Rmu_sc0012869.1_g000004

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012869.1
OG0000203
Physical Location & Seq
Forward (+)
25045 .. 25470
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012869.1_g000004.1.cds

Sequence Viewer

Length: 426 bp
atggatttcaaaatctttcagcatctaacaaatatatccgtctatagatgtgaaagcttgagaaaagtgtgctcgtcttccattgcaagaagtcttgtgaacctcgaaaaactagaaatcagtgagtgcaacaggttggaagaaatagtagcagcagaagagggtgaagaagcagaggataacaacatgttccctcatctcagacttttgactcttcaatgtctaccaaatctcgtaagtttttccagagaaaaatgtgctttagattggccatccatggaagacataactataaaggactgccccgaaatgaagaaattctgttcaggatcgcttaccacagcaatgaaaatgaaaataaaaataagtggtgaagttgatgagaatactcacagggagcttgacatgagtaagaggaaagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

141

Amino Acids

16.19

Weight (kDa)

5.47

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 10, 218
AluBI AGCT 2 cut(s) 57, 400
AluI AGCT 2 cut(s) 57, 400
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 1 cut(s) 337
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 176, 383
BalI TGGCCA 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 69, 288
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 280
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 69, 288
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 81, 351
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 272
BseMI GCAATG 2 cut(s) 81, 351
BseMII CTCAG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 74
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 276
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 213
BspPI GGATC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 81, 351
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 276
Bst6I CTCTTC 2 cut(s) 153, 219
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 69, 288
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 127
CviAII CATG 3 cut(s) 187, 277, 406
CviJI RGCY 4 cut(s) 57, 271, 400, 422
CviKI_1 RGCY 4 cut(s) 57, 271, 400, 422
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 153, 219
EarI CTCTTC 2 cut(s) 153, 219
Eco130I CCWWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 190, 280, 409
FaiI YATR 7 cut(s) 35, 45, 188, 278, 287, 293, 407
FatI CATG 3 cut(s) 186, 276, 405
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 3 cut(s) 190, 280, 409
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 1 cut(s) 211
HphI GGTGA 2 cut(s) 176, 383
Hpy166II GTNNAC 2 cut(s) 100, 224
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 2 cut(s) 246, 327
Hpy8I GTNNAC 2 cut(s) 100, 224
HpyCH4V TGCA 2 cut(s) 86, 129
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 3 cut(s) 190, 280, 409
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 4 cut(s) 118, 259, 312, 379
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 113
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 7 cut(s) 69, 152, 170, 179, 206, 293, 325
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 271
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 113, 154, 169, 204, 408
Mox20I TGGCCA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 317
MscI TGGCCA 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 271
NcoI CCATGG 1 cut(s) 276
NdeII GATC 1 cut(s) 329
NlaIII CATG 3 cut(s) 190, 280, 409
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PscI ACATGT 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 344
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 329
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 74
SetI ASST 4 cut(s) 59, 105, 137, 402
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 317
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 317
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 326, 362, 368
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.