Rorug06G0451800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000203
Physical Location & Seq
Reverse (-)
58106635 .. 58109186
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0451800.1

Sequence Viewer

Length: 1056 bp
ATGAGTACAGGAGATCATGCAAATAAGGAGGACAATTTGCCACCAGGGTTTCGATTTCATCCAACAGATGAAGAACTAATCACGTATTATCTGATGAACAAGATATCAGATGCGACATTCACAGGAAGGGCAATCGCTGATGTTGATCTCAACAAATGTGAACCATGGGAACTTCCTGCAAAAGCGAAAATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTTCGAGATCGGAAATATCCAACCGGAGTAAGAACAAACCGAGCGACAAACACTGGTTACTGGAAGACCACAGGAAAAGACAAGGAGATCTTCAACAGTGCCACCTCTGAGTTGGTTGGGATGAAGAAAACGCTAGTTTTCTATAGAGGCCGAGCTCCCAGAGGCGAGAAATCCAACTGGGTTATGCACGAATATCGCATTCATGCCAAATCCAGCTTTAGACCGTCTAAGGATGAATGGGTAGTCTGCCGAGTCTTCCAGAAGAGTGCTGGTATTAAAAAGTACCCACCCTCAAACCAATCATCATCATCATCAAGAGCAGCAAATCCCTACAACCTGGAATTGATAGGTCCGAGTGTTAACGTAGTACAATCACCAATAATGCAGGTGGGTCATGAGCACCAGTTCCCTAACTATGGCAGAAACTACATGACCAATGCTGAGATGGCAGAGCTTTCCAGGGTCCTAAGAGGTGGTGGCATTGCTACTGGTTCAACCAGTAGCCCCATGAACCTTCCATTACTTCAACCCCAGTTCAACTACCCCAACATTGGAGGAGGAGGCTTCACAATTTCTGGGCTCAATTTGAACCTTGGGGGCCCATCAACTCAGTCTAATTTAAGGCCCATGCCTCCACTACATCAACCTCATCAGGCAATGAACCATCAACAAGATGTTGCCAACCCTTCGATGATGAGTAGTACTAGTGGTGCAGTTGGTCAAGATCAAGCTGGTTATGGTATAGACATGAACAATGGAAATGTGCCTGTAGGAAACAGATACATGAACGTGGTCGACCACTGCGTGGATCTTGATAACTACTGGCCGTCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

351

Amino Acids

39.14

Weight (kDa)

