750, 958, 961, 964, 1016, 1632, 1854
GsaI CCCAGC 1 cut(s) 1376
GsuI CTGGAG 1 cut(s) 1138
HaeIII GGCC 3 cut(s) 524, 966, 1969
HapII CCGG 3 cut(s) 89, 608, 1319
HgaI GACGC 1 cut(s) 1675
Hin1I GRCGYC 1 cut(s) 1332
Hin1II CATG 4 cut(s) 535, 710, 1405, 1575
HincII GTYRAC 2 cut(s) 1236, 1475
HindII GTYRAC 2 cut(s) 1236, 1475
HindIII AAGCTT 4 cut(s) 224, 1255, 1796, 1936
HinfI GANTC 8 cut(s) 423, 765, 1096, 1237, 1442, 1649, 1657, 1717
HpaII CCGG 3 cut(s) 89, 608, 1319
HphI GGTGA 5 cut(s) 231, 1022, 1474, 1504, 1874
Hpy166II GTNNAC 8 cut(s) 388, 551, 730, 1064, 1236, 1454, 1475, 2053
Hpy188III TCNNGA 7 cut(s) 264, 365, 731, 737, 797, 1117, 1792
Hpy8I GTNNAC 8 cut(s) 388, 551, 730, 1064, 1236, 1454, 1475, 2053
Hpy99I CGWCG 2 cut(s) 1024, 1625
HpyAV CCTTC 2 cut(s) 65, 1456
HpyCH4III ACNGT 5 cut(s) 1158, 1512, 1580, 1621, 2105
HpyCH4IV ACGT 5 cut(s) 413, 456, 1332, 1392, 1816
HpyCH4V TGCA 9 cut(s) 41, 374, 1070, 1439, 1537, 1549, 1824, 1847, 2089
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 368, 749, 963, 1853
HpySE526I ACGT 5 cut(s) 413, 456, 1332, 1392, 1816
Hsp92I GRCGYC 1 cut(s) 1332
Hsp92II CATG 4 cut(s) 535, 710, 1405, 1575
KpnI GGTACC 1 cut(s) 1526
Kzo9I GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
LmnI GCTCC 4 cut(s) 112, 559, 1169, 2092
Lsp1109I GCAGC 7 cut(s) 358, 736, 969, 972, 1002, 1618, 1865
LweI GCATC 5 cut(s) 120, 358, 383, 892, 1618
MaeI CTAG 4 cut(s) 291, 320, 1130, 1589
MaeII ACGT 5 cut(s) 413, 456, 1332, 1392, 1816
MaeIII GTNAC 3 cut(s) 77, 1502, 1817
MalI GATC 9 cut(s) 347, 662, 735, 855, 1248, 1399, 1920, 2029, 2061
MboI GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
MfeI CAATTG 3 cut(s) 161, 340, 1776
MflI RGATCY 6 cut(s) 345, 660, 1246, 1397, 2027, 2059
MhlI GDGCHC 3 cut(s) 1212, 2074, 2097
MlsI TGGCCA 1 cut(s) 1969
MluNI TGGCCA 1 cut(s) 1969
MlyI GAGTC 4 cut(s) 1105, 1231, 1658, 1666
MmeI TCCRAC 1 cut(s) 1272
Mox20I TGGCCA 1 cut(s) 1969
MroXI GAANNNNTTC 4 cut(s) 422, 480, 597, 1939
MscI TGGCCA 1 cut(s) 1969
MseI TTAA 7 cut(s) 177, 228, 639, 657, 1005, 1055, 1637
Msp20I TGGCCA 1 cut(s) 1969
MspA1I CMGCKG 1 cut(s) 963
MspI CCGG 3 cut(s) 89, 608, 1319
MspR9I CCNGG 3 cut(s) 90, 243, 1319
MunI CAATTG 3 cut(s) 161, 340, 1776
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 5 cut(s) 139, 368, 749, 963, 1853
NciI CCSGG 2 cut(s) 90, 1319
NcoI CCATGG 1 cut(s) 531
NdeI CATATG 1 cut(s) 1565
NdeII GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
NlaIII CATG 4 cut(s) 535, 710, 1405, 1575
NlaIV GGNNCC 3 cut(s) 1524, 2029, 2071
NmuCI GTSAC 2 cut(s) 77, 1502
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 935
PaeI GCATGC 1 cut(s) 710
PctI GAATGC 1 cut(s) 792
PdmI GAANNNNTTC 4 cut(s) 422, 480, 597, 1939
PfeI GAWTC 4 cut(s) 423, 765, 1442, 1717
PflFI GACNNNGTC 2 cut(s) 1024, 1240
