Rmu_sc0000014.1_g000011

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000014.1
OG0000203
Physical Location & Seq
Forward (+)
53398 .. 53751
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000014.1_g000011.1.cds

Sequence Viewer

Length: 354 bp
atgagatttcttgatttgtccatatgtagtgagctagaaataatactaccaggtgttatatcaagtttatcccgactagaagaattatacatgtggcatagcttcaaggattgggtagttgagaaactagcctcgatcaaaacaaccaattggatctttcaattggaggctgaggagagagttgatgaattcgaagaagtggactatcgggaaaggttactggacacgtggaagagattcaacagattggcggttgagcaaccagcaaacataggaaaccagtttagaaaagaggttcaaggtctggacagagcaaacgatgagcacacaaggtgggctaactccatggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

117

Amino Acids

14.04

Weight (kDa)

4.81

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 188
AcvI CACGTG 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 333
AflIII ACRYGT 2 cut(s) 90, 225
AgsI TTSAA 4 cut(s) 106, 161, 241, 299
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 2 cut(s) 34, 102
AluI AGCT 2 cut(s) 34, 102
Alw21I GWGCWC 1 cut(s) 327
AlwI GGATC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 51
BfaI CTAG 3 cut(s) 35, 77, 128
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 345
Bse1I ACTGG 2 cut(s) 225, 280
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 225, 280
BseRI GAGGAG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 135, 153
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 192
BsrI ACTGG 2 cut(s) 225, 280
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 135, 153
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 345
BstKTI GATC 2 cut(s) 138, 156
BstMBI GATC 2 cut(s) 135, 153
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 345
CsiI ACCWGGT 1 cut(s) 49
CviAII CATG 2 cut(s) 91, 346
CviJI RGCY 5 cut(s) 34, 102, 131, 170, 338
CviKI_1 RGCY 5 cut(s) 34, 102, 131, 170, 338
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 137, 155
DpnII GATC 2 cut(s) 135, 153
DraIII CACNNNGTG 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 345
Eco72I CACGTG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 94, 349
FaiI YATR 8 cut(s) 23, 25, 59, 88, 92, 99, 272, 347
FatI CATG 2 cut(s) 90, 345
FauNDI CATATG 1 cut(s) 23
FspBI CTAG 3 cut(s) 35, 77, 128
Hin1II CATG 2 cut(s) 94, 349
HinfI GANTC 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 4 cut(s) 11, 72, 209, 305
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 94, 349
Kzo9I GATC 2 cut(s) 135, 153
LpnPI CCDG 6 cut(s) 36, 63, 206, 276, 290, 293
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 3 cut(s) 35, 77, 128
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 216
MalI GATC 2 cut(s) 137, 155
MboI GATC 2 cut(s) 135, 153
MboII GAAGA 3 cut(s) 92, 206, 244
MfeI CAATTG 2 cut(s) 148, 161
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 4 cut(s) 83, 148, 161, 188
MnlI CCTC 4 cut(s) 142, 160, 166, 286
MroXI GAANNNNTTC 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 2 cut(s) 148, 161
MvaI CCWGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 23
NdeII GATC 2 cut(s) 135, 153
NlaIII CATG 2 cut(s) 94, 349
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 192
PciI ACATGT 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 228
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 49
PspCI CACGTG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 153
Sau3AI GATC 2 cut(s) 135, 153
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 36, 55, 104, 218, 230, 297, 304, 335
SexAI ACCWGGT 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 192
Sse9I AATT 4 cut(s) 83, 148, 161, 188
SsiI CCGC 1 cut(s) 251
SspMI CTAG 3 cut(s) 35, 77, 128
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 345
TaiI ACGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 134, 192
TasI AATT 4 cut(s) 83, 148, 161, 188
TfiI GAWTC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 201
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 3 cut(s) 35, 77, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.