Rroxscaffold_3G00270850

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000203
Physical Location & Seq
Forward (+)
63327846 .. 63329088
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270850.1

Sequence Viewer

Length: 945 bp
ATGAAACCTGCGAGAGAAGCTTCACAGATTATTGGTCCCGGAGTTGATCGCTGGCTCGGTGATGTAGAAAAGATCATAGTAGAACGTACAGGAGAAGAGTTTCAGAAAGCTAAGAAGATGACTAATGAGGTGGATAAACTCCTTGCTAATGAACCCAGGACTATAGCGCATCCTGCTCTTCATCCAGAGGTGGAATTCCAACCCACTGAGGACTTATTGCATGAAGGTGGCAGCTCCTCAGATACATCAAACCAAGAACAGGCACCTGCATATGAAGGAAAAAATATTAATTTTGATTCAAGAAGATCAACCATTAGAGATGTGATGGAAGCTCTCAAGGGGAATCAATTCAATCCGAATATCATATGCGGCATTGGGAAGACAACATTGATGGGGCCAATTTTTGAGAAAGCGCGCGAAGGAAGAGGACCTTTTGTGGCAAATAGGGATTCCCCTAGTTGTAAACTTCTGGTCACATCAAGACAACAAGATCTATTCAAGGACATAGACAGAAGAAAGAACTTCTCAATTGATGGTTTGCCAGATAGAGATGCCTGGAGTCTATTTAAGAAGACAGCAGGAAGTTCCATCGAATCTGATCTCGAGTTGCATGTTGTAGCAGAAAAGGTTCTGGAGGAATGTGCTGGGTTGCCAATCGCAATTTCAACTATTGGAACGGCACTAAAAGGTGAAAGCATTGCAATTTGGAATAATGCACTAAAGGAACTAGAAAAGGCTAGCCCAGAAAACGTTCCGGGAGTGATAGAACATGTGTATGGTAAAATAAAGTTCAGCTATGAATGTTTACGAAACGAGGAAGCCAAATCATGTTTTCTGCTGTGTTGCATATTTGAAGAAAGCGCTGATATACCAATCGAAGATTTGGTTAGATACGGGCTTGGCATGGGCTTGAGCTCTTTAAAGGCATTGATTCAATGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

314

Amino Acids

34.84

Weight (kDa)