8.92

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 2.5e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccI GTMKAC 1 cut(s) 1014
AclWI GGATC 1 cut(s) 1035
AcoI YGGCCR 1 cut(s) 1043
AcuI CTGAAG 1 cut(s) 199
AdeI CACNNNGTG 1 cut(s) 1024
AfaI GTAC 5 cut(s) 7, 209, 503, 588, 922
AfiI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
AgsI TTSAA 5 cut(s) 313, 714, 746, 757, 808
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 3 cut(s) 43, 555, 677
AluBI AGCT 4 cut(s) 374, 435, 673, 950
AluI AGCT 4 cut(s) 374, 435, 673, 950
Alw21I GWGCWC 2 cut(s) 376, 621
AlwI GGATC 1 cut(s) 1035
AoxI GGCC 4 cut(s) 367, 817, 842, 1043
ApaI GGGCCC 1 cut(s) 821
ApeKI GCWGC 1 cut(s) 539
AspS9I GGNCC 5 cut(s) 569, 682, 817, 818, 843
AsuHPI GGTGA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 569, 682
BaeGI GKGCMC 1 cut(s) 821
BanII GRGCYC 3 cut(s) 376, 801, 821
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 2 cut(s) 290, 466
Bbv12I GWGCWC 2 cut(s) 376, 621
BbvI GCAGC 1 cut(s) 551
BccI CCATC 3 cut(s) 658, 829, 891
BceAI ACGGC 1 cut(s) 1030
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 45, 557, 679
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 2 cut(s) 353, 924
BfmI CTRYAG 2 cut(s) 361, 987
BfuAI ACCTGC 1 cut(s) 595
BglII AGATCT 1 cut(s) 306
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 922
Bme1390I CCNGG 3 cut(s) 45, 557, 679
Bme18I GGWCC 2 cut(s) 569, 682
BmgT120I GGNCC 5 cut(s) 569, 682, 817, 818, 843
BmiI GGNNCC 3 cut(s) 683, 818, 819
BmrFI CCNGG 3 cut(s) 45, 557, 679
BmrI ACTGGG 2 cut(s) 406, 745
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 2 cut(s) 406, 745
BpiI GAAGAC 2 cut(s) 290, 466
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 44, 164, 678, 811
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 770, 1024
Bse1I ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
Bse3DI GCAATG 2 cut(s) 699, 882
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 3 cut(s) 45, 557, 679
BseDI CCNNGG 4 cut(s) 44, 164, 678, 811
BseGI GGATG 3 cut(s) 58, 345, 457
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
BseMI GCAATG 2 cut(s) 699, 882
BseMII CTCAG 3 cut(s) 318, 651, 842
BseNI ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
BseRI GAGGAG 2 cut(s) 789, 792
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 951
BshFI GGCC 4 cut(s) 369, 819, 844, 1045
BsiHKAI GWGCWC 2 cut(s) 376, 621
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 4 cut(s) 369, 819, 844, 1045
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 4 cut(s) 376, 621, 801, 821
Bsp143I GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 4 cut(s) 369, 819, 844, 1045
BspCNI CTCAG 3 cut(s) 319, 652, 841
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 683, 818, 819
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 1035
BsrDI GCAATG 2 cut(s) 699, 882
BsrI ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
BssECI CCNNGG 4 cut(s) 44, 164, 678, 811
BssMI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
BssT1I CCWWGG 2 cut(s) 164, 811
Bst2UI CCWGG 3 cut(s) 45, 557, 679
Bst4CI ACNGT 2 cut(s) 317, 444
Bst6I CTCTTC 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 84
BstDEI CTNAG 5 cut(s) 327, 447, 660, 686, 828
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 58, 345, 457
BstKTI GATC 6 cut(s) 16, 148, 229, 309, 946, 1030
BstMBI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 3 cut(s) 45, 557, 679
BstSCI CCNGG 3 cut(s) 43, 555, 677
BstSFI CTRYAG 2 cut(s) 361, 987
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 2 cut(s) 290, 466
BstX2I RGATCY 2 cut(s) 306, 1027
BstYI RGATCY 2 cut(s) 306, 1027
BsuRI GGCC 4 cut(s) 369, 819, 844, 1045
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 58, 345, 457
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 3 cut(s) 270, 322, 1018
BveI ACCTGC 1 cut(s) 595
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 5 cut(s) 569, 682, 817, 818, 843
Csp6I GTAC 5 cut(s) 6, 208, 502, 587, 921
CviAII CATG 9 cut(s) 17, 165, 422, 614, 649, 727, 847, 967, 1003
CviQI GTAC 5 cut(s) 6, 208, 502, 587, 921
DdeI CTNAG 5 cut(s) 327, 447, 660, 686, 828
DpnI GATC 6 cut(s) 15, 147, 228, 308, 945, 1029
DpnII GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
DraIII CACNNNGTG 1 cut(s) 1024
EaeI YGGCCR 1 cut(s) 1043
