Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000203

Physical Location & Seq

Genomic Coordinates Forward (+)

26919846 .. 26923025

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

ATGGCAGAGTTAGGTATTACAGAAGTTGCTGTGCCAGTTGCAAAATGGACAGTGAAAAAACTTTGGCAAGAGTTGGGTTATATGTTTTGTTACAAAAGCAACATTGCGGATCTCAACGAGCAGGTTCAGCAGCTGCGTCACAAAAAAGATGGAATAGAGCTGGAGGAGAAAAGTGCAAGAGAAGCCTCACAGATTATTGATGGCCAAGTTATTGATTGGCTGGTCAAGGCAGACGAGCAAATAAAAGAAAAGGAGACGACTTTCAGTGAAGAAACTGTAGCAGCAAGGGCGGCATGCTGTAATGGATGGCTTCTAAATTTGAAGGGCCGTTTTTCTCTGGGAAGGAATGCTAAGAAGATGACTGAGAAGGTTGATCAGCTCCTTACTACAGATCTCGGGATTATAGCCCATCCTGCTCCTCACGCAAAGGTGGAATTCCGACCCACAGAGGACTCTACTCAGCTTGGAACCAACTTCAATGAAGGTGCCAGCTCGTCTGGAACATCAAACCATGAACAGCCACCTGCATCTGAGAGGAAAAATATTTATTTTGATTCAAGAAGATCAACCTTCGCGGATGTGATGGAAGCTCTCAGGGGGAATCAAATCAATCCAATTATCATATGTGGCATGGGCGGCATAGGGAAGACAACATTGATGGGACAAGTTTTTGAGAAAGCAAAGGAAGAAGGTCTGTTTGATGAGTATACAAAGGCAACCGTTAAGGAATCTCTTGACAAAACTGCTGAGTTGAGTCTTATTCAAGATGAGCTTGCTGGATATCTAGGCCTGCCACTTAAAGGAAAGCAGACGGATGCAAGAGCAACTGAGCTACGTCAAAGATTCTCTCAAGGCAGCAAGAAGATCCTTGTAATGTTAGACAATGTTTGGACAACAACCCCCGACTTTTTGTGGGACATAGGGATTCCCACTGGTTGCAAACTTCTGGTAACATCAAGACAACAAGACCTTTTCAAGGACATGGACACAGGAAAGATTTTCCCGATTCATGGCTTGCCGGATGGAGATGCCTGGAGTCTGTTCAAGAAGACAGCAGGAAGTTCCATCGAATCTGATCCCGAGGTGCATGTTGTAGCAAAAAAGGTTTTGAAGGAATGTGGTGGGTTGCCAATTGCAATTTCGACGGTTGGGACGGCACTAAAAGGAGAAAGCATTGGAATTTGGAAGAATGCACAAAGGGAACTAGAAAAGGCTAGACCGAAGAACGTTGCAGGAGTGATAGAACATGTGTATGGGCCAATAAAGTTCAGCTATGATAGTTTATCAAGTGATGAAGCCAAGTCATGTTTTCTGCTGTGTTGCATATTTGAAGAAAGCGCCCATATAGTGATTGAAGATTTGGTGAGATATGGGCTTGGGCTTGGGCTCTTTGAAGACATTGATTCAATGGTTGAAGGGAGAAACCGTGTGGAAACATTGGTTCAGACACTCAAAAGTCGCTTTCTATTGTTAGATAGCGATAAAGAAGAGTATGTGAGAATGCATGACGTGGTGCGTGATGTTGCCATGCATATAGCCTCGGAAGAGTTTGTAGAAAAGAAAAGTGATGGGGTTGAAAAGAGAATAGTTGTGAGAGACAAAGCAGCAACCTTGAAGTTGATGGATTGGCCTCGGGATAGTGATTCTGAGAAATCTACTTATTGCAGTTCACTGGATATCAGTGGGTTTTGTCAGCTTTTACTGTTGAGACAAATAGCTTGGTTTCCAATGCGGCCGCCACCCAGAATTTTCAAAAGAACGAAAGATCTCCAGGTTCTAACAATCAGTGGATATCGTATGGAGAGTCCGACTTTGTTAGTAGACTCGGTACTGTCATCGCTTGCAGTAATGAGAAACCTTCAAACACTGCGCGTAGAGAGGTGCGAATTCAACTGTGATGTATCTGTCATTGGGGAGCTAAAGACACTCATGATACTCAGTCTACGTGGATGTCGGGGACTCAAGCAATTGCCTGATGCATTTAAAAACTTGTCTGATCTGAGACTGCTTGATTTGACGGATTGCAGGAAGCTTGAAGTAATATCACCAGGTGTGATATCAAGTTTAACAAGACTAGAAGAATTGTACATGTTGGATAGCTTTAAAAATTGGGAGGTTGAGAAACTAGCCTCCACCGAAACAACCGAGTGGATCTCTCAATTGGAGCAGGAAAGAGGTGCTGCTGGATACCATAAAGTGGAAGCATACGCGGAAACTACACTAAACACGTGGAAGGAACTCATTGAATTGGCGGTTGAGCAACCAGCAGCTGTAGGATGGCAGTTTAGAGAAGAGGTTCGAGAACCTTTTAGACAAAACGAGGATCATACAAGGTGGGCCAACTCGATGGACTGGAACACTGGGACACTTGCAGAGCTGCTTTCCTTGTCCCGTTTGACAACTTTACAAGTCGTTCTCCCACCGCTCAATATACTTCTAACCACCACGTTGTTTAACAAGCTTGAAAGATTTCACATCGCTATTGGATGGAAGGAGTACATGTCTTATGAGGAAATAGAGAAGGAGCAGAGTGGCAACTACTTGAGAGTTCACCATCTTGATGTAAGCAGCGCTGCAATGGGTAGTGGAGTCACTTCGTTGCTAGAGAAAGCCAGCTATGTTGACTTTAAATTGACTCGGCCTCAACTTCTGAATGTCTTGGATAGAGTCTGTTTCCCGAAGACGAAGCGTCTTAAGTTCCAGGACTGTAATGATGTGGAGTATCTGATTGACACGGCTACTACTTCACATAGCAGCAGCGCCATCTTTCCTGTCTTGAATTCACTGGAGATTAGTACGGCAAGGAGGCTGAAAGAGATTTTTCATGGTGAACTGCCAACGGGGTTTCTCAAGCAACTACGTACATTGATATTATCCAACCTACGTGAATTGACCTATATTTGGAAGACCAACAGTCGATCTCAACATGATAATGAGGAAGTGATCAACTTCCAAAGTCTGACAGAATTACGTCTCTCATACTTACCAAGATTCACTGGCATAACCAAAAATGCCTCTAAGGGGTCGGAGAGGCTACCAGAAGACAGCAGCCCGGAACAATCTGACTTCACCGTACTATCTCTGTTCGACACCAAGGTACGTATTTTTGCCCTTTTCTCTTGTGCTCATAACTCTATCTTCACTCTGCTTTGTGCTCAAACTTTTAACTCCTTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

1060

Amino Acids

119.65

Weight (kDa)

5.72

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	193 - 353	2.5e-18	NB-ARC domain
LRR_8	PF13855	642 - 697	3.4e-06	Leucine rich repeat
LRR_RPS2	PF23247	888 - 992	3.2e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica	Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis	pycom05g14750
rosa_chinensis	RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata	RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora	Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii	Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa	Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha	Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana	Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	2 cut(s)	112, 532
AccB1I	GGYRCC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	2197
AccBSI	CCGCTC	1 cut(s)	2425
AccI	GTMKAC	3 cut(s)	707, 1821, 1942
