Prupe.8G185800_v2.0.a1

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000203
Physical Location & Seq
Reverse (-)
18366126 .. 18371084
4959 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G185800.1

Sequence Viewer

Length: 1089 bp
ATGAGTAAATGTGCTGGTCTGCCAATTGCAATTACGACTGTTGGAAGGGCACTAAAACATAAAAGCAAGAATGTGTGGAACGATGCACTTAGACAACTAACAAGGGCTTGCCCAGAAAACATTCCAGGAATGATACAAGAAGTGTATCCCAAAATAGAGTTGAGTTACGAATGTTTAGAAAGCCATGAGGCCAAAGCATGTTTCTTGCTCTGTTGTTTATATCCCGAAGGTTGTAATATACCAATTGAAGATTTGGTTAGATATGGGTGCGGGCTTAAGTTGTTCAAAAGCATCCACTCAATGGTAGAAGGAAGAAACAGTGTAGAAACATTGGTTGGCATACTCAAAACTTCTTCTTTGTTGGTAGACAGCAACAATGAAGGGTGTGTCAGGATGCATGATGAGGTGCGGGATGCAGCCTTATCAATAGCTTCTAAGAGTAGAGATGTACTTGTGGTAAGATACGGGACGGAACTGACTGGTTGGCCTAACAATTACGTTTCTGGGCAATACATCTCCAGTACACTGATAACAAATGAAACTCCTGAGCTTTTATTGTTGTCATGTCCAGATGAATGTTTATTGAAACCACTGGCCACTATTTTAGAAGGAATGGAAAATCTCAAGGTTTTAGTTATGAAGAACACATTTGTACTGCCAATACTGCCATCACTTCCACTTTTGAAAAACCTTCAGACGCTGTGTCTAGAGCATTGTAATCTGAATTTGGACATTGGACCTGTCATTGGAGAGCTACGAACACTCATGACACTCAGCCTGCGTGGATCTTACATGGAACAATTACCTGACGAATGCAAAAATTTGATTGATCTAAGGGTGCTGGATTTGACAGGATGCAATAGTCTTAAAGTAATTTCACCGGGTGTCATATCAAAGTTTTTTCTACTAGAAGAACTGTACATGTGGAATAACTTTGGGCAATGGGTGGTAGGGGATCAAACCCCTATTGTACTAGACCAACCATGCATGGATCGGGTGGAAGCCCAGTTAGAACAAGAACAAATAGACACATTGGAGGAAGAATTTCTGGGGTCACGACTCACGAGAAGAGCACACGATGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

363

Amino Acids

40.52

Weight (kDa)

