Rh7BG054500

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000203
Physical Location & Seq
Reverse (-)
3655220 .. 3656342
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG054500.1

Sequence Viewer

Length: 1005 bp
ATGTGGCATAGCTTCGAGGATTGGGTAGTTGAGAAACTAGCCTCGATCGAAACAACCAATTGGATCTCTCAATTGGAGGCTGAGGAGAGAGTTGATGAATCCGAAGAAGTGGACTATCGGGAAACGCCACTGGACACATGGAAGAGATTCAACAGATTGGCGGTTGAGCAACCAGCAAACGTAGGAAACCAGTTTAGAAAAGAGGTTCAAGGTCTGGACAGAGCAAACGATGAGCACACAAGGTGGGCTAACTCCATGGACTGGAAAACTGGGATACTTGCAGAGTTACTTTCCTTGTCCCATTTGACTACTTTAGAAGTTGTTCTGCCACCAGTTAATAAGCTTCTAACCAGTAATCTATTTAAAAAGCTCGAAAGATTTAAGATCTTTATAGGATGGAAGCAGCATATACTTTGGGACTTGAAGCATGATGGCAACTACTTGAGAGTTCACGATCTTGACGGAAGCGCTGTTGTGGGTAGTGGAATCACTTCGTTGCTAAAGAAAACCAGCATTCTTGAGTTTAGAATGAAGAATTTAACAGAACCTCAAGCTCTGAATGTCTTAGATACGGTCTGTTTTACAAAGATTAAGTCTCTTACACTTGAGGAGTGTGATGCTGTGGAGTATCTAATTGACACGACCCTTGTGAAACCTACTACTCCACATCGCAGCAGCGGCATCTTTCCTGTTTTGAATTCACTGGAGATCAGTTATGCAAGTAGACTGAAAGAGATTTTTCATGGTGAGCTGCCAACGGGGTCTCTCAAGGAAATTCGAAGTTTGAAAATAGAATGCTGCTCCTCCTTGGAAGGGATTTTTGCCTTTGAAGATGATGAAAAGATGTTCAACTTCCAAAGTCTAACAGAATTGACTCTCTCAACACTACCAAGCTTCACTGGGATAAGCAAATATATCTCTAATGGGTCGGAACAGCTACTAGAAGACATAAGCCCAGAACAATCTGACATCATCATACAACCTCTGTTCGATACTAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

334

Amino Acids

38.16

Weight (kDa)