AccII	CGCG	3 cut(s)	575, 1872, 2210
AciI	CCGC	9 cut(s)	107, 290, 575, 636, 1732, 1736, 2210, 2252, 2423
AclI	AACGTT	1 cut(s)	1227
AclWI	GGATC	5 cut(s)	117, 859, 1070, 2159, 2331
AcoI	YGGCCR	2 cut(s)	202, 1733
AcsI	RAATTY	6 cut(s)	316, 434, 1179, 1746, 1886, 2779
AcvI	CACGTG	1 cut(s)	2229
AdeI	CACNNNGTG	1 cut(s)	2051
AfaI	GTAC	7 cut(s)	1830, 2087, 2498, 2797, 2863, 3075, 3099
AfeI	AGCGCT	1 cut(s)	2572
AfiI	CCNNNNNNNGG	6 cut(s)	800, 976, 1010, 2197, 2901, 3021
AflII	CTTAAG	1 cut(s)	2693
AflIII	ACRYGT	4 cut(s)	1246, 2088, 2226, 2499
AhdI	GACNNNNNGTC	2 cut(s)	2688, 2913
AjiI	CACGTC	1 cut(s)	1510
AjnI	CCWGG	4 cut(s)	1031, 1770, 2047, 2700
AjuI	GAANNNNNNNTTGG	2 cut(s)	1123, 1155
Alw21I	GWGCWC	2 cut(s)	3127, 3157
Alw26I	GTCTC	5 cut(s)	248, 1590, 1702, 1996, 2978
AlwI	GGATC	5 cut(s)	117, 859, 1070, 2159, 2331
AlwNI	CAGNNNCTG	2 cut(s)	133, 2270
Ama87I	CYCGRG	3 cut(s)	395, 1079, 1632
Aor51HI	AGCGCT	1 cut(s)	2572
AoxI	GGCC	8 cut(s)	202, 325, 787, 1256, 1628, 1733, 2337, 2639
ApoI	RAATTY	6 cut(s)	316, 434, 1179, 1746, 1886, 2779
Asp700I	GAANNNNTTC	2 cut(s)	2295, 2469
AspLEI	GCGC	4 cut(s)	1340, 1872, 2573, 2762
AspS9I	GGNCC	3 cut(s)	325, 1256, 2337
AsuC2I	CCSGG	1 cut(s)	3053
AsuHPI	GGTGA	5 cut(s)	1375, 2037, 2543, 2840, 3061
AvaI	CYCGRG	3 cut(s)	395, 1079, 1632
BalI	TGGCCA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	1389
BbrPI	CACGTG	1 cut(s)	2229
BbsI	GAAGAC	6 cut(s)	653, 1055, 1401, 2687, 2912, 3048
Bbv12I	GWGCWC	2 cut(s)	3127, 3157
BceAI	ACGGC	4 cut(s)	312, 1170, 2751, 2814
BciT130I	CCWGG	4 cut(s)	1033, 1772, 2049, 2702
BciVI	GTATCC	1 cut(s)	2180
BclI	TGATCA	2 cut(s)	373, 2943
BcnI	CCSGG	1 cut(s)	3053
BcoDI	GTCTC	5 cut(s)	248, 1590, 1702, 1996, 2978
BfaI	CTAG	6 cut(s)	785, 1205, 1215, 2075, 2126, 2603
BfmI	CTRYAG	3 cut(s)	276, 387, 2271
BfoI	RGCGCY	3 cut(s)	1341, 2574, 2763
BfrI	CTTAAG	1 cut(s)	2693
BfuAI	ACCTGC	2 cut(s)	112, 532
BfuI	GTATCC	1 cut(s)	2180
BglII	AGATCT	2 cut(s)	391, 1765
Bme1390I	CCNGG	5 cut(s)	1033, 1772, 2049, 2702, 3053
BmeRI	GACNNNNNGTC	2 cut(s)	2688, 2913
BmeT110I	CYCGRG	3 cut(s)	395, 1079, 1632
BmgBI	CACGTC	1 cut(s)	1510
BmgT120I	GGNCC	3 cut(s)	325, 1256, 2337
BmiI	GGNNCC	2 cut(s)	469, 487