5.04

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AccI GTMKAC 1 cut(s) 366
AciI CCGC 2 cut(s) 270, 409
AclWI GGATC 3 cut(s) 793, 963, 999
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 724, 820, 1043
AcuI CTGAAG 1 cut(s) 677
AdeI CACNNNGTG 1 cut(s) 884
AfaI GTAC 5 cut(s) 450, 523, 654, 920, 972
AfiI CCNNNNNNNGG 2 cut(s) 301, 746
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 921
AgsI TTSAA 4 cut(s) 248, 286, 586, 685
AhdI GACNNNNNGTC 1 cut(s) 702
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 4 cut(s) 185, 217, 318, 350
AluBI AGCT 3 cut(s) 431, 550, 754
AluI AGCT 3 cut(s) 431, 550, 754
Alw21I GWGCWC 1 cut(s) 1075
AlwI GGATC 3 cut(s) 793, 963, 999
AlwNI CAGNNNCTG 1 cut(s) 700
AoxI GGCC 3 cut(s) 189, 485, 594
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 3 cut(s) 724, 820, 1043
Asp700I GAANNNNTTC 2 cut(s) 120, 1044
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 1 cut(s) 870
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 596
BauI CACGAG 1 cut(s) 1063
Bbv12I GWGCWC 1 cut(s) 1075
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 882
BfaI CTAG 3 cut(s) 707, 908, 974
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 2 cut(s) 126, 882
Bme18I GGWCC 1 cut(s) 737
BmeRI GACNNNNNGTC 1 cut(s) 702
BmgT120I GGNCC 1 cut(s) 737
BmrFI CCNGG 2 cut(s) 126, 882
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 5 cut(s) 73, 300, 384, 403, 845
BmuI ACTGGG 1 cut(s) 1000
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 882
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 746
Bse1I ACTGG 4 cut(s) 484, 519, 597, 1006
Bse3DI GCAATG 1 cut(s) 947
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 4 cut(s) 291, 399, 418, 860
BseLI CCNNNNNNNGG 2 cut(s) 301, 746
BseMI GCAATG 1 cut(s) 947
BseMII CTCAG 2 cut(s) 537, 787
BseNI ACTGG 4 cut(s) 484, 519, 597, 1006
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 3 cut(s) 191, 487, 596
BsiHKAI GWGCWC 1 cut(s) 1075
BsiSI CCGG 1 cut(s) 881
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 301, 746
BsmFI GGGAC 1 cut(s) 481
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 3 cut(s) 191, 487, 596
Bsp1286I GDGCHC 2 cut(s) 52, 1075
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 4 cut(s) 785, 829, 955, 991
BspACI CCGC 2 cut(s) 270, 409
BspANI GGCC 3 cut(s) 191, 487, 596
BspCNI CTCAG 2 cut(s) 538, 786
BspHI TCATGA 1 cut(s) 765
BspPI GGATC 3 cut(s) 793, 963, 999
BspQI GCTCTTC 1 cut(s) 1063
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 4 cut(s) 484, 519, 597, 1006
BssMI GATC 4 cut(s) 785, 829, 955, 991
BssSI CACGAG 1 cut(s) 1063
Bst2BI CACGAG 1 cut(s) 1063
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 40, 320, 918
Bst6I CTCTTC 1 cut(s) 1063
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 3 cut(s) 109, 272, 779
BstDEI CTNAG 5 cut(s) 89, 435, 546, 773, 833
BstF5I GGATG 4 cut(s) 291, 399, 418, 860
BstKTI GATC 4 cut(s) 788, 832, 958, 994
BstMBI GATC 4 cut(s) 785, 829, 955, 991
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 2 cut(s) 201, 925
BstSCI CCNGG 2 cut(s) 124, 880
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 3 cut(s) 191, 487, 596
BtsCI GGATG 4 cut(s) 291, 399, 418, 860
BtsIMutI CAGTG 3 cut(s) 325, 524, 590
Cac8I GCNNGC 3 cut(s) 109, 272, 779
CaiI CAGNNNCTG 1 cut(s) 700
CciI TCATGA 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 737
CseI GACGC 1 cut(s) 706
Csp6I GTAC 5 cut(s) 449, 522, 653, 919, 971
CviAII CATG 9 cut(s) 185, 198, 398, 564, 766, 793, 922, 984, 988
CviQI GTAC 5 cut(s) 449, 522, 653, 919, 971
DdeI CTNAG 5 cut(s) 89, 435, 546, 773, 833
DpnI GATC 4 cut(s) 787, 831, 957, 993
DpnII GATC 4 cut(s) 785, 829, 955, 991
DraIII CACNNNGTG 1 cut(s) 884
DriI GACNNNNNGTC 1 cut(s) 702
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 1063
Eam1105I GACNNNNNGTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 2 cut(s) 399, 989
FaeI CATG 9 cut(s) 188, 201, 401, 567, 769, 796, 925, 987, 991
FaqI GGGAC 1 cut(s) 481
FatI CATG 9 cut(s) 184, 197, 397, 563, 765, 792, 921, 983, 987
FauI CCCGC 2 cut(s) 263, 402
