Rroxscaffold_7G00163330

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000203
Physical Location & Seq
Forward (+)
5623364 .. 5625597
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163330.1

Sequence Viewer

Length: 429 bp
ATGTACTTGCAGGTTCATTTTCCAGTCTTAAGAAGTCTAAAAGAGATGTCAATTTCGGGTTGTGATAGTTTGAGAACTCTGTTCTCCCCTTCAATCGCCAGAGGTCTTGTGAAGCTCCAAAGACTATATATCGAAAACTGCAAGAAGATTGAAGAGATAGTAGCAGCAGCAGAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTAACAGTTTTGTGGCTTGAAAATCTACCCAATCTCAGAAGCTTTTCGCAAGGCAAATATAATTTCAAATGGCCGCTAGTGGAATATATAACAATTGAAGGATGCTGGAATATGAAGAAGTTTTGTTTCGGATCCGTCAGCATACCAAGGGAAGTGGACTTGGACGTCAGGGATGTTGGTGAGAATGTTTTGCAGGAGCTGAATAATAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

142

Amino Acids

16.43

Weight (kDa)

4.96

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 7 - 111 2.2e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 1 cut(s) 381
AciI CCGC 1 cut(s) 287
AclWI GGATC 2 cut(s) 339, 352
AcoI YGGCCR 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 5 cut(s) 93, 152, 233, 280, 311
AluBI AGCT 4 cut(s) 115, 214, 255, 412
AluI AGCT 4 cut(s) 115, 214, 255, 412
AlwI GGATC 2 cut(s) 339, 352
AlwNI CAGNNNCTG 1 cut(s) 412
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 164, 167
Asp700I GAANNNNTTC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 188, 404
BamHI GGATCC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 176, 179
BfaI CTAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 28
BisI GCNGC 3 cut(s) 165, 168, 287
BlsI GCNGC 3 cut(s) 166, 169, 288
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 3 cut(s) 199, 320, 391
BseMII CTCAG 2 cut(s) 224, 262
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 176, 179
BshFI GGCC 1 cut(s) 286
BsnI GGCC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 223, 261
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 2 cut(s) 339, 352
BspTI CTTAAG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 220, 426
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 210, 248
BstF5I GGATG 3 cut(s) 199, 320, 391
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 176, 179
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 3 cut(s) 199, 320, 391
CaiI CAGNNNCTG 1 cut(s) 412
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviJI RGCY 6 cut(s) 115, 214, 229, 255, 286, 412
CviKI_1 RGCY 6 cut(s) 115, 214, 229, 255, 286, 412
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 210, 248
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaiI YATR 7 cut(s) 127, 129, 273, 300, 302, 326, 356
Fnu4HI GCNGC 3 cut(s) 165, 168, 287
FokI GGATG 3 cut(s) 206, 327, 398
Fsp4HI GCNGC 3 cut(s) 165, 168, 287
FspBI CTAG 1 cut(s) 290
GluI GCNGC 3 cut(s) 165, 168, 287
HaeIII GGCC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 253
HphI GGTGA 2 cut(s) 188, 404
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 251, 344
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 99, 305
HpyCH4III ACNGT 2 cut(s) 220, 426
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 3 cut(s) 10, 141, 406
HpyF3I CTNAG 2 cut(s) 210, 248
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 378
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 2 cut(s) 120, 409
LpnPI CCDG 5 cut(s) 36, 112, 304, 367, 392
Lsp1109I GCAGC 2 cut(s) 176, 179
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 378
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 5 cut(s) 157, 164, 194, 196, 340
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 344
MluCI AATT 3 cut(s) 51, 274, 306
MnlI CCTC 4 cut(s) 95, 166, 184, 219
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 28
MunI CAATTG 1 cut(s) 306
NdeII GATC 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 256
PkrI GCNGC 3 cut(s) 166, 169, 288
PspN4I GGNNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 3 cut(s) 165, 168, 287
Sau3AI GATC 1 cut(s) 344
SetI ASST 7 cut(s) 15, 106, 117, 216, 257, 381, 414
SfaNI GCATC 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 51, 274, 306
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 220, 426
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 51, 274, 306
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 2 cut(s) 164, 167
TspDTI ATGAA 3 cut(s) 5, 195, 341
TspGWI ACGGA 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.