BmrFI	CCNGG	5 cut(s)	1033, 1772, 2049, 2702, 3053
BmrI	ACTGGG	1 cut(s)	2370
BmsI	GCATC	4 cut(s)	536, 805, 1018, 1966
BmuI	ACTGGG	1 cut(s)	2370
BpiI	GAAGAC	6 cut(s)	653, 1055, 1401, 2687, 2912, 3048
BplI	GAGNNNNNCTC	2 cut(s)	2138, 2170
BpmI	CTGGAG	4 cut(s)	182, 1054, 1754, 2807
BpuEI	CTTGAG	4 cut(s)	834, 1946, 2563, 2834
BpuMI	CCSGG	1 cut(s)	3053
BsaAI	YACGTR	5 cut(s)	1946, 2229, 2861, 2885, 3101
BsaJI	CCNNGG	4 cut(s)	1080, 1539, 1631, 3093
BsaXI	ACNNNNNCTCC	4 cut(s)	1411, 1441, 2486, 2516
Bsc4I	CCNNNNNNNGG	6 cut(s)	800, 976, 1010, 2197, 2901, 3021
Bse1I	ACTGG	7 cut(s)	35, 937, 1677, 2357, 2365, 2790, 3001
Bse3DI	GCAATG	2 cut(s)	102, 2583
BseBI	CCWGG	4 cut(s)	1033, 1772, 2049, 2702
BseDI	CCNNGG	4 cut(s)	1080, 1539, 1631, 3093
BseGI	GGATG	8 cut(s)	311, 409, 583, 820, 1027, 1955, 2282, 2492
BseLI	CCNNNNNNNGG	6 cut(s)	800, 976, 1010, 2197, 2901, 3021
BseMI	GCAATG	2 cut(s)	102, 2583
BseMII	CTCAG	9 cut(s)	354, 473, 522, 607, 738, 819, 1638, 1951, 1991
BseNI	ACTGG	7 cut(s)	35, 937, 1677, 2357, 2365, 2790, 3001
BseRI	GAGGAG	2 cut(s)	179, 408
BseX3I	CGGCCG	1 cut(s)	1733
Bsh1236I	CGCG	3 cut(s)	575, 1872, 2210
Bsh1285I	CGRYCG	1 cut(s)	1736
BshFI	GGCC	8 cut(s)	204, 327, 789, 1258, 1630, 1735, 2339, 2641
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	1736
BsiHKAI	GWGCWC	2 cut(s)	3127, 3157
BsiHKCI	CYCGRG	3 cut(s)	395, 1079, 1632
BsiSI	CCGG	2 cut(s)	1019, 3053
BslFI	GGGAC	6 cut(s)	675, 929, 1165, 1971, 2374, 2377
BslI	CCNNNNNNNGG	6 cut(s)	800, 976, 1010, 2197, 2901, 3021
BsmAI	GTCTC	5 cut(s)	248, 1590, 1702, 1996, 2978
BsmBI	CGTCTC	2 cut(s)	248, 2978
BsmFI	GGGAC	6 cut(s)	675, 929, 1165, 1971, 2374, 2377
BsmI	GAATGC	3 cut(s)	352, 1195, 1506
BsnI	GGCC	8 cut(s)	204, 327, 789, 1258, 1630, 1735, 2339, 2641
BsoBI	CYCGRG	3 cut(s)	395, 1079, 1632
Bsp1286I	GDGCHC	3 cut(s)	1389, 3127, 3157
Bsp1407I	TGTACA	1 cut(s)	2085
BspACI	CCGC	9 cut(s)	107, 290, 575, 636, 1732, 1736, 2210, 2252, 2423
BspANI	GGCC	8 cut(s)	204, 327, 789, 1258, 1630, 1735, 2339, 2641
BspCNI	CTCAG	9 cut(s)	355, 472, 523, 606, 739, 820, 1639, 1950, 1992
BspFNI	CGCG	3 cut(s)	575, 1872, 2210
BspHI	TCATGA	1 cut(s)	1929
BspLI	GGNNCC	2 cut(s)	469, 487
BspMI	ACCTGC	2 cut(s)	112, 532
