FvH4_2g36840

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000203
Physical Location & Seq
Forward (+)
26906670 .. 26908898
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36840.t1

Sequence Viewer

Length: 591 bp
ATGAATGTGGGTTACGCAATGAGCCTGAGGAGACAGTGTCCGAAGAATGTAGACCCGAGAACTGCGATTACTTTGGACCCAACAACGCCGCAGAGATTCGACAACATGACATTGCCCACCAGGTGTTCGATGAAATGCCGCTTAGACTTCAACTTCAACTCATGGGCCAAGGCCACCATGAGGACTGAAGTGCCAATTACCACAGAGGCCTCAAGTGCTTTCTCCAGCGACGCTGTTGGCAGGGGTCTCGTGAAGCTTCAAACACTAGAGATAGACAACTGCGAGAAGCTTGAAGAGATAATAGAAGCACCAGCAGAGGGTGAAGAAACAGAGGATGACAACATGTTCCCTCAGCTATGTACTTTGAAACTTACAGAACTACCAAATCTCGTAAGCTTTTCTCGAGGCAGATATAATTTCAAATGGCCACTAGTGGAAGACATACAAATTTTTGAGTGCCGCAATATGAACAAGTTTTGTTTAGGATTCCTCAGCACATCAAAGTATGTGGAAATAGAAGTTTACGGTGCTGGTGTGAGTGTTTTGGAGGATCTCAATAACTGTTTAACAGTAGACACAGAATCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

4.64

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 74 - 157 4.8e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 51, 573
AciI CCGC 3 cut(s) 89, 139, 460
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 180, 317
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 6 cut(s) 151, 157, 260, 293, 367, 421
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 4 cut(s) 256, 289, 355, 396
AluI AGCT 4 cut(s) 256, 289, 355, 396
Alw26I GTCTC 2 cut(s) 25, 251
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 2 cut(s) 55, 402
AoxI GGCC 4 cut(s) 165, 171, 207, 425
ApoI RAATTY 1 cut(s) 447
AspS9I GGNCC 2 cut(s) 76, 165
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 2 cut(s) 55, 402
AvaII GGWCC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 26
BalI TGGCCA 1 cut(s) 427
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 444
BbvCI CCTCAGC 2 cut(s) 351, 491
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 25, 251
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 2 cut(s) 266, 431
BisI GCNGC 3 cut(s) 89, 139, 460
BlsI GCNGC 3 cut(s) 90, 140, 461
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 2 cut(s) 55, 402
BmgT120I GGNCC 2 cut(s) 76, 165
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 208
Bpu10I CCTNAGC 2 cut(s) 351, 491
BpuEI CTTGAG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 317
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 24, 110
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 180, 317
BseMI GCAATG 2 cut(s) 24, 110
BseMII CTCAG 3 cut(s) 17, 365, 505
BseRI GAGGAG 1 cut(s) 43
BshFI GGCC 4 cut(s) 167, 173, 209, 427
BsiHKCI CYCGRG 2 cut(s) 55, 402
BslI CCNNNNNNNGG 2 cut(s) 180, 317
BsmAI GTCTC 2 cut(s) 25, 251
BsnI GGCC 4 cut(s) 167, 173, 209, 427
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 2 cut(s) 55, 402
Bsp143I GATC 1 cut(s) 550
BspACI CCGC 3 cut(s) 89, 139, 460
BspANI GGCC 4 cut(s) 167, 173, 209, 427
BspCNI CTCAG 3 cut(s) 18, 364, 504
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 24, 110
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 36, 527, 563, 571
Bst6I CTCTTC 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 26, 142, 351, 491
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 4 cut(s) 167, 173, 209, 427
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 41
CaiI CAGNNNCTG 1 cut(s) 584
Cfr13I GGNCC 2 cut(s) 76, 165
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 119
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 4 cut(s) 106, 162, 178, 343
CviJI RGCY 9 cut(s) 24, 167, 173, 209, 256, 289, 355, 396, 427
CviKI_1 RGCY 9 cut(s) 24, 167, 173, 209, 256, 289, 355, 396, 427
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 4 cut(s) 26, 142, 351, 491
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
DraIII CACNNNGTG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 55, 402
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 109, 165, 181, 346
FaiI YATR 9 cut(s) 107, 163, 179, 344, 358, 414, 443, 467, 507
FatI CATG 4 cut(s) 105, 161, 177, 342
FblI GTMKAC 2 cut(s) 51, 573
Fnu4HI GCNGC 3 cut(s) 89, 139, 460
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 3 cut(s) 89, 139, 460
FspBI CTAG 2 cut(s) 266, 431
GluI GCNGC 3 cut(s) 89, 139, 460
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 4 cut(s) 167, 173, 209, 427
HgaI GACGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 109, 165, 181, 346
HindIII AAGCTT 3 cut(s) 254, 287, 394
HinfI GANTC 3 cut(s) 96, 486, 581
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 52, 523, 574
Hpy188I TCNGA 2 cut(s) 42, 586
Hpy188III TCNNGA 2 cut(s) 250, 402
Hpy8I GTNNAC 3 cut(s) 52, 523, 574
Hpy99I CGWCG 1 cut(s) 233
HpyCH4III ACNGT 4 cut(s) 36, 527, 563, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 4 cut(s) 26, 142, 351, 491
Hsp92II CATG 4 cut(s) 109, 165, 181, 346
Kzo9I GATC 1 cut(s) 550
LpnPI CCDG 7 cut(s) 38, 106, 133, 226, 238, 324, 516
MabI ACCWGGT 1 cut(s) 119
MaeI CTAG 2 cut(s) 266, 431
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MboII GAAGA 4 cut(s) 55, 305, 335, 449
MflI RGATCY 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 3 cut(s) 195, 415, 447
MluNI TGGCCA 1 cut(s) 427
Mox20I TGGCCA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 427
MseI TTAA 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 550
NlaIII CATG 4 cut(s) 109, 165, 181, 346
NlaIV GGNNCC 1 cut(s) 78
NspI RCATGY 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 402
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 342
PfeI GAWTC 3 cut(s) 96, 486, 581
PflFI GACNNNGTC 1 cut(s) 36
PkrI GCNGC 3 cut(s) 90, 140, 461
PscI ACATGT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 76, 165
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 3 cut(s) 89, 139, 460
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 2 cut(s) 76, 165
ScrFI CCNGG 1 cut(s) 121
SetI ASST 5 cut(s) 125, 258, 291, 357, 398
SexAI ACCWGGT 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 211, 402
SmoI CTYRAG 2 cut(s) 211, 402
SpeI ACTAGT 1 cut(s) 430
Sse9I AATT 3 cut(s) 195, 415, 447
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 3 cut(s) 89, 139, 460
SspMI CTAG 2 cut(s) 266, 431
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 4 cut(s) 36, 527, 563, 571
TaqI TCGA 3 cut(s) 99, 128, 403
TasI AATT 3 cut(s) 195, 415, 447
TatI WGTACW 1 cut(s) 359
TauI GCSGC 3 cut(s) 91, 141, 462
TfiI GAWTC 3 cut(s) 96, 486, 581
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 17, 146, 482
TspRI CASTG 1 cut(s) 41
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 51, 573
XspI CTAG 2 cut(s) 266, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.