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 4 cut(s) 278, 406, 425, 867
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 3 cut(s) 707, 908, 974
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 3 cut(s) 191, 487, 596
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 706
Hin1II CATG 9 cut(s) 188, 201, 401, 567, 769, 796, 925, 987, 991
HinfI GANTC 1 cut(s) 1059
HpaII CCGG 1 cut(s) 881
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 2 cut(s) 367, 524
Hpy188I TCNGA 2 cut(s) 696, 723
Hpy188III TCNNGA 8 cut(s) 224, 391, 545, 569, 707, 766, 1056, 1063
Hpy8I GTNNAC 2 cut(s) 367, 524
HpyAV CCTTC 6 cut(s) 39, 221, 302, 374, 602, 701
HpyCH4III ACNGT 3 cut(s) 40, 320, 918
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 7 cut(s) 29, 86, 397, 416, 816, 858, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
HpyF3I CTNAG 5 cut(s) 89, 435, 546, 773, 833
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 9 cut(s) 188, 201, 401, 567, 769, 796, 925, 987, 991
Kzo9I GATC 4 cut(s) 785, 829, 955, 991
LguI GCTCTTC 1 cut(s) 1063
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 5 cut(s) 73, 300, 384, 403, 845
MaeI CTAG 3 cut(s) 707, 908, 974
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 164, 1053
MalI GATC 4 cut(s) 787, 831, 957, 993
MboI GATC 4 cut(s) 785, 829, 955, 991
MboII GAAGA 7 cut(s) 260, 324, 345, 652, 923, 1052, 1080
MfeI CAATTG 2 cut(s) 24, 243
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 2 cut(s) 52, 1075
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 9 cut(s) 24, 30, 243, 493, 724, 800, 820, 873, 1043
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 1053
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 3 cut(s) 181, 397, 1030
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 2 cut(s) 399, 989
MroXI GAANNNNTTC 2 cut(s) 120, 1044
MscI TGGCCA 1 cut(s) 596
MseI TTAA 2 cut(s) 276, 867
Msp20I TGGCCA 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 2 cut(s) 126, 882
MunI CAATTG 2 cut(s) 24, 243
Mva1269I GAATGC 1 cut(s) 818
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 664
NciI CCSGG 1 cut(s) 882
NdeII GATC 4 cut(s) 785, 829, 955, 991
NlaIII CATG 9 cut(s) 188, 201, 401, 567, 769, 796, 925, 987, 991
NmuCI GTSAC 1 cut(s) 1053
NsiI ATGCAT 2 cut(s) 399, 989
NspI RCATGY 2 cut(s) 201, 925
PagI TCATGA 1 cut(s) 765
PciI ACATGT 1 cut(s) 921
PciSI GCTCTTC 1 cut(s) 1063
PctI GAATGC 1 cut(s) 818
PdmI GAANNNNTTC 2 cut(s) 120, 1044
PflMI CCANNNNNTGG 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 1053
PpsI GAGTC 1 cut(s) 1053
PscI ACATGT 1 cut(s) 921
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 785
RsaI GTAC 5 cut(s) 450, 523, 654, 920, 972
RsaNI GTAC 5 cut(s) 449, 522, 653, 919, 971
SapI GCTCTTC 1 cut(s) 1063
SaqAI TTAA 2 cut(s) 276, 867
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 4 cut(s) 785, 829, 955, 991
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 1 cut(s) 1053
ScrFI CCNGG 2 cut(s) 126, 882
SduI GDGCHC 2 cut(s) 52, 1075
SfaNI GCATC 5 cut(s) 73, 300, 384, 403, 845
SinI GGWCC 1 cut(s) 737
SmlI CTYRAG 2 cut(s) 275, 623
SmoI CTYRAG 2 cut(s) 275, 623
Sse9I AATT 9 cut(s) 24, 30, 243, 493, 724, 800, 820, 873, 1043
SsiI CCGC 2 cut(s) 270, 409
SspMI CTAG 3 cut(s) 707, 908, 974
StyD4I CCNGG 2 cut(s) 124, 880
TaaI ACNGT 3 cut(s) 40, 320, 918
TaiI ACGT 1 cut(s) 501
TasI AATT 9 cut(s) 24, 30, 243, 493, 724, 800, 820, 873, 1043
TatI WGTACW 5 cut(s) 448, 521, 652, 918, 970
Tru1I TTAA 2 cut(s) 276, 867
Tru9I TTAA 2 cut(s) 276, 867
TscAI CASTG 3 cut(s) 325, 531, 597
TseFI GTSAC 1 cut(s) 1053
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 1053
TspDTI ATGAA 4 cut(s) 393, 552, 588, 653
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 3 cut(s) 325, 531, 597
Van91I CCANNNNNTGG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 3 cut(s) 724, 820, 1043
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 2 cut(s) 201, 925
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 2 cut(s) 120, 1044
XspI CTAG 3 cut(s) 707, 908, 974
Zsp2I ATGCAT 2 cut(s) 399, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.