BspPI	GGATC	5 cut(s)	117, 859, 1070, 2159, 2331
BspT107I	GGYRCC	1 cut(s)	485
BspTI	CTTAAG	1 cut(s)	2693
BsrBI	CCGCTC	1 cut(s)	2425
BsrDI	GCAATG	2 cut(s)	102, 2583
BsrGI	TGTACA	1 cut(s)	2085
BsrI	ACTGG	7 cut(s)	35, 937, 1677, 2357, 2365, 2790, 3001
BssECI	CCNNGG	4 cut(s)	1080, 1539, 1631, 3093
BssNAI	GTATAC	1 cut(s)	708
BssT1I	CCWWGG	1 cut(s)	3093
Bst1107I	GTATAC	1 cut(s)	708
Bst2UI	CCWGG	4 cut(s)	1033, 1772, 2049, 2702
Bst6I	CTCTTC	3 cut(s)	1482, 1539, 2286
BstAFI	CTTAAG	1 cut(s)	2693
BstAUI	TGTACA	1 cut(s)	2085
BstBAI	YACGTR	5 cut(s)	1946, 2229, 2861, 2885, 3101
BstC8I	GCNNGC	7 cut(s)	295, 490, 774, 791, 1016, 1842, 2614
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	8 cut(s)	311, 409, 583, 820, 1027, 1955, 2282, 2492
BstFNI	CGCG	3 cut(s)	575, 1872, 2210
BstH2I	RGCGCY	3 cut(s)	1341, 2574, 2763
BstHHI	GCGC	4 cut(s)	1340, 1872, 2573, 2762
BstMAI	GTCTC	5 cut(s)	248, 1590, 1702, 1996, 2978
BstMCI	CGRYCG	1 cut(s)	1736
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 182, 287, 290, 413, 422, 636
BstNI	CCWGG	4 cut(s)	1033, 1772, 2049, 2702
BstNSI	RCATGY	5 cut(s)	297, 1091, 1250, 2092, 2503
BstSCI	CCNGG	5 cut(s)	1031, 1770, 2047, 2700, 3051
BstSFI	CTRYAG	3 cut(s)	276, 387, 2271
BstSNI	TACGTA	2 cut(s)	2861, 3101
BstUI	CGCG	3 cut(s)	575, 1872, 2210
BstV2I	GAAGAC	6 cut(s)	653, 1055, 1401, 2687, 2912, 3048
BstX2I	RGATCY	5 cut(s)	109, 391, 864, 1765, 2151
BstXI	CCANNNNNNTGG	1 cut(s)	2347
BstYI	RGATCY	5 cut(s)	109, 391, 864, 1765, 2151
BstZ17I	GTATAC	1 cut(s)	708
BstZI	CGGCCG	1 cut(s)	1733
BsuI	GTATCC	1 cut(s)	2180
BsuRI	GGCC	8 cut(s)	204, 327, 789, 1258, 1630, 1735, 2339, 2641
BtgZI	GCGATG	2 cut(s)	1821, 2461
BtrI	CACGTC	1 cut(s)	1510
BtsCI	GGATG	8 cut(s)	311, 409, 583, 820, 1027, 1955, 2282, 2492
BtsI	GCAGTG	1 cut(s)	1865
BveI	ACCTGC	2 cut(s)	112, 532
Cac8I	GCNNGC	7 cut(s)	295, 490, 774, 791, 1016, 1842, 2614
CaiI	CAGNNNCTG	2 cut(s)	133, 2270
CciI	TCATGA	1 cut(s)	1929
CciNI	GCGGCCGC	1 cut(s)	1733
CfoI	GCGC	4 cut(s)	1340, 1872, 2573, 2762
Cfr13I	GGNCC	3 cut(s)	325, 1256, 2337
CseI	GACGC	2 cut(s)	125, 2678
CsiI	ACCWGGT	1 cut(s)	2047
Csp6I	GTAC	7 cut(s)	1829, 2086, 2497, 2796, 2862, 3074, 3098