PflMI CCANNNNNTGG 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 607
PkrI GCNGC 9 cut(s) 373, 439, 751, 959, 962, 965, 1017, 1633, 1855
PleI GAGTC 4 cut(s) 1104, 1231, 1657, 1665
PmaCI CACGTG 1 cut(s) 414
PmlI CACGTG 1 cut(s) 414
PpsI GAGTC 4 cut(s) 1104, 1231, 1657, 1665
Ppu21I YACGTR 2 cut(s) 414, 1817
PpuMI RGGWCCY 1 cut(s) 1133
Psp124BI GAGCTC 1 cut(s) 2097
Psp1406I AACGTT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 1133
Psp6I CCWGG 1 cut(s) 241
PspCI CACGTG 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 1372
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 1524, 2029, 2071
PspPI GGNCC 3 cut(s) 522, 819, 1133
PspPPI RGGWCCY 1 cut(s) 1133
PstI CTGCAG 1 cut(s) 1441
PsuI RGATCY 6 cut(s) 345, 660, 1246, 1397, 2027, 2059
PsyI GACNNNGTC 2 cut(s) 1024, 1240
RsaI GTAC 3 cut(s) 860, 1160, 1524
RsaNI GTAC 3 cut(s) 859, 1159, 1523
SacI GAGCTC 1 cut(s) 2097
SaqAI TTAA 7 cut(s) 177, 228, 639, 657, 1005, 1055, 1637
SatI GCNGC 9 cut(s) 372, 438, 750, 958, 961, 964, 1016, 1632, 1854
Sau3AI GATC 9 cut(s) 345, 660, 733, 853, 1246, 1397, 1918, 2027, 2059
Sau96I GGNCC 3 cut(s) 522, 819, 1133
ScaI AGTACT 1 cut(s) 1160
SchI GAGTC 4 cut(s) 1105, 1231, 1658, 1666
ScrFI CCNGG 3 cut(s) 90, 243, 1319
SduI GDGCHC 3 cut(s) 1212, 2074, 2097
SfaNI GCATC 5 cut(s) 120, 358, 383, 892, 1618
SfcI CTRYAG 2 cut(s) 666, 1437
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 2 cut(s) 819, 1133
SmlI CTYRAG 5 cut(s) 351, 797, 828, 890, 1031
SmoI CTYRAG 5 cut(s) 351, 797, 828, 890, 1031
SnaBI TACGTA 1 cut(s) 1817
SphI GCATGC 1 cut(s) 710
SsiI CCGC 3 cut(s) 437, 557, 963
SspMI CTAG 4 cut(s) 291, 320, 1130, 1589
SstI GAGCTC 1 cut(s) 2097
StyD4I CCNGG 3 cut(s) 88, 241, 1317
StyI CCWWGG 3 cut(s) 531, 1170, 1359
TaaI ACNGT 5 cut(s) 1158, 1512, 1580, 1621, 2105
TaiI ACGT 5 cut(s) 416, 459, 1335, 1395, 1819
TaqI TCGA 6 cut(s) 265, 297, 648, 935, 1353, 1623
TaqII GACCGA 1 cut(s) 1089
TatI WGTACW 1 cut(s) 1158
TauI GCSGC 2 cut(s) 440, 966
TfiI GAWTC 4 cut(s) 423, 765, 1442, 1717
Tru1I TTAA 7 cut(s) 177, 228, 639, 657, 1005, 1055, 1637
Tru9I TTAA 7 cut(s) 177, 228, 639, 657, 1005, 1055, 1637
TscAI CASTG 6 cut(s) 69, 398, 411, 993, 1267, 1583
TseFI GTSAC 2 cut(s) 77, 1502
TseI GCWGC 7 cut(s) 371, 749, 957, 960, 1015, 1631, 1853
Tsp45I GTSAC 2 cut(s) 77, 1502
TspDTI ATGAA 7 cut(s) 824, 890, 1206, 1355, 1418, 1688, 2024
TspRI CASTG 6 cut(s) 69, 398, 411, 993, 1267, 1583
Tth111I GACNNNGTC 2 cut(s) 1024, 1240
Van91I CCANNNNNTGG 1 cut(s) 537
VpaK11BI GGWCC 2 cut(s) 819, 1133
XapI RAATTY 4 cut(s) 181, 653, 982, 1604
XceI RCATGY 1 cut(s) 710
XmiI GTMKAC 3 cut(s) 387, 550, 1063
XmnI GAANNNNTTC 4 cut(s) 422, 480, 597, 1939
XspI CTAG 4 cut(s) 291, 320, 1130, 1589
ZraI GACGTC 1 cut(s) 1333
ZrmI AGTACT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.