5.22

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 274
Acc36I ACCTGC 2 cut(s) 16, 274
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 2 cut(s) 415, 417
AciI CCGC 1 cut(s) 369
AclI AACGTT 1 cut(s) 750
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 88
AfeI AGCGCT 1 cut(s) 862
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 6 cut(s) 300, 352, 499, 666, 854, 935
AjnI CCWGG 2 cut(s) 155, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 646, 678
AluBI AGCT 6 cut(s) 20, 110, 234, 332, 795, 915
AluI AGCT 6 cut(s) 20, 110, 234, 332, 795, 915
Alw21I GWGCWC 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 862
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 194
AseI ATTAAT 1 cut(s) 288
Asp700I GAANNNNTTC 4 cut(s) 99, 347, 627, 750
AspLEI GCGC 4 cut(s) 169, 415, 417, 863
AspS9I GGNCC 3 cut(s) 35, 395, 428
AsuC2I CCSGG 2 cut(s) 39, 756
AsuHPI GGTGA 2 cut(s) 71, 701
AsuNHI GCTAGC 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 2 cut(s) 35, 428
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 917
BbsI GAAGAC 2 cut(s) 386, 578
Bbv12I GWGCWC 1 cut(s) 917
BbvI GCAGC 1 cut(s) 243
BccI CCATC 4 cut(s) 319, 385, 527, 596
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 2 cut(s) 157, 556
BcnI CCSGG 2 cut(s) 39, 756
BfaI CTAG 3 cut(s) 456, 728, 738
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 864
BfuAI ACCTGC 2 cut(s) 16, 274
BglII AGATCT 1 cut(s) 490
BisI GCNGC 2 cut(s) 232, 370
BlsI GCNGC 2 cut(s) 233, 371
Bme1390I CCNGG 4 cut(s) 39, 157, 556, 756
Bme18I GGWCC 2 cut(s) 35, 428
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 3 cut(s) 35, 395, 428
BmiI GGNNCC 3 cut(s) 37, 264, 396
BmrFI CCNGG 4 cut(s) 39, 157, 556, 756
BmsI GCATC 2 cut(s) 178, 541
BmtI GCTAGC 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 386, 578
BpmI CTGGAG 2 cut(s) 577, 653
BpuEI CTTGAG 2 cut(s) 320, 931
BpuMI CCSGG 2 cut(s) 39, 756
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 157, 556
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 169, 181
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 198, 252
BsePI GCGCGC 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 644
Bsh1236I CGCG 2 cut(s) 415, 417
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 917
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 39, 755
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 917
Bsp143I GATC 5 cut(s) 46, 72, 305, 490, 598
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 2 cut(s) 199, 251
BspFNI CGCG 2 cut(s) 415, 417
BspLI GGNNCC 3 cut(s) 37, 264, 396
BspMI ACCTGC 2 cut(s) 16, 274
BspOI GCTAGC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 155
BssHII GCGCGC 1 cut(s) 413
BssMI GATC 5 cut(s) 46, 72, 305, 490, 598
Bst2UI CCWGG 2 cut(s) 157, 556
Bst6I CTCTTC 3 cut(s) 90, 183, 418
BstC8I GCNNGC 3 cut(s) 53, 415, 739
BstDEI CTNAG 3 cut(s) 111, 207, 238
BstF5I GGATG 2 cut(s) 169, 181
BstFNI CGCG 2 cut(s) 415, 417
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 4 cut(s) 169, 415, 417, 863
BstKTI GATC 5 cut(s) 49, 75, 308, 493, 601
BstMBI GATC 5 cut(s) 46, 72, 305, 490, 598
BstMWI GCNNNNNNNGC 2 cut(s) 17, 173
BstNI CCWGG 2 cut(s) 157, 556
BstNSI RCATGY 2 cut(s) 614, 773
BstSCI CCNGG 4 cut(s) 37, 155, 554, 754
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 2 cut(s) 415, 417
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 2 cut(s) 386, 578
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 169, 181
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 2 cut(s) 16, 274
Cac8I GCNNGC 3 cut(s) 53, 415, 739
CfoI GCGC 4 cut(s) 169, 415, 417, 863
Cfr13I GGNCC 3 cut(s) 35, 395, 428
Csp6I GTAC 1 cut(s) 87
CviAII CATG 5 cut(s) 221, 611, 770, 828, 904
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 3 cut(s) 111, 207, 238
DpnI GATC 5 cut(s) 48, 74, 307, 492, 600
DpnII GATC 5 cut(s) 46, 72, 305, 490, 598
DraI TTTAAA 1 cut(s) 921
Eam1104I CTCTTC 3 cut(s) 90, 183, 418
EarI CTCTTC 3 cut(s) 90, 183, 418
Ecl136II GAGCTC 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 917
Eco47I GGWCC 2 cut(s) 35, 428
Eco47III AGCGCT 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 915
Eco88I CYCGRG 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 915
EcoO109I RGGNCCY 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 155, 554
EcoT38I GRGCYC 1 cut(s) 917
FaeI CATG 5 cut(s) 224, 614, 773, 831, 907
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 1 cut(s) 21
FatI CATG 5 cut(s) 220, 610, 769, 827, 903
FauNDI CATATG 2 cut(s) 271, 365