CviQI	GTAC	7 cut(s)	1829, 2086, 2497, 2796, 2862, 3074, 3098
DraI	TTTAAA	3 cut(s)	1984, 2104, 2629
DraIII	CACNNNGTG	1 cut(s)	2051
DriI	GACNNNNNGTC	2 cut(s)	2688, 2913
EaeI	YGGCCR	2 cut(s)	202, 1733
EagI	CGGCCG	1 cut(s)	1733
Eam1104I	CTCTTC	3 cut(s)	1482, 1539, 2286
Eam1105I	GACNNNNNGTC	2 cut(s)	2688, 2913
EarI	CTCTTC	3 cut(s)	1482, 1539, 2286
EclXI	CGGCCG	1 cut(s)	1733
Eco105I	TACGTA	2 cut(s)	2861, 3101
Eco130I	CCWWGG	1 cut(s)	3093
Eco147I	AGGCCT	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	1389
Eco32I	GATATC	4 cut(s)	782, 1678, 1793, 2058
Eco47III	AGCGCT	1 cut(s)	2572
Eco52I	CGGCCG	1 cut(s)	1733
Eco72I	CACGTG	1 cut(s)	2229
Eco88I	CYCGRG	3 cut(s)	395, 1079, 1632
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoRI	GAATTC	3 cut(s)	434, 1886, 2779
EcoRII	CCWGG	4 cut(s)	1031, 1770, 2047, 2700
EcoRV	GATATC	4 cut(s)	782, 1678, 1793, 2058
EcoT14I	CCWWGG	1 cut(s)	3093
EcoT22I	ATGCAT	3 cut(s)	1506, 1533, 1981
EcoT38I	GRGCYC	1 cut(s)	1389
ErhI	CCWWGG	1 cut(s)	3093
Esp3I	CGTCTC	2 cut(s)	248, 2978
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	6 cut(s)	675, 929, 1165, 1971, 2374, 2377
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	2 cut(s)	373, 2943
FblI	GTMKAC	3 cut(s)	707, 1821, 1942
FokI	GGATG	8 cut(s)	318, 396, 590, 827, 1034, 1962, 2289, 2499
FriOI	GRGCYC	1 cut(s)	1389
FspBI	CTAG	6 cut(s)	785, 1205, 1215, 2075, 2126, 2603
GlaI	GCGC	4 cut(s)	1339, 1871, 2572, 2761
GsuI	CTGGAG	4 cut(s)	182, 1054, 1754, 2807
HaeII	RGCGCY	3 cut(s)	1341, 2574, 2763
HaeIII	GGCC	8 cut(s)	204, 327, 789, 1258, 1630, 1735, 2339, 2641
HapII	CCGG	2 cut(s)	1019, 3053
HgaI	GACGC	2 cut(s)	125, 2678
HhaI	GCGC	4 cut(s)	1340, 1872, 2573, 2762
Hin6I	GCGC	4 cut(s)	1338, 1870, 2571, 2760
HinP1I	GCGC	4 cut(s)	1338, 1870, 2571, 2760
HincII	GTYRAC	1 cut(s)	2623
HindII	GTYRAC	1 cut(s)	2623
HindIII	AAGCTT	2 cut(s)	2030, 2459
HpaII	CCGG	2 cut(s)	1019, 3053
HphI	GGTGA	5 cut(s)	1375, 2037, 2543, 2840, 3061
Hpy166II	GTNNAC	7 cut(s)	708, 1670, 1822, 1943, 2551, 2623, 2831
Hpy8I	GTNNAC	7 cut(s)	708, 1670, 1822, 1943, 2551, 2623, 2831
Hpy99I	CGWCG	1 cut(s)	1147
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 182, 287, 290, 413, 422, 636
HspAI	GCGC	4 cut(s)	1338, 1870, 2571, 2760