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 164, 811
Eco24I GRGCYC 3 cut(s) 376, 801, 821
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 569, 682
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 682, 817
EcoRII CCWGG 3 cut(s) 43, 555, 677
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 164, 811
EcoT38I GRGCYC 3 cut(s) 376, 801, 821
ErhI CCWWGG 2 cut(s) 164, 811
FaeI CATG 9 cut(s) 20, 168, 425, 617, 652, 730, 850, 970, 1006
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 9 cut(s) 16, 164, 421, 613, 648, 726, 846, 966, 1002
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 3 cut(s) 45, 352, 464
FriOI GRGCYC 3 cut(s) 376, 801, 821
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 2 cut(s) 353, 924
GluI GCNGC 1 cut(s) 540
HaeIII GGCC 4 cut(s) 369, 819, 844, 1045
HapII CCGG 1 cut(s) 243
Hin1II CATG 9 cut(s) 20, 168, 425, 617, 652, 730, 850, 970, 1006
HincII GTYRAC 2 cut(s) 580, 1015
HindII GTYRAC 2 cut(s) 580, 1015
HinfI GANTC 1 cut(s) 471
HpaI GTTAAC 1 cut(s) 580
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 3 cut(s) 161, 580, 1015
Hpy188I TCNGA 5 cut(s) 93, 109, 231, 328, 573
Hpy188III TCNNGA 6 cut(s) 224, 478, 534, 614, 941, 1031
Hpy8I GTNNAC 3 cut(s) 161, 580, 1015
Hpy99I CGWCG 1 cut(s) 1051
HpyAV CCTTC 5 cut(s) 120, 193, 230, 743, 915
HpyCH4III ACNGT 2 cut(s) 317, 444
HpyCH4IV ACGT 3 cut(s) 83, 582, 1008
HpyCH4V TGCA 5 cut(s) 20, 179, 406, 604, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 5 cut(s) 327, 447, 660, 686, 828
HpySE526I ACGT 3 cut(s) 83, 582, 1008
Hsp92II CATG 9 cut(s) 20, 168, 425, 617, 652, 730, 850, 970, 1006
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 353, 924
MaeII ACGT 3 cut(s) 83, 582, 1008
MaeIII GTNAC 1 cut(s) 275
MalI GATC 6 cut(s) 15, 147, 228, 308, 945, 1029
MboI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
MboII GAAGA 7 cut(s) 83, 205, 295, 301, 355, 466, 493
MflI RGATCY 2 cut(s) 306, 1027
MhlI GDGCHC 4 cut(s) 376, 621, 801, 821
MluCI AATT 5 cut(s) 34, 560, 789, 802, 835
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 3 cut(s) 86, 263, 417
MseI TTAA 3 cut(s) 495, 579, 839
MslI CAYNNNNRTG 1 cut(s) 1007
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 45, 557, 679
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 45, 557, 679
MwoI GCNNNNNNNGC 1 cut(s) 665
NcoI CCATGG 1 cut(s) 164
NdeII GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
NlaIII CATG 9 cut(s) 20, 168, 425, 617, 652, 730, 850, 970, 1006
NlaIV GGNNCC 3 cut(s) 683, 818, 819
NmeAIII GCCGAG 2 cut(s) 395, 494
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 1020
PctI GAATGC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 3 cut(s) 43, 555, 677
PspGI CCWGG 3 cut(s) 43, 555, 677
PspN4I GGNNCC 3 cut(s) 683, 818, 819
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 5 cut(s) 569, 682, 817, 818, 843
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 2 cut(s) 306, 1027
RsaI GTAC 5 cut(s) 7, 209, 503, 588, 922
RsaNI GTAC 5 cut(s) 6, 208, 502, 587, 921
RseI CAYNNNNRTG 1 cut(s) 1007
SacI GAGCTC 1 cut(s) 376
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 3 cut(s) 495, 579, 839
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
Sau96I GGNCC 5 cut(s) 569, 682, 817, 818, 843
ScaI AGTACT 1 cut(s) 922
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 3 cut(s) 45, 557, 679
SduI GDGCHC 4 cut(s) 376, 621, 801, 821
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 361, 987
SinI GGWCC 2 cut(s) 569, 682
SmiMI CAYNNNNRTG 1 cut(s) 1007
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 5 cut(s) 34, 560, 789, 802, 835
SspMI CTAG 2 cut(s) 353, 924
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 43, 555, 677
StyI CCWWGG 2 cut(s) 164, 811
TaaI ACNGT 2 cut(s) 317, 444
TaiI ACGT 3 cut(s) 86, 585, 1011
TaqI TCGA 4 cut(s) 52, 223, 908, 1014
TasI AATT 5 cut(s) 34, 560, 789, 802, 835
TatI WGTACW 3 cut(s) 5, 586, 920
Tru1I TTAA 3 cut(s) 495, 579, 839
Tru9I TTAA 3 cut(s) 495, 579, 839
TscAI CASTG 3 cut(s) 277, 322, 1025
TseI GCWGC 1 cut(s) 539
TspRI CASTG 3 cut(s) 277, 322, 1025
Van91I CCANNNNNTGG 1 cut(s) 1024
VpaK11BI GGWCC 2 cut(s) 569, 682
XcmI CCANNNNNNNNNTGG 3 cut(s) 328, 485, 661
XmiI GTMKAC 1 cut(s) 1014
XspI CTAG 2 cut(s) 353, 924
ZrmI AGTACT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.