Fnu4HI GCNGC 2 cut(s) 232, 370
FokI GGATG 2 cut(s) 156, 168
FriOI GRGCYC 1 cut(s) 917
Fsp4HI GCNGC 2 cut(s) 232, 370
FspBI CTAG 3 cut(s) 456, 728, 738
GlaI GCGC 4 cut(s) 168, 414, 416, 862
GluI GCNGC 2 cut(s) 232, 370
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 2 cut(s) 577, 653
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 1 cut(s) 397
HapII CCGG 2 cut(s) 39, 755
HhaI GCGC 4 cut(s) 169, 415, 417, 863
Hin1II CATG 5 cut(s) 224, 614, 773, 831, 907
Hin6I GCGC 4 cut(s) 167, 413, 415, 861
HinP1I GCGC 4 cut(s) 167, 413, 415, 861
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 6 cut(s) 296, 343, 449, 559, 593, 931
HpaII CCGG 2 cut(s) 39, 755
HphI GGTGA 2 cut(s) 71, 701
Hpy166II GTNNAC 2 cut(s) 464, 806
Hpy188I TCNGA 4 cut(s) 105, 241, 357, 598
Hpy188III TCNNGA 5 cut(s) 185, 300, 480, 602, 632
Hpy8I GTNNAC 2 cut(s) 464, 806
HpyAV CCTTC 3 cut(s) 218, 269, 413
HpyCH4IV ACGT 2 cut(s) 85, 750
HpyCH4V TGCA 6 cut(s) 220, 269, 610, 701, 716, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 173
HpyF3I CTNAG 3 cut(s) 111, 207, 238
HpySE526I ACGT 2 cut(s) 85, 750
Hsp92II CATG 5 cut(s) 224, 614, 773, 831, 907
HspAI GCGC 4 cut(s) 167, 413, 415, 861
Kzo9I GATC 5 cut(s) 46, 72, 305, 490, 598
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 178, 541
MaeI CTAG 3 cut(s) 456, 728, 738
MaeII ACGT 2 cut(s) 85, 750
MaeIII GTNAC 1 cut(s) 472
MalI GATC 5 cut(s) 48, 74, 307, 492, 600
MboI GATC 5 cut(s) 46, 72, 305, 490, 598
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 917
MluCI AATT 7 cut(s) 194, 289, 347, 399, 528, 660, 702
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 7 cut(s) 121, 181, 202, 247, 419, 628, 808
MroXI GAANNNNTTC 4 cut(s) 99, 347, 627, 750
MseI TTAA 3 cut(s) 288, 567, 920
MslI CAYNNNNRTG 2 cut(s) 225, 774
MspI CCGG 2 cut(s) 39, 755
MspR9I CCNGG 4 cut(s) 39, 157, 556, 756
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 2 cut(s) 157, 556
MvnI CGCG 2 cut(s) 415, 417
MwoI GCNNNNNNNGC 2 cut(s) 17, 173
NciI CCSGG 2 cut(s) 39, 756
NdeI CATATG 2 cut(s) 271, 365
NdeII GATC 5 cut(s) 46, 72, 305, 490, 598
NheI GCTAGC 1 cut(s) 737
NlaIII CATG 5 cut(s) 224, 614, 773, 831, 907
NlaIV GGNNCC 3 cut(s) 37, 264, 396
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 2 cut(s) 614, 773
PaeR7I CTCGAG 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 274
PauI GCGCGC 1 cut(s) 413
PciI ACATGT 1 cut(s) 769
PciSI GCTCTTC 1 cut(s) 183
PdmI GAANNNNTTC 4 cut(s) 99, 347, 627, 750
PfeI GAWTC 5 cut(s) 296, 343, 449, 593, 931
PfoI TCCNGGA 2 cut(s) 37, 754
PkrI GCNGC 2 cut(s) 233, 371
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 769
PshBI ATTAAT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 917
Psp1406I AACGTT 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 155, 554
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 2 cut(s) 155, 554
PspN4I GGNNCC 3 cut(s) 37, 264, 396
PspPI GGNCC 3 cut(s) 35, 395, 428
PspPPI RGGWCCY 1 cut(s) 428
PsuI RGATCY 1 cut(s) 490
PteI GCGCGC 1 cut(s) 413
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 2 cut(s) 225, 774
SacI GAGCTC 1 cut(s) 917
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 288, 567, 920
SatI GCNGC 2 cut(s) 232, 370
Sau3AI GATC 5 cut(s) 46, 72, 305, 490, 598
Sau96I GGNCC 3 cut(s) 35, 395, 428
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 4 cut(s) 39, 157, 556, 756
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 2 cut(s) 178, 541
SfcI CTRYAG 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 2 cut(s) 35, 428
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 225, 774
SmlI CTYRAG 3 cut(s) 335, 602, 910
SmoI CTYRAG 3 cut(s) 335, 602, 910
Sse9I AATT 7 cut(s) 194, 289, 347, 399, 528, 660, 702
SsiI CCGC 1 cut(s) 369
SspI AATATT 1 cut(s) 286
SspMI CTAG 3 cut(s) 456, 728, 738
SstI GAGCTC 1 cut(s) 917
StyD4I CCNGG 4 cut(s) 37, 155, 554, 754
TaiI ACGT 2 cut(s) 88, 753
TaqI TCGA 3 cut(s) 591, 603, 876
TasI AATT 7 cut(s) 194, 289, 347, 399, 528, 660, 702
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 5 cut(s) 296, 343, 449, 593, 931
Tru1I TTAA 3 cut(s) 288, 567, 920
Tru9I TTAA 3 cut(s) 288, 567, 920
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 6 cut(s) 17, 165, 170, 237, 288, 813
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 35, 428
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 614, 773
XhoI CTCGAG 1 cut(s) 602
XmnI GAANNNNTTC 4 cut(s) 99, 347, 627, 750
XspI CTAG 3 cut(s) 456, 728, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.