Ksp22I	TGATCA	2 cut(s)	373, 2943
LmnI	GCTCC	5 cut(s)	384, 421, 1915, 2164, 2524
LweI	GCATC	4 cut(s)	536, 805, 1018, 1966
MabI	ACCWGGT	1 cut(s)	2047
MaeI	CTAG	6 cut(s)	785, 1205, 1215, 2075, 2126, 2603
MaeIII	GTNAC	4 cut(s)	89, 137, 949, 2590
MbiI	CCGCTC	1 cut(s)	2425
MfeI	CAATTG	3 cut(s)	1131, 1967, 2159
MflI	RGATCY	5 cut(s)	109, 391, 864, 1765, 2151
MhlI	GDGCHC	3 cut(s)	1389, 3127, 3157
MlsI	TGGCCA	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	9 cut(s)	446, 763, 1045, 1813, 1817, 1953, 2598, 2629, 2676
MmeI	TCCRAC	5 cut(s)	463, 1832, 2073, 2901, 3006
Mox20I	TGGCCA	1 cut(s)	204
Mph1103I	ATGCAT	3 cut(s)	1506, 1533, 1981
MroXI	GAANNNNTTC	2 cut(s)	2295, 2469
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	9 cut(s)	723, 798, 1983, 2066, 2103, 2454, 2628, 2694, 3165
MslI	CAYNNNNRTG	3 cut(s)	1251, 2559, 2931
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	133, 2270
MspCI	CTTAAG	1 cut(s)	2693
MspI	CCGG	2 cut(s)	1019, 3053
MspR9I	CCNGG	5 cut(s)	1033, 1772, 2049, 2702, 3053
MunI	CAATTG	3 cut(s)	1131, 1967, 2159
Mva1269I	GAATGC	3 cut(s)	352, 1195, 1506
MvaI	CCWGG	4 cut(s)	1033, 1772, 2049, 2702
MvnI	CGCG	3 cut(s)	575, 1872, 2210
MwoI	GCNNNNNNNGC	7 cut(s)	127, 182, 287, 290, 413, 422, 636
NciI	CCSGG	1 cut(s)	3053
NdeI	CATATG	1 cut(s)	623
NlaIV	GGNNCC	2 cut(s)	469, 487
NmeAIII	GCCGAG	1 cut(s)	2617
NmuCI	GTSAC	2 cut(s)	137, 2590
NotI	GCGGCCGC	1 cut(s)	1733
NsiI	ATGCAT	3 cut(s)	1506, 1533, 1981
NspI	RCATGY	5 cut(s)	297, 1091, 1250, 2092, 2503
PaeI	GCATGC	1 cut(s)	297
PagI	TCATGA	1 cut(s)	1929
PaqCI	CACCTGC	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	789
PciI	ACATGT	3 cut(s)	1246, 2088, 2499
PctI	GAATGC	3 cut(s)	352, 1195, 1506
PdmI	GAANNNNTTC	2 cut(s)	2295, 2469
PflMI	CCANNNNNTGG	1 cut(s)	2197
PfoI	TCCNGGA	1 cut(s)	2700
PleI	GAGTC	9 cut(s)	446, 762, 1044, 1812, 1817, 1953, 2597, 2629, 2675
PmaCI	CACGTG	1 cut(s)	2229
PmlI	CACGTG	1 cut(s)	2229
PpsI	GAGTC	9 cut(s)	446, 762, 1044, 1812, 1817, 1953, 2597, 2629, 2675
Ppu21I	YACGTR	5 cut(s)	1946, 2229, 2861, 2885, 3101
PscI	ACATGT	3 cut(s)	1246, 2088, 2499
Psp1406I	AACGTT	1 cut(s)	1227
Psp6I	CCWGG	4 cut(s)	1031, 1770, 2047, 2700
PspCI	CACGTG	1 cut(s)	2229
