Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000203

Physical Location & Seq

Genomic Coordinates Forward (+)

34546833 .. 34549597

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTAGGATGATATTGAATAATGCATTGAGAGCAATAGTGAATGCAGAGAAAAGGCAGAAAGCTACGGTGGAGTTGCAACCTATTTCCACAGTCATGTCATCTTTCCTGAAAATTATGAAAAATCGAGGATATATCAAGGATTTTGAAGTTTTTGAGCCGCATAGAGTGGGGAAAATTACAGTTCAACTACAAGGCAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCAACGCACCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCACGAAGAGGCTATTACTCGTAATGTGGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

129

Amino Acids

14.92

Weight (kDa)

9.71

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	6 - 127	5.2e-22	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000203)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica	Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis	pycom05g14750
rosa_chinensis	RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata	RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora	Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii	Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa	Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha	Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana	Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	19, 149, 188, 257
AluBI	AGCT	3 cut(s)	65, 218, 277
AluI	AGCT	3 cut(s)	65, 218, 277
Alw21I	GWGCWC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	70, 94, 184
Bst6I	CTCTTC	2 cut(s)	252, 333
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 283
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	273
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	65, 160, 218, 277, 344, 378
CviKI_1	RGCY	6 cut(s)	65, 160, 218, 277, 344, 378
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	252, 333
EarI	CTCTTC	2 cut(s)	252, 333
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	1 cut(s)	100
FaiI	YATR	6 cut(s)	98, 119, 135, 165, 264, 300
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	109, 317, 335
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	3 cut(s)	70, 94, 184
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	26, 47, 79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 283
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	122, 184, 214, 302, 330, 353
MaeII	ACGT	1 cut(s)	237
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	269, 350
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	114, 177
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	122, 334
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	32, 283
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	67, 85, 220, 240, 279, 325, 372
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	114, 177
SsiI	CCGC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	70, 94, 184
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	127, 214
TasI	AATT	2 cut(s)	114, 177
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	134, 374
TspRI	CASTG	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.