4.97

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 226 - 301 1.1e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AccI GTMKAC 1 cut(s) 724
AciI CCGC 2 cut(s) 161, 678
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 3 cut(s) 535, 697, 774
AdeI CACNNNGTG 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 261, 813
AgsI TTSAA 7 cut(s) 151, 209, 424, 697, 787, 830, 850
AluBI AGCT 7 cut(s) 12, 343, 370, 554, 751, 894, 937
AluI AGCT 7 cut(s) 12, 343, 370, 554, 751, 894, 937
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 600, 768
AlwI GGATC 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 469
ApeKI GCWGC 5 cut(s) 403, 672, 675, 751, 798
ApoI RAATTY 3 cut(s) 535, 697, 774
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
Asp700I GAANNNNTTC 3 cut(s) 146, 321, 490
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 758
AsuII TTCGAA 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 5 cut(s) 415, 684, 687, 738, 785
BccI CCATC 2 cut(s) 390, 425
BciVI GTATCC 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 600, 768
BfaI CTAG 2 cut(s) 38, 941
BfoI RGCGCY 1 cut(s) 471
BfuI GTATCC 1 cut(s) 267
BglII AGATCT 1 cut(s) 384
BisI GCNGC 6 cut(s) 404, 673, 676, 679, 752, 799
BlsI GCNGC 6 cut(s) 405, 674, 677, 680, 753, 800
BmrI ACTGGG 2 cut(s) 279, 909
BmsI GCATC 2 cut(s) 607, 690
BmuI ACTGGG 2 cut(s) 279, 909
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 778
BpuEI CTTGAG 5 cut(s) 463, 534, 539, 626, 752
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 255, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 813
Bse1I ACTGG 8 cut(s) 135, 190, 266, 274, 332, 351, 708, 904
BseDI CCNNGG 2 cut(s) 255, 807
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 261, 813
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 8 cut(s) 135, 190, 266, 274, 332, 351, 708, 904
BseRI GAGGAG 3 cut(s) 98, 623, 793
BseXI GCAGC 5 cut(s) 415, 684, 687, 738, 785
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 2 cut(s) 283, 431
BslI CCNNNNNNNGG 2 cut(s) 261, 813
BsmAI GTCTC 2 cut(s) 600, 768
BsmFI GGGAC 2 cut(s) 283, 431
BsmI GAATGC 2 cut(s) 513, 800
Bso31I GGTCTC 1 cut(s) 768
Bsp119I TTCGAA 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 5 cut(s) 45, 63, 384, 454, 708
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 161, 678
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 768
BsrI ACTGG 8 cut(s) 135, 190, 266, 274, 332, 351, 708, 904
BssECI CCNNGG 2 cut(s) 255, 807
BssMI GATC 5 cut(s) 45, 63, 384, 454, 708
BssT1I CCWWGG 2 cut(s) 255, 807
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 778
BstDEI CTNAG 3 cut(s) 81, 565, 996
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 5 cut(s) 48, 66, 387, 457, 711
BstMAI GTCTC 2 cut(s) 600, 768
BstMBI GATC 5 cut(s) 45, 63, 384, 454, 708
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 678
BstV1I GCAGC 5 cut(s) 415, 684, 687, 738, 785
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 2 cut(s) 63, 384
BstYI RGATCY 2 cut(s) 63, 384
BsuI GTATCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 3 cut(s) 128, 701, 897
CfoI GCGC 1 cut(s) 470
CviAII CATG 4 cut(s) 138, 256, 428, 743
DdeI CTNAG 3 cut(s) 81, 565, 996
DpnI GATC 5 cut(s) 47, 65, 386, 456, 710
DpnII GATC 5 cut(s) 45, 63, 384, 454, 708
DraI TTTAAA 1 cut(s) 364
DraIII CACNNNGTG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 255, 807
Eco31I GGTCTC 1 cut(s) 768
Eco47III AGCGCT 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 697
EcoT14I CCWWGG 2 cut(s) 255, 807
ErhI CCWWGG 2 cut(s) 255, 807
FaeI CATG 4 cut(s) 141, 259, 431, 746
FaqI GGGAC 2 cut(s) 283, 431
FatI CATG 4 cut(s) 137, 255, 427, 742
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 6 cut(s) 404, 673, 676, 679, 752, 799
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 6 cut(s) 404, 673, 676, 679, 752, 799
FspBI CTAG 2 cut(s) 38, 941
GlaI GCGC 1 cut(s) 469
GluI GCNGC 6 cut(s) 404, 673, 676, 679, 752, 799
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 471
HhaI GCGC 1 cut(s) 470
Hin1II CATG 4 cut(s) 141, 259, 431, 746
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 2 cut(s) 341, 892
HinfI GANTC 4 cut(s) 98, 147, 486, 874
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 3 cut(s) 112, 451, 725
Hpy188I TCNGA 4 cut(s) 103, 558, 931, 967
Hpy188III TCNNGA 5 cut(s) 119, 215, 452, 458, 518
Hpy8I GTNNAC 3 cut(s) 112, 451, 725
HpyAV CCTTC 1 cut(s) 806
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 281, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 678
HpyF3I CTNAG 3 cut(s) 81, 565, 996
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 4 cut(s) 141, 259, 431, 746
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 5 cut(s) 45, 63, 384, 454, 708
LmnI GCTCC 1 cut(s) 806
Lsp1109I GCAGC 5 cut(s) 415, 684, 687, 738, 785
LweI GCATC 2 cut(s) 607, 690
MaeI CTAG 2 cut(s) 38, 941
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 285
MalI GATC 5 cut(s) 47, 65, 386, 456, 710
MboI GATC 5 cut(s) 45, 63, 384, 454, 708
MboII GAAGA 5 cut(s) 116, 154, 544, 842, 956
MfeI CAATTG 2 cut(s) 58, 71
MflI RGATCY 2 cut(s) 63, 384
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 7 cut(s) 58, 71, 535, 633, 697, 774, 869
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 1 cut(s) 909
MnlI CCTC 9 cut(s) 10, 52, 70, 76, 196, 558, 601, 814, 993
MroXI GAANNNNTTC 3 cut(s) 146, 321, 490
MseI TTAA 5 cut(s) 336, 363, 381, 539, 591
MspA1I CMGCKG 1 cut(s) 678
MunI CAATTG 2 cut(s) 58, 71
Mva1269I GAATGC 2 cut(s) 513, 800
MwoI GCNNNNNNNGC 1 cut(s) 678
NcoI CCATGG 1 cut(s) 255
NdeII GATC 5 cut(s) 45, 63, 384, 454, 708
NlaIII CATG 4 cut(s) 141, 259, 431, 746
NspV TTCGAA 1 cut(s) 778
PctI GAATGC 2 cut(s) 513, 800
PdmI GAANNNNTTC 3 cut(s) 146, 321, 490
PfeI GAWTC 3 cut(s) 98, 147, 486
PflMI CCANNNNNTGG 1 cut(s) 261
PkrI GCNGC 6 cut(s) 405, 674, 677, 680, 753, 800
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
PsuI RGATCY 2 cut(s) 63, 384
PvuI CGATCG 1 cut(s) 48
SaqAI TTAA 5 cut(s) 336, 363, 381, 539, 591
SatI GCNGC 6 cut(s) 404, 673, 676, 679, 752, 799
Sau3AI GATC 5 cut(s) 45, 63, 384, 454, 708
SchI GAGTC 1 cut(s) 868
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 607, 690
SfuI TTCGAA 1 cut(s) 778
SmlI CTYRAG 5 cut(s) 442, 518, 549, 605, 767
SmoI CTYRAG 5 cut(s) 442, 518, 549, 605, 767
Sse9I AATT 7 cut(s) 58, 71, 535, 633, 697, 774, 869
SsiI CCGC 2 cut(s) 161, 678
SspMI CTAG 2 cut(s) 38, 941
StyI CCWWGG 2 cut(s) 255, 807
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 1 cut(s) 183
TaqI TCGA 6 cut(s) 15, 44, 48, 372, 778, 990
TasI AATT 7 cut(s) 58, 71, 535, 633, 697, 774, 869
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 3 cut(s) 98, 147, 486
Tru1I TTAA 5 cut(s) 336, 363, 381, 539, 591
Tru9I TTAA 5 cut(s) 336, 363, 381, 539, 591
TscAI CASTG 3 cut(s) 135, 708, 904
TseI GCWGC 5 cut(s) 403, 672, 675, 751, 798
TspDTI ATGAA 4 cut(s) 111, 545, 731, 852
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 135, 708, 904
Van91I CCANNNNNTGG 1 cut(s) 261
XapI RAATTY 3 cut(s) 535, 697, 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 724
XmnI GAANNNNTTC 3 cut(s) 146, 321, 490
XspI CTAG 2 cut(s) 38, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.