PspGI	CCWGG	4 cut(s)	1031, 1770, 2047, 2700
PspN4I	GGNNCC	2 cut(s)	469, 487
PspPI	GGNCC	3 cut(s)	325, 1256, 2337
PstNI	CAGNNNCTG	2 cut(s)	133, 2270
PsuI	RGATCY	5 cut(s)	109, 391, 864, 1765, 2151
PvuII	CAGCTG	2 cut(s)	133, 2270
RsaI	GTAC	7 cut(s)	1830, 2087, 2498, 2797, 2863, 3075, 3099
RsaNI	GTAC	7 cut(s)	1829, 2086, 2497, 2796, 2862, 3074, 3098
RseI	CAYNNNNRTG	3 cut(s)	1251, 2559, 2931
SaqAI	TTAA	9 cut(s)	723, 798, 1983, 2066, 2103, 2454, 2628, 2694, 3165
Sau96I	GGNCC	3 cut(s)	325, 1256, 2337
SchI	GAGTC	9 cut(s)	446, 763, 1045, 1813, 1817, 1953, 2598, 2629, 2676
ScrFI	CCNGG	5 cut(s)	1033, 1772, 2049, 2702, 3053
SduI	GDGCHC	3 cut(s)	1389, 3127, 3157
SexAI	ACCWGGT	1 cut(s)	2047
SfaNI	GCATC	4 cut(s)	536, 805, 1018, 1966
SfcI	CTRYAG	3 cut(s)	276, 387, 2271
SmiMI	CAYNNNNRTG	3 cut(s)	1251, 2559, 2931
SmlI	CTYRAG	5 cut(s)	849, 1961, 2542, 2693, 2849
SmoI	CTYRAG	5 cut(s)	849, 1961, 2542, 2693, 2849
SnaBI	TACGTA	2 cut(s)	2861, 3101
SphI	GCATGC	1 cut(s)	297
SseBI	AGGCCT	1 cut(s)	789
SsiI	CCGC	9 cut(s)	107, 290, 575, 636, 1732, 1736, 2210, 2252, 2423
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	6 cut(s)	785, 1205, 1215, 2075, 2126, 2603
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	5 cut(s)	1031, 1770, 2047, 2700, 3051
StyI	CCWWGG	1 cut(s)	3093
TaqI	TCGA	6 cut(s)	1068, 1142, 2299, 2345, 2917, 3087
TaqII	GACCGA	1 cut(s)	1234
TatI	WGTACW	2 cut(s)	2085, 2496
TauI	GCSGC	4 cut(s)	293, 639, 1735, 1738
Tru1I	TTAA	9 cut(s)	723, 798, 1983, 2066, 2103, 2454, 2628, 2694, 3165
Tru9I	TTAA	9 cut(s)	723, 798, 1983, 2066, 2103, 2454, 2628, 2694, 3165
TseFI	GTSAC	2 cut(s)	137, 2590
Tsp45I	GTSAC	2 cut(s)	137, 2590
TspDTI	ATGAA	5 cut(s)	495, 528, 998, 1308, 2813
TspGWI	ACGGA	2 cut(s)	827, 2033
Van91I	CCANNNNNTGG	1 cut(s)	2197
Vha464I	CTTAAG	1 cut(s)	2693
XagI	CCTNNNNNAGG	1 cut(s)	974
XapI	RAATTY	6 cut(s)	316, 434, 1179, 1746, 1886, 2779
XceI	RCATGY	5 cut(s)	297, 1091, 1250, 2092, 2503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	3 cut(s)	707, 1821, 1942
XmnI	GAANNNNTTC	2 cut(s)	2295, 2469
XspI	CTAG	6 cut(s)	785, 1205, 1215, 2075, 2126, 2603
Zsp2I	ATGCAT	3 cut(s)	1506, 